Wall clock time and date at job start Mon Mar 30 2020 07:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47122 * 2 1 4 4 C 1.52999 * 109.47122 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47455 * 185.59600 * 4 3 2 6 6 H 1.09004 * 109.46764 * 53.47534 * 5 4 3 7 7 C 1.50700 * 109.47610 * 173.47878 * 5 4 3 8 8 O 1.21285 * 119.99597 * 10.61338 * 7 5 4 9 9 N 1.34766 * 120.00184 * 190.61545 * 7 5 4 10 10 C 1.47578 * 134.49414 * 174.37161 * 9 7 5 11 11 C 1.53946 * 86.11853 * 155.36093 * 10 9 7 12 12 C 1.50697 * 113.74116 * 137.95457 * 11 10 9 13 13 H 1.07998 * 120.00266 * 0.02562 * 12 11 10 14 14 C 1.37881 * 120.00197 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99969 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00204 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.46937 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47304 * 120.00041 * 16 14 12 19 19 H 1.48503 * 109.47195 * 239.99964 * 16 14 12 20 20 C 1.47586 * 134.49396 * 354.37509 * 9 7 5 21 21 C 1.53008 * 109.46991 * 293.47929 * 5 4 3 22 22 C 1.52998 * 109.47131 * 327.51361 * 21 5 4 23 23 C 1.53004 * 109.46794 * 87.51320 * 21 5 4 24 24 H 1.09004 * 109.47127 * 299.99849 * 1 2 3 25 25 H 1.09000 * 109.47338 * 59.99782 * 1 2 3 26 26 H 1.08997 * 109.47529 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47127 * 240.00151 * 2 1 3 28 28 H 1.09000 * 109.47338 * 120.00218 * 2 1 3 29 29 H 1.09004 * 109.46997 * 60.00071 * 3 2 1 30 30 H 1.08996 * 109.47444 * 299.99869 * 3 2 1 31 31 H 1.09006 * 109.47266 * 65.59856 * 4 3 2 32 32 H 1.09001 * 109.47268 * 305.59476 * 4 3 2 33 33 H 1.09008 * 113.76476 * 41.06442 * 10 9 7 34 34 H 1.08992 * 113.77872 * 269.66602 * 10 9 7 35 35 H 1.08995 * 113.74444 * 269.26695 * 11 10 9 36 36 H 0.96996 * 119.99990 * 180.02562 * 15 14 12 37 37 H 1.09000 * 113.76719 * 90.33956 * 20 9 7 38 38 H 1.08994 * 113.76642 * 318.94585 * 20 9 7 39 39 H 1.08993 * 109.46925 * 207.50993 * 21 5 4 40 40 H 1.09003 * 109.47204 * 66.60158 * 22 21 5 41 41 H 1.08996 * 109.47013 * 186.60235 * 22 21 5 42 42 H 1.09000 * 109.47064 * 306.59941 * 22 21 5 43 43 H 1.09001 * 109.47432 * 62.40719 * 23 21 5 44 44 H 1.09002 * 109.46659 * 182.40950 * 23 21 5 45 45 H 1.08996 * 109.47057 * 302.40127 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0801 2.8781 0.1400 6 1 3.6249 3.3412 1.0155 7 6 5.5785 2.8654 0.3003 8 8 6.1999 1.8412 0.1109 9 7 6.2279 3.9920 0.6540 10 6 7.6268 4.3158 0.9950 11 6 7.2927 5.7516 0.5514 12 6 7.8611 6.8140 1.4564 13 1 8.4421 6.5319 2.3220 14 6 7.6395 8.1464 1.1794 15 7 6.9316 8.4901 0.1257 16 14 8.3447 9.4634 2.3009 17 1 9.0960 8.8200 3.4085 18 1 9.2595 10.3375 1.5237 19 1 7.2385 10.2797 2.8625 20 6 5.8258 5.3976 0.8562 21 6 3.7077 3.6765 -1.1110 22 6 3.7185 2.7505 -2.3289 23 6 2.3101 4.2744 -0.9371 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.6767 1.9563 -0.8899 31 1 3.9330 1.0180 -0.9368 32 1 3.9337 0.8442 0.8348 33 1 8.3601 3.8191 0.3595 34 1 7.8524 4.2255 2.0575 35 1 7.4880 5.9415 -0.5040 36 1 6.7760 9.4274 -0.0694 37 1 5.5222 5.6250 1.8780 38 1 5.1211 5.7645 0.1101 39 1 4.4304 4.4790 -1.2582 40 1 2.9168 2.0179 -2.2354 41 1 3.5690 3.3391 -3.2341 42 1 4.6772 2.2350 -2.3849 43 1 2.3133 4.9668 -0.0953 44 1 2.0275 4.8073 -1.8449 45 1 1.5940 3.4749 -0.7473 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598767440.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:49:18 Heat of formation + Delta-G solvation = -35.013047 kcal Electronic energy + Delta-G solvation = -21339.029127 eV Core-core repulsion = 18356.640262 eV Total energy + Delta-G solvation = -2982.388865 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.90893 -37.90351 -36.43101 -34.41580 -32.65778 -30.42978 -29.39094 -27.23820 -27.10540 -25.09853 -24.90745 -22.73584 -20.97020 -20.62806 -19.32648 -17.88754 -16.86467 -16.26244 -16.07575 -15.40355 -14.81746 -14.56833 -14.20520 -13.95721 -13.71482 -13.32225 -12.92325 -12.64710 -12.50224 -12.33283 -12.16984 -12.04759 -11.60440 -11.55848 -11.27630 -11.20430 -11.14645 -11.03148 -10.92338 -10.75966 -10.74803 -10.64238 -10.40156 -10.34400 -9.83468 -9.50710 -9.25786 -8.82111 -8.57759 -7.78209 -6.18267 -4.23534 3.22124 3.25006 3.31335 3.34861 3.64498 4.33223 4.72709 4.82728 4.90490 5.01207 5.09902 5.11089 5.13227 5.33432 5.37250 5.48336 5.62164 5.71135 5.72477 5.79931 5.83341 5.85661 5.95312 6.00295 6.05127 6.09338 6.14366 6.17988 6.21377 6.23438 6.31375 6.34364 6.41684 6.42800 6.55608 6.59192 6.62685 6.74992 6.86526 7.56239 7.79590 8.17958 8.59097 8.80204 8.84741 9.43269 10.91337 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.029783 B = 0.004157 C = 0.003965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.922606 B = 6733.909650 C = 7060.284318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.129 4.129 4 C -0.101 4.101 5 C -0.097 4.097 6 H 0.088 0.912 7 C 0.529 3.471 8 O -0.568 6.568 9 N -0.640 5.640 10 C 0.101 3.899 11 C 0.034 3.966 12 C -0.518 4.518 13 H 0.063 0.937 14 C 0.068 3.932 15 N -0.886 5.886 16 Si 0.894 3.106 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.283 1.283 20 C 0.103 3.897 21 C -0.088 4.088 22 C -0.150 4.150 23 C -0.158 4.158 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.050 0.950 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.263 0.737 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.079 0.921 40 H 0.061 0.939 41 H 0.051 0.949 42 H 0.057 0.943 43 H 0.056 0.944 44 H 0.054 0.946 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.634 -9.839 -1.486 15.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.166 4.166 4 C -0.139 4.139 5 C -0.118 4.118 6 H 0.106 0.894 7 C 0.318 3.682 8 O -0.448 6.448 9 N -0.373 5.373 10 C -0.021 4.021 11 C 0.015 3.985 12 C -0.556 4.556 13 H 0.081 0.919 14 C -0.136 4.136 15 N -0.523 5.523 16 Si 0.722 3.278 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.209 1.209 20 C -0.019 4.019 21 C -0.107 4.107 22 C -0.207 4.207 23 C -0.215 4.215 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.098 0.902 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.073 0.927 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.481 -10.384 -1.737 15.577 hybrid contribution 0.288 0.920 0.691 1.186 sum -11.193 -9.464 -1.046 14.695 Atomic orbital electron populations 1.21778 0.96163 1.01292 1.01707 1.21547 0.95468 0.97310 1.02002 1.22003 0.95683 0.96450 1.02439 1.21503 0.94329 0.94680 1.03399 1.21368 0.92562 0.98036 0.99823 0.89358 1.20308 0.89259 0.81867 0.76746 1.90607 1.69232 1.31867 1.53131 1.50432 1.12438 1.08745 1.65693 1.23470 0.82255 0.96964 0.99430 1.20493 0.90097 0.89493 0.98451 1.21022 1.33875 0.90308 1.10444 0.91891 1.25022 0.94697 0.98760 0.95088 1.69958 1.38700 1.17447 1.26198 0.86503 0.78952 0.81608 0.80773 1.19600 1.20895 1.20919 1.23724 1.02282 0.75883 0.99987 1.21069 0.98175 0.97854 0.93569 1.22012 1.02215 0.99465 0.97011 1.22185 0.96404 1.01026 1.01871 0.92842 0.92840 0.93059 0.92109 0.92181 0.92086 0.90535 0.90569 0.91912 0.92227 0.90963 0.91821 0.92735 0.90961 0.91694 0.90237 0.91975 0.93014 0.92393 0.92501 0.92691 0.91394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.91 37.16 0.37 -0.87 16 2 C -0.13 -1.19 5.93 -26.73 -0.16 -1.35 16 3 C -0.13 -1.36 3.57 -26.73 -0.10 -1.45 16 4 C -0.10 -1.37 3.47 -26.73 -0.09 -1.46 16 5 C -0.10 -1.48 1.92 -91.77 -0.18 -1.65 16 6 H 0.09 1.30 7.87 -51.93 -0.41 0.89 16 7 C 0.53 10.43 7.14 -10.99 -0.08 10.35 16 8 O -0.57 -12.81 16.77 5.55 0.09 -12.71 16 9 N -0.64 -13.14 3.53 -178.42 -0.63 -13.77 16 10 C 0.10 2.14 8.39 -2.98 -0.02 2.11 16 11 C 0.03 0.79 3.62 -90.85 -0.33 0.46 16 12 C -0.52 -13.20 8.77 -34.44 -0.30 -13.50 16 13 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 14 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 15 N -0.89 -23.92 13.28 55.43 0.74 -23.19 16 16 Si 0.89 20.03 29.54 -169.99 -5.02 15.01 16 17 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 18 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 20 C 0.10 2.17 7.79 -2.97 -0.02 2.15 16 21 C -0.09 -1.25 2.57 -90.61 -0.23 -1.48 16 22 C -0.15 -1.95 7.75 37.16 0.29 -1.67 16 23 C -0.16 -1.87 8.80 37.16 0.33 -1.54 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 0.77 4.07 -51.93 -0.21 0.56 16 31 H 0.08 1.08 5.93 -51.93 -0.31 0.77 16 32 H 0.06 0.92 8.07 -51.93 -0.42 0.50 16 33 H 0.06 1.25 8.14 -51.92 -0.42 0.82 16 34 H 0.07 1.48 8.09 -51.93 -0.42 1.06 16 35 H 0.06 1.63 8.13 -51.93 -0.42 1.21 16 36 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 37 H 0.07 1.50 8.09 -51.93 -0.42 1.08 16 38 H 0.06 1.34 6.79 -51.93 -0.35 0.99 16 39 H 0.08 1.33 6.11 -51.93 -0.32 1.01 16 40 H 0.06 0.70 5.19 -51.93 -0.27 0.43 16 41 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.86 7.72 -51.93 -0.40 0.46 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.07 0.70 4.51 -51.93 -0.23 0.46 16 LS Contribution 347.62 15.07 5.24 5.24 Total: -1.00 -28.00 347.62 -8.17 -36.17 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -7.96 Total: 1.49 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: -0.63 Total: -8.24 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: 0.11 Total: -36.96 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.09 Total: -12.71 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -28.00 -8.17 -36.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598767440.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.155 kcal (2) G-P(sol) polarization free energy of solvation -28.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds