Wall clock time and date at job start Mon Mar 30 2020 07:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47012 * 2 1 4 4 C 1.53001 * 109.46743 * 179.97438 * 3 2 1 5 5 C 1.53007 * 109.46834 * 184.01596 * 4 3 2 6 6 H 1.08998 * 109.46927 * 305.68239 * 5 4 3 7 7 C 1.50695 * 109.47032 * 185.68309 * 5 4 3 8 8 O 1.21284 * 120.00134 * 333.70686 * 7 5 4 9 9 N 1.34774 * 119.99980 * 153.70475 * 7 5 4 10 10 C 1.47587 * 134.49541 * 176.61429 * 9 7 5 11 11 C 1.53940 * 86.11922 * 155.35660 * 10 9 7 12 12 C 1.50693 * 113.74079 * 137.94988 * 11 10 9 13 13 H 1.08001 * 120.00056 * 1.65642 * 12 11 10 14 14 C 1.37884 * 120.00183 * 181.92102 * 12 11 10 15 15 N 1.31509 * 120.00159 * 179.97438 * 14 12 11 16 16 Si 1.86798 * 119.99687 * 0.02562 * 14 12 11 17 17 H 1.48494 * 109.47702 * 89.99608 * 16 14 12 18 18 H 1.48503 * 109.46821 * 209.99512 * 16 14 12 19 19 H 1.48494 * 109.47103 * 329.99067 * 16 14 12 20 20 C 1.47817 * 134.45588 * 356.48048 * 9 7 5 21 21 C 1.53002 * 109.47044 * 65.68273 * 5 4 3 22 22 C 1.53001 * 109.46879 * 63.72829 * 21 5 4 23 23 C 1.53003 * 109.46743 * 183.72745 * 21 5 4 24 24 H 1.09006 * 109.46851 * 60.00363 * 1 2 3 25 25 H 1.09005 * 109.47567 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47613 * 300.00351 * 1 2 3 27 27 H 1.08993 * 109.47501 * 239.99021 * 2 1 3 28 28 H 1.09007 * 109.46370 * 119.99430 * 2 1 3 29 29 H 1.08993 * 109.47463 * 59.99635 * 3 2 1 30 30 H 1.08997 * 109.46877 * 299.99437 * 3 2 1 31 31 H 1.09001 * 109.47153 * 64.01675 * 4 3 2 32 32 H 1.08992 * 109.47351 * 304.01534 * 4 3 2 33 33 H 1.09001 * 113.76432 * 41.05022 * 10 9 7 34 34 H 1.09004 * 113.86911 * 269.67442 * 10 9 7 35 35 H 1.09001 * 113.74111 * 269.15431 * 11 10 9 36 36 H 0.97003 * 120.00086 * 180.02562 * 15 14 12 37 37 H 1.08995 * 113.77155 * 90.38305 * 20 9 7 38 38 H 1.08996 * 113.83728 * 318.91184 * 20 9 7 39 39 H 1.08997 * 109.46949 * 303.72587 * 21 5 4 40 40 H 1.08997 * 109.47061 * 65.08552 * 22 21 5 41 41 H 1.08997 * 109.46851 * 185.08702 * 22 21 5 42 42 H 1.08997 * 109.47407 * 305.08407 * 22 21 5 43 43 H 1.08997 * 109.47255 * 59.37235 * 23 21 5 44 44 H 1.09002 * 109.46378 * 179.36754 * 23 21 5 45 45 H 1.08998 * 109.47276 * 299.36593 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0799 2.8815 0.1017 6 1 3.6362 3.4808 -0.6933 7 6 5.5804 2.8936 -0.0379 8 8 6.2260 1.9141 0.2700 9 7 6.2048 3.9929 -0.5048 10 6 7.6164 4.3731 -0.7073 11 6 7.0914 5.3487 -1.7761 12 6 7.7576 6.7000 -1.7437 13 1 8.5452 6.8969 -1.0315 14 6 7.3578 7.6869 -2.6197 15 7 7.9389 8.8664 -2.5911 16 14 5.9899 7.3491 -3.8462 17 1 4.6820 7.7038 -3.2392 18 1 6.2069 8.1662 -5.0671 19 1 5.9937 5.9087 -4.2074 20 6 5.7500 5.3008 -1.0220 21 6 3.6893 3.4668 1.4603 22 6 4.3869 2.6821 2.5732 23 6 4.1174 4.9343 1.5254 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8898 28 1 1.8932 -0.5138 0.8901 29 1 1.6766 1.9564 0.8899 30 1 1.6767 1.9562 -0.8900 31 1 3.9337 0.9921 -0.9229 32 1 3.9329 0.8677 0.8526 33 1 8.2341 3.5705 -1.1104 34 1 8.0683 4.8660 0.1535 35 1 7.0474 4.9205 -2.7775 36 1 7.6574 9.5608 -3.2072 37 1 5.6508 6.0669 -0.2531 38 1 4.8804 5.2376 -1.6761 39 1 2.6092 3.3973 1.5888 40 1 5.4648 2.8254 2.4981 41 1 4.0395 3.0396 3.5425 42 1 4.1534 1.6223 2.4719 43 1 3.6291 5.4910 0.7256 44 1 3.8291 5.3543 2.4890 45 1 5.1989 5.0028 1.4081 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598767441.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:49:22 Heat of formation + Delta-G solvation = -37.668230 kcal Electronic energy + Delta-G solvation = -21492.815301 eV Core-core repulsion = 18510.311299 eV Total energy + Delta-G solvation = -2982.504002 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.10774 -37.85883 -36.28950 -34.75078 -32.62877 -30.93988 -29.69606 -27.25157 -26.90038 -25.32383 -24.93997 -22.53512 -21.69593 -20.51409 -19.43132 -17.74549 -17.17826 -16.59080 -15.85434 -15.56566 -15.17446 -14.50950 -14.19628 -13.85905 -13.72277 -13.56569 -13.00482 -12.87208 -12.75994 -12.53449 -12.35916 -12.19434 -11.80796 -11.66464 -11.56026 -11.34058 -11.23569 -11.02923 -10.97961 -10.84946 -10.70825 -10.65232 -10.41350 -10.22671 -10.04949 -9.78241 -9.36808 -8.96402 -8.68765 -7.98569 -6.21587 -4.24087 3.12485 3.17853 3.27413 3.29189 3.47972 4.29049 4.61593 4.66355 4.82439 4.93188 5.00529 5.03490 5.03771 5.23269 5.30119 5.45043 5.56681 5.57925 5.67061 5.69285 5.73147 5.76697 5.81166 5.89739 5.93679 5.99066 6.01076 6.05930 6.07685 6.15935 6.17399 6.18576 6.28753 6.29934 6.32906 6.38546 6.49203 6.50487 6.63075 7.18739 7.54252 8.30960 8.42635 8.70805 8.82080 9.39113 10.90636 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.022659 B = 0.004895 C = 0.004549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.419235 B = 5718.355585 C = 6153.722553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.121 4.121 4 C -0.103 4.103 5 C -0.100 4.100 6 H 0.085 0.915 7 C 0.535 3.465 8 O -0.561 6.561 9 N -0.638 5.638 10 C 0.116 3.884 11 C -0.013 4.013 12 C -0.513 4.513 13 H 0.079 0.921 14 C 0.077 3.923 15 N -0.893 5.893 16 Si 0.871 3.129 17 H -0.274 1.274 18 H -0.286 1.286 19 H -0.263 1.263 20 C 0.087 3.913 21 C -0.081 4.081 22 C -0.149 4.149 23 C -0.160 4.160 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.061 0.939 36 H 0.266 0.734 37 H 0.089 0.911 38 H 0.056 0.944 39 H 0.079 0.921 40 H 0.058 0.942 41 H 0.051 0.949 42 H 0.059 0.941 43 H 0.058 0.942 44 H 0.054 0.946 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.398 -11.575 5.769 18.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.159 4.159 4 C -0.140 4.140 5 C -0.122 4.122 6 H 0.103 0.897 7 C 0.325 3.675 8 O -0.441 6.441 9 N -0.372 5.372 10 C -0.005 4.005 11 C -0.032 4.032 12 C -0.551 4.551 13 H 0.097 0.903 14 C -0.126 4.126 15 N -0.530 5.530 16 Si 0.698 3.302 17 H -0.199 1.199 18 H -0.212 1.212 19 H -0.187 1.187 20 C -0.036 4.036 21 C -0.100 4.100 22 C -0.206 4.206 23 C -0.217 4.217 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.107 0.893 38 H 0.074 0.926 39 H 0.097 0.903 40 H 0.077 0.923 41 H 0.070 0.930 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.142 -12.064 5.913 18.794 hybrid contribution -0.799 0.131 -0.719 1.083 sum -13.941 -11.933 5.194 19.072 Atomic orbital electron populations 1.21779 0.96091 1.01356 1.01729 1.21522 0.95551 0.97087 1.02058 1.21692 0.95355 0.96671 1.02134 1.21476 0.94601 0.94808 1.03161 1.21354 0.92897 0.98630 0.99276 0.89701 1.20165 0.89507 0.81985 0.75867 1.90624 1.67989 1.34071 1.51390 1.50456 1.10402 1.14387 1.61958 1.23227 0.82683 0.96003 0.98634 1.21063 0.91501 0.96226 0.94455 1.20843 1.20717 0.93627 1.19897 0.90251 1.24988 0.96108 0.94878 0.96633 1.69890 1.41663 1.03758 1.37711 0.86923 0.82778 0.79010 0.81478 1.19919 1.21177 1.18732 1.24085 1.00432 0.82176 0.96885 1.21049 1.00378 0.95425 0.93153 1.21912 1.01203 1.00157 0.97311 1.22127 1.02843 0.95039 1.01688 0.92825 0.92987 0.92829 0.92102 0.92043 0.91641 0.92103 0.91892 0.90577 0.91788 0.90280 0.92064 0.92387 0.89323 0.92563 0.90292 0.92331 0.93014 0.92177 0.92288 0.92656 0.91471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 37.16 0.37 -0.83 16 2 C -0.12 -1.13 5.93 -26.73 -0.16 -1.29 16 3 C -0.12 -1.22 5.07 -26.73 -0.14 -1.36 16 4 C -0.10 -1.31 3.99 -26.73 -0.11 -1.42 16 5 C -0.10 -1.43 1.80 -91.77 -0.17 -1.60 16 6 H 0.08 1.18 7.80 -51.93 -0.41 0.77 16 7 C 0.54 9.76 5.45 -10.99 -0.06 9.70 16 8 O -0.56 -11.79 16.36 5.55 0.09 -11.70 16 9 N -0.64 -12.09 2.84 -178.19 -0.51 -12.60 16 10 C 0.12 2.32 8.39 -2.97 -0.02 2.29 16 11 C -0.01 -0.28 2.90 -90.85 -0.26 -0.55 16 12 C -0.51 -13.21 9.33 -34.44 -0.32 -13.53 16 13 H 0.08 2.22 8.06 -52.49 -0.42 1.80 16 14 C 0.08 2.06 5.47 -17.82 -0.10 1.96 16 15 N -0.89 -25.65 13.96 55.43 0.77 -24.88 16 16 Si 0.87 19.83 26.96 -169.99 -4.58 15.25 16 17 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 18 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.26 -5.76 6.29 56.52 0.36 -5.40 16 20 C 0.09 1.66 5.44 -2.83 -0.02 1.64 16 21 C -0.08 -1.02 2.56 -90.62 -0.23 -1.26 16 22 C -0.15 -1.93 8.49 37.16 0.32 -1.61 16 23 C -0.16 -2.13 7.57 37.16 0.28 -1.85 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 29 H 0.06 0.62 6.34 -51.93 -0.33 0.29 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.08 1.02 6.07 -51.93 -0.32 0.71 16 33 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 34 H 0.08 1.56 8.09 -51.93 -0.42 1.14 16 35 H 0.06 1.37 6.70 -51.93 -0.35 1.02 16 36 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 37 H 0.09 1.68 6.80 -51.93 -0.35 1.33 16 38 H 0.06 1.00 7.85 -51.93 -0.41 0.60 16 39 H 0.08 0.85 6.34 -51.93 -0.33 0.52 16 40 H 0.06 0.91 7.03 -51.93 -0.36 0.54 16 41 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.76 6.18 -51.93 -0.32 0.43 16 43 H 0.06 0.76 7.77 -51.93 -0.40 0.36 16 44 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.07 1.05 5.48 -51.93 -0.28 0.76 16 LS Contribution 343.19 15.07 5.17 5.17 Total: -1.00 -28.72 343.19 -7.78 -36.50 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -8.11 Total: 1.93 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: -0.62 Total: -9.68 kcal Atomic # 7 Polarization: -37.75 SS G_CDS: 0.27 Total: -37.48 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.09 Total: -11.70 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -4.58 Total: 15.25 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -28.72 -7.78 -36.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598767441.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.163 kcal (2) G-P(sol) polarization free energy of solvation -28.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds