Wall clock time and date at job start Mon Mar 30 2020 07:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.30994 * 119.99834 * 2 1 4 4 C 1.50697 * 120.00250 * 0.02562 * 3 2 1 5 5 C 1.53002 * 109.47361 * 124.99957 * 4 3 2 6 6 H 1.09007 * 109.53186 * 54.90424 * 5 4 3 7 7 C 1.53119 * 109.50156 * 294.80395 * 5 4 3 8 8 C 1.53120 * 109.15961 * 182.40203 * 7 5 4 9 9 C 1.53033 * 109.27701 * 57.65347 * 8 7 5 10 10 N 1.46846 * 109.52767 * 300.81865 * 9 8 7 11 11 C 1.46901 * 111.00252 * 185.83879 * 10 9 8 12 12 C 1.52993 * 109.47069 * 52.03652 * 11 10 9 13 13 O 1.42903 * 109.47185 * 62.32223 * 12 11 10 14 14 C 1.42895 * 113.99913 * 180.02562 * 13 12 11 15 15 C 1.50710 * 109.46953 * 179.97438 * 14 13 12 16 16 H 1.07998 * 119.99820 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99785 * 179.97438 * 15 14 13 18 18 N 1.31510 * 120.00581 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99693 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47027 * 270.00246 * 19 17 15 21 21 H 1.48496 * 109.47051 * 29.99708 * 19 17 15 22 22 H 1.48493 * 109.46943 * 150.00117 * 19 17 15 23 23 C 1.46846 * 111.19569 * 61.74266 * 10 9 8 24 24 H 1.08993 * 109.47159 * 60.00158 * 1 2 3 25 25 H 1.08998 * 109.46897 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46667 * 299.99633 * 1 2 3 27 27 H 1.08001 * 119.99772 * 180.02562 * 2 1 3 28 28 H 1.08007 * 120.00227 * 180.02562 * 3 2 1 29 29 H 1.08997 * 109.47286 * 5.00039 * 4 3 2 30 30 H 1.09002 * 109.47261 * 244.99963 * 4 3 2 31 31 H 1.08992 * 109.52436 * 302.30494 * 7 5 4 32 32 H 1.09004 * 109.52140 * 62.43632 * 7 5 4 33 33 H 1.08995 * 109.50702 * 177.59632 * 8 7 5 34 34 H 1.09002 * 109.50593 * 297.67780 * 8 7 5 35 35 H 1.09008 * 109.46361 * 180.80006 * 9 8 7 36 36 H 1.09000 * 109.46403 * 60.83989 * 9 8 7 37 37 H 1.09000 * 109.46896 * 292.03583 * 11 10 9 38 38 H 1.09004 * 109.47021 * 172.03732 * 11 10 9 39 39 H 1.08995 * 109.47471 * 302.31809 * 12 11 10 40 40 H 1.08999 * 109.47420 * 182.31911 * 12 11 10 41 41 H 1.08992 * 109.47499 * 59.99948 * 14 13 12 42 42 H 1.09002 * 109.47212 * 299.98986 * 14 13 12 43 43 H 0.96991 * 120.00295 * 179.97438 * 18 17 15 44 44 H 1.09007 * 109.46443 * 58.27277 * 23 10 9 45 45 H 1.08994 * 109.46403 * 178.25282 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1620 1.1345 0.0000 4 6 1.4085 2.4395 0.0006 5 6 1.8705 3.2947 1.1822 6 1 2.9529 3.4169 1.1425 7 6 1.4814 2.6071 2.4938 8 6 1.8935 3.4973 3.6695 9 6 1.2208 4.8646 3.5280 10 7 1.6253 5.4816 2.2583 11 6 1.1093 6.8528 2.1514 12 6 1.4946 7.6418 3.4043 13 8 2.9183 7.7228 3.4971 14 6 3.3862 8.4432 4.6390 15 6 4.8931 8.4651 4.6363 16 1 5.4388 7.9773 3.8422 17 6 5.5750 9.1079 5.6477 18 7 4.9106 9.7023 6.6144 19 14 7.4429 9.1344 5.6447 20 1 7.9559 7.9545 6.3861 21 1 7.9362 9.0921 4.2447 22 1 7.9212 10.3777 6.3008 23 6 1.1984 4.6679 1.1129 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 2.0470 -0.9353 -0.0004 28 1 3.2420 1.1345 -0.0004 29 1 0.3403 2.2424 0.0905 30 1 1.6026 2.9716 -0.9308 31 1 0.4031 2.4496 2.5167 32 1 1.9914 1.6465 2.5668 33 1 1.5809 3.0330 4.6047 34 1 2.9763 3.6222 3.6693 35 1 1.5234 5.5057 4.3560 36 1 0.1380 4.7398 3.5425 37 1 0.0236 6.8262 2.0583 38 1 1.5376 7.3347 1.2725 39 1 1.1010 7.1374 4.2867 40 1 1.0768 8.6467 3.3436 41 1 3.0320 7.9550 5.5469 42 1 3.0077 9.4648 4.6044 43 1 5.3903 10.1542 7.3261 44 1 0.1157 4.5440 1.1387 45 1 1.4850 5.1659 0.1867 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599691452.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:41 Heat of formation + Delta-G solvation = -48.022139 kcal Electronic energy + Delta-G solvation = -20690.454861 eV Core-core repulsion = 17707.501880 eV Total energy + Delta-G solvation = -2982.952981 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.34351 -37.03622 -35.98139 -33.55885 -32.53625 -31.59448 -29.08904 -27.82303 -26.69246 -25.63309 -23.74908 -22.42962 -22.22727 -20.48811 -19.57645 -18.47913 -16.38112 -16.22781 -15.67933 -15.53133 -15.02246 -14.48516 -14.34498 -14.19090 -14.03954 -13.75830 -13.48222 -13.32345 -12.92934 -12.64893 -12.17966 -12.05726 -11.94223 -11.82448 -11.51428 -11.17941 -11.13803 -10.81145 -10.76342 -10.74241 -10.62729 -10.44396 -10.16332 -10.11646 -9.82465 -9.07038 -9.03120 -8.74079 -8.09253 -7.95228 -6.05765 -4.06498 2.07549 3.34129 3.38778 3.44844 4.07231 4.40013 4.65620 4.74190 4.87093 4.96845 4.99143 5.06096 5.18047 5.30765 5.33956 5.39206 5.42806 5.45441 5.54933 5.57984 5.63007 5.67612 5.71288 5.75273 5.81690 5.91113 5.94885 5.95934 6.11395 6.13332 6.16951 6.29702 6.35757 6.42084 6.50628 6.57246 6.70421 7.15641 7.37920 7.40754 7.48913 7.86477 8.22522 8.67466 9.08548 9.58252 11.05999 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.026332 B = 0.003508 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.074075 B = 7979.973366 C = 8486.945702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.174 4.174 3 C -0.147 4.147 4 C -0.093 4.093 5 C -0.079 4.079 6 H 0.082 0.918 7 C -0.110 4.110 8 C -0.117 4.117 9 C 0.053 3.947 10 N -0.522 5.522 11 C 0.063 3.937 12 C 0.061 3.939 13 O -0.378 6.378 14 C 0.194 3.806 15 C -0.509 4.509 16 H 0.067 0.933 17 C 0.055 3.945 18 N -0.901 5.901 19 Si 0.907 3.093 20 H -0.279 1.279 21 H -0.271 1.271 22 H -0.286 1.286 23 C 0.062 3.938 24 H 0.062 0.938 25 H 0.055 0.945 26 H 0.065 0.935 27 H 0.105 0.895 28 H 0.108 0.892 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.022 0.978 37 H 0.035 0.965 38 H 0.080 0.920 39 H 0.038 0.962 40 H 0.039 0.961 41 H 0.002 0.998 42 H 0.002 0.998 43 H 0.263 0.737 44 H 0.025 0.975 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.079 -16.042 -11.467 22.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.193 4.193 3 C -0.166 4.166 4 C -0.130 4.130 5 C -0.098 4.098 6 H 0.100 0.900 7 C -0.148 4.148 8 C -0.155 4.155 9 C -0.075 4.075 10 N -0.247 5.247 11 C -0.065 4.065 12 C -0.017 4.017 13 O -0.297 6.297 14 C 0.119 3.881 15 C -0.547 4.547 16 H 0.085 0.915 17 C -0.146 4.146 18 N -0.541 5.541 19 Si 0.734 3.266 20 H -0.205 1.205 21 H -0.196 1.196 22 H -0.212 1.212 23 C -0.066 4.066 24 H 0.081 0.919 25 H 0.074 0.926 26 H 0.083 0.917 27 H 0.123 0.877 28 H 0.126 0.874 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.104 0.896 36 H 0.041 0.959 37 H 0.053 0.947 38 H 0.099 0.901 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.020 0.980 42 H 0.020 0.980 43 H 0.072 0.928 44 H 0.043 0.957 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.419 -15.975 -11.439 22.240 hybrid contribution -0.084 0.200 0.411 0.464 sum -10.503 -15.775 -11.028 21.927 Atomic orbital electron populations 1.20845 0.93608 1.01759 1.01833 1.22743 0.96123 0.97770 1.02618 1.22821 0.99659 0.94261 0.99814 1.20827 0.99708 0.93986 0.98524 1.21135 1.01499 0.93244 0.93893 0.89985 1.21606 1.00260 0.98421 0.94479 1.21576 1.02102 0.94415 0.97415 1.22165 0.96164 0.96008 0.93128 1.61771 1.60050 1.01340 1.01524 1.22120 0.96030 0.88812 0.99538 1.22347 0.86222 0.97264 0.95894 1.87972 1.16581 1.76696 1.48467 1.20177 0.95027 0.90080 0.82798 1.21068 0.90423 1.34087 1.09150 0.91497 1.24948 0.99245 0.95245 0.95166 1.69961 1.35771 1.35930 1.12406 0.86349 0.84484 0.77389 0.78353 1.20499 1.19610 1.21174 1.22100 0.96464 0.93633 0.94384 0.91913 0.92580 0.91654 0.87694 0.87373 0.91245 0.91017 0.92892 0.91966 0.91928 0.90631 0.89622 0.95948 0.94715 0.90143 0.94417 0.94325 0.98016 0.98031 0.92759 0.95663 0.91026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.91 8.65 36.01 0.31 -0.60 16 2 C -0.17 -1.46 10.26 -36.02 -0.37 -1.83 16 3 C -0.15 -1.34 8.56 -36.03 -0.31 -1.65 16 4 C -0.09 -0.86 4.94 -27.88 -0.14 -1.00 16 5 C -0.08 -0.90 2.34 -90.54 -0.21 -1.11 16 6 H 0.08 1.07 8.14 -51.92 -0.42 0.64 16 7 C -0.11 -1.24 5.06 -26.61 -0.13 -1.38 16 8 C -0.12 -1.57 6.09 -26.65 -0.16 -1.73 16 9 C 0.05 0.79 5.04 -3.84 -0.02 0.77 16 10 N -0.52 -8.20 4.67 -234.67 -1.10 -9.30 16 11 C 0.06 0.98 5.52 -3.83 -0.02 0.96 16 12 C 0.06 1.16 5.56 37.15 0.21 1.36 16 13 O -0.38 -9.35 10.23 -35.23 -0.36 -9.71 16 14 C 0.19 5.43 5.69 36.01 0.20 5.63 16 15 C -0.51 -15.31 9.43 -34.44 -0.32 -15.63 16 16 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 17 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.90 -27.39 13.29 55.43 0.74 -26.66 16 19 Si 0.91 22.25 29.54 -169.99 -5.02 17.23 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 C 0.06 0.78 4.74 -3.83 -0.02 0.76 16 24 H 0.06 0.44 7.85 -51.93 -0.41 0.03 16 25 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.50 7.66 -51.93 -0.40 0.10 16 27 H 0.11 0.80 8.06 -52.49 -0.42 0.37 16 28 H 0.11 0.98 8.06 -52.48 -0.42 0.55 16 29 H 0.07 0.61 5.80 -51.93 -0.30 0.31 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.67 7.47 -51.93 -0.39 0.29 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.09 1.48 5.79 -51.92 -0.30 1.18 16 36 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 37 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.04 0.70 6.05 -51.93 -0.31 0.38 16 40 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 42 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 43 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.03 0.30 8.14 -51.93 -0.42 -0.13 16 45 H 0.07 0.86 8.12 -51.93 -0.42 0.44 16 LS Contribution 353.22 15.07 5.32 5.32 Total: -1.00 -31.47 353.22 -9.92 -41.39 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: -8.42 Total: -4.33 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: -1.08 Total: -13.94 kcal Atomic # 7 Polarization: -35.60 SS G_CDS: -0.36 Total: -35.96 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: -0.36 Total: -9.71 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.47 -9.92 -41.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599691452.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.637 kcal (2) G-P(sol) polarization free energy of solvation -31.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds