Wall clock time and date at job start Mon Mar 30 2020 07:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47122 * 2 1 4 4 C 1.52999 * 109.47122 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47455 * 185.59600 * 4 3 2 6 6 H 1.09004 * 109.46764 * 53.47534 * 5 4 3 7 7 C 1.50700 * 109.47610 * 173.47878 * 5 4 3 8 8 O 1.21285 * 119.99597 * 10.61338 * 7 5 4 9 9 N 1.34766 * 120.00184 * 190.61545 * 7 5 4 10 10 C 1.47578 * 134.49414 * 174.37161 * 9 7 5 11 11 C 1.53946 * 86.11853 * 155.36093 * 10 9 7 12 12 C 1.50697 * 113.74116 * 137.95457 * 11 10 9 13 13 H 1.07998 * 120.00266 * 0.02562 * 12 11 10 14 14 C 1.37881 * 120.00197 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99969 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00204 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.46937 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47304 * 120.00041 * 16 14 12 19 19 H 1.48503 * 109.47195 * 239.99964 * 16 14 12 20 20 C 1.47586 * 134.49396 * 354.37509 * 9 7 5 21 21 C 1.53008 * 109.46991 * 293.47929 * 5 4 3 22 22 C 1.52998 * 109.47131 * 327.51361 * 21 5 4 23 23 C 1.53004 * 109.46794 * 87.51320 * 21 5 4 24 24 H 1.09004 * 109.47127 * 299.99849 * 1 2 3 25 25 H 1.09000 * 109.47338 * 59.99782 * 1 2 3 26 26 H 1.08997 * 109.47529 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47127 * 240.00151 * 2 1 3 28 28 H 1.09000 * 109.47338 * 120.00218 * 2 1 3 29 29 H 1.09004 * 109.46997 * 60.00071 * 3 2 1 30 30 H 1.08996 * 109.47444 * 299.99869 * 3 2 1 31 31 H 1.09006 * 109.47266 * 65.59856 * 4 3 2 32 32 H 1.09001 * 109.47268 * 305.59476 * 4 3 2 33 33 H 1.09008 * 113.76476 * 41.06442 * 10 9 7 34 34 H 1.08992 * 113.77872 * 269.66602 * 10 9 7 35 35 H 1.08995 * 113.74444 * 269.26695 * 11 10 9 36 36 H 0.96996 * 119.99990 * 180.02562 * 15 14 12 37 37 H 1.09000 * 113.76719 * 90.33956 * 20 9 7 38 38 H 1.08994 * 113.76642 * 318.94585 * 20 9 7 39 39 H 1.08993 * 109.46925 * 207.50993 * 21 5 4 40 40 H 1.09003 * 109.47204 * 66.60158 * 22 21 5 41 41 H 1.08996 * 109.47013 * 186.60235 * 22 21 5 42 42 H 1.09000 * 109.47064 * 306.59941 * 22 21 5 43 43 H 1.09001 * 109.47432 * 62.40719 * 23 21 5 44 44 H 1.09002 * 109.46659 * 182.40950 * 23 21 5 45 45 H 1.08996 * 109.47057 * 302.40127 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0801 2.8781 0.1400 6 1 3.6249 3.3412 1.0155 7 6 5.5785 2.8654 0.3003 8 8 6.1999 1.8412 0.1109 9 7 6.2279 3.9920 0.6540 10 6 7.6268 4.3158 0.9950 11 6 7.2927 5.7516 0.5514 12 6 7.8611 6.8140 1.4564 13 1 8.4421 6.5319 2.3220 14 6 7.6395 8.1464 1.1794 15 7 6.9316 8.4901 0.1257 16 14 8.3447 9.4634 2.3009 17 1 9.0960 8.8200 3.4085 18 1 9.2595 10.3375 1.5237 19 1 7.2385 10.2797 2.8625 20 6 5.8258 5.3976 0.8562 21 6 3.7077 3.6765 -1.1110 22 6 3.7185 2.7505 -2.3289 23 6 2.3101 4.2744 -0.9371 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.6767 1.9563 -0.8899 31 1 3.9330 1.0180 -0.9368 32 1 3.9337 0.8442 0.8348 33 1 8.3601 3.8191 0.3595 34 1 7.8524 4.2255 2.0575 35 1 7.4880 5.9415 -0.5040 36 1 6.7760 9.4274 -0.0694 37 1 5.5222 5.6250 1.8780 38 1 5.1211 5.7645 0.1101 39 1 4.4304 4.4790 -1.2582 40 1 2.9168 2.0179 -2.2354 41 1 3.5690 3.3391 -3.2341 42 1 4.6772 2.2350 -2.3849 43 1 2.3133 4.9668 -0.0953 44 1 2.0275 4.8073 -1.8449 45 1 1.5940 3.4749 -0.7473 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598767440.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:49:17 Heat of formation + Delta-G solvation = -48.723851 kcal Electronic energy + Delta-G solvation = -21339.623672 eV Core-core repulsion = 18356.640262 eV Total energy + Delta-G solvation = -2982.983410 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.43392 -39.37270 -37.94565 -35.29687 -34.61216 -31.54477 -30.97185 -28.46294 -28.19140 -26.86344 -26.59590 -23.71762 -22.25587 -21.83301 -20.74734 -19.43086 -18.75056 -17.71183 -17.31556 -16.93786 -16.47726 -16.10173 -15.45395 -15.22249 -14.70531 -14.50578 -14.24669 -14.03848 -13.87300 -13.48716 -13.42476 -13.29481 -13.13708 -12.94610 -12.80732 -12.65343 -12.51155 -12.23258 -12.09870 -12.06086 -12.03343 -11.76528 -11.61390 -11.36312 -11.28849 -11.14717 -10.84625 -10.63350 -10.41160 -9.51014 -8.16316 -6.27502 1.45395 1.49070 1.59368 1.66045 2.03663 2.46062 3.14381 3.47619 3.70983 3.82270 4.07939 4.14114 4.20137 4.26774 4.33217 4.43732 4.48151 4.50784 4.56025 4.60109 4.65341 4.74318 4.79997 4.87322 4.88320 4.90577 4.97713 5.00062 5.01906 5.06191 5.12247 5.19017 5.19642 5.27258 5.35995 5.41469 5.46290 5.55145 5.59339 5.64157 5.81298 6.22735 6.80348 6.93259 7.20608 7.42498 8.93505 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.029783 B = 0.004157 C = 0.003965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.922606 B = 6733.909650 C = 7060.284318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C -0.121 4.121 4 C -0.095 4.095 5 C -0.090 4.090 6 H 0.099 0.901 7 C 0.522 3.478 8 O -0.599 6.599 9 N -0.642 5.642 10 C 0.104 3.896 11 C 0.024 3.976 12 C -0.531 4.531 13 H 0.064 0.936 14 C 0.022 3.978 15 N -0.916 5.916 16 Si 0.957 3.043 17 H -0.266 1.266 18 H -0.284 1.284 19 H -0.279 1.279 20 C 0.121 3.879 21 C -0.086 4.086 22 C -0.146 4.146 23 C -0.152 4.152 24 H 0.055 0.945 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.067 0.933 32 H 0.048 0.952 33 H 0.057 0.943 34 H 0.083 0.917 35 H 0.033 0.967 36 H 0.265 0.735 37 H 0.078 0.922 38 H 0.066 0.934 39 H 0.049 0.951 40 H 0.083 0.917 41 H 0.061 0.939 42 H 0.032 0.968 43 H 0.053 0.947 44 H 0.063 0.937 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.454 -9.905 -0.902 16.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.158 4.158 4 C -0.133 4.133 5 C -0.111 4.111 6 H 0.117 0.883 7 C 0.314 3.686 8 O -0.481 6.481 9 N -0.375 5.375 10 C -0.018 4.018 11 C 0.005 3.995 12 C -0.569 4.569 13 H 0.082 0.918 14 C -0.178 4.178 15 N -0.554 5.554 16 Si 0.783 3.217 17 H -0.190 1.190 18 H -0.210 1.210 19 H -0.204 1.204 20 C -0.001 4.001 21 C -0.105 4.105 22 C -0.203 4.203 23 C -0.209 4.209 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.105 0.895 31 H 0.086 0.914 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.101 0.899 35 H 0.051 0.949 36 H 0.074 0.926 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.067 0.933 40 H 0.102 0.898 41 H 0.080 0.920 42 H 0.051 0.949 43 H 0.072 0.928 44 H 0.082 0.918 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -13.307 -10.457 -1.147 16.963 hybrid contribution 0.920 0.891 0.473 1.366 sum -12.386 -9.566 -0.675 15.665 Atomic orbital electron populations 1.21759 0.94827 1.01959 1.02183 1.21539 0.96592 0.96386 1.01830 1.21951 0.93001 0.97548 1.03264 1.21470 0.96594 0.92913 1.02338 1.21438 0.88999 0.99730 1.00891 0.88296 1.21170 0.91123 0.80873 0.75446 1.90585 1.70399 1.32827 1.54306 1.50437 1.12068 1.09030 1.65937 1.23374 0.82986 0.95564 0.99910 1.20388 0.92161 0.90456 0.96508 1.21290 1.33891 0.91063 1.10627 0.91790 1.25737 0.95026 1.00716 0.96342 1.70059 1.39859 1.17892 1.27639 0.85514 0.78234 0.78933 0.79018 1.18997 1.20984 1.20429 1.23456 1.00559 0.75885 1.00215 1.21048 0.99056 0.97034 0.93377 1.21984 1.01638 0.99654 0.96975 1.22152 0.94865 1.01581 1.02283 0.92541 0.92177 0.92394 0.92143 0.92656 0.91334 0.89484 0.91440 0.93319 0.92474 0.89911 0.94868 0.92642 0.90365 0.91554 0.93267 0.89824 0.91960 0.94891 0.92801 0.91776 0.89318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.91 71.98 0.71 -1.30 16 2 C -0.13 -2.10 5.93 30.59 0.18 -1.92 16 3 C -0.12 -2.23 3.57 30.59 0.11 -2.12 16 4 C -0.10 -2.47 3.47 30.59 0.11 -2.36 16 5 C -0.09 -2.66 1.92 -11.54 -0.02 -2.69 16 6 H 0.10 2.75 7.87 -2.38 -0.02 2.73 16 7 C 0.52 20.75 7.14 87.66 0.63 21.37 16 8 O -0.60 -27.42 16.77 -3.05 -0.05 -27.47 16 9 N -0.64 -26.62 3.53 -836.80 -2.96 -29.57 16 10 C 0.10 4.48 8.39 86.48 0.73 5.20 16 11 C 0.02 1.16 3.62 -10.88 -0.04 1.12 16 12 C -0.53 -27.13 8.77 25.60 0.22 -26.90 16 13 H 0.06 3.19 7.81 -2.91 -0.02 3.17 16 14 C 0.02 1.14 5.46 84.65 0.46 1.60 16 15 N -0.92 -49.85 13.28 21.45 0.28 -49.56 16 16 Si 0.96 40.83 29.54 68.60 2.03 42.85 16 17 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 18 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 19 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 20 C 0.12 5.11 7.79 86.48 0.67 5.78 16 21 C -0.09 -2.36 2.57 -10.79 -0.03 -2.39 16 22 C -0.15 -3.63 7.75 71.98 0.56 -3.07 16 23 C -0.15 -3.22 8.80 71.98 0.63 -2.59 16 24 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 25 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 28 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 30 H 0.09 1.44 4.07 -2.39 -0.01 1.43 16 31 H 0.07 1.87 5.93 -2.38 -0.01 1.85 16 32 H 0.05 1.39 8.07 -2.39 -0.02 1.37 16 33 H 0.06 2.45 8.14 -2.38 -0.02 2.43 16 34 H 0.08 3.38 8.09 -2.39 -0.02 3.36 16 35 H 0.03 1.78 8.13 -2.39 -0.02 1.76 16 36 H 0.26 13.65 8.31 -92.71 -0.77 12.88 16 37 H 0.08 3.21 8.09 -2.39 -0.02 3.19 16 38 H 0.07 2.77 6.79 -2.39 -0.02 2.75 16 39 H 0.05 1.65 6.11 -2.39 -0.01 1.64 16 40 H 0.08 1.70 5.19 -2.39 -0.01 1.69 16 41 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.03 0.97 7.72 -2.39 -0.02 0.95 16 43 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.09 1.50 4.51 -2.39 -0.01 1.49 16 Total: -1.00 -59.99 347.62 5.17 -54.82 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: 0.94 Total: 19.20 kcal Atomic # 6 Polarization: -15.19 SS G_CDS: 4.92 Total: -10.26 kcal Atomic # 7 Polarization: -76.46 SS G_CDS: -2.67 Total: -79.13 kcal Atomic # 8 Polarization: -27.42 SS G_CDS: -0.05 Total: -27.47 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 2.03 Total: 42.85 kcal Total: -59.99 5.17 -54.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598767440.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.094 kcal (2) G-P(sol) polarization free energy of solvation -59.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds