Wall clock time and date at job start Mon Mar 30 2020 07:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.31000 * 119.99670 * 2 1 4 4 C 1.50693 * 120.00543 * 0.02562 * 3 2 1 5 5 C 1.52997 * 109.47431 * 124.99882 * 4 3 2 6 6 H 1.09005 * 109.50570 * 304.91790 * 5 4 3 7 7 C 1.53119 * 109.50570 * 65.00050 * 5 4 3 8 8 C 1.53122 * 109.16128 * 177.59568 * 7 5 4 9 9 C 1.53037 * 109.27811 * 302.34360 * 8 7 5 10 10 N 1.46844 * 109.52058 * 59.18627 * 9 8 7 11 11 C 1.46899 * 110.99896 * 174.16029 * 10 9 8 12 12 C 1.53003 * 109.47089 * 195.88710 * 11 10 9 13 13 O 1.42894 * 109.47285 * 64.17162 * 12 11 10 14 14 C 1.42898 * 114.00282 * 180.02562 * 13 12 11 15 15 C 1.50700 * 109.47288 * 180.02562 * 14 13 12 16 16 H 1.08005 * 120.00077 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99962 * 180.02562 * 15 14 13 18 18 N 1.31509 * 120.00279 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99914 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47581 * 89.99695 * 19 17 15 21 21 H 1.48503 * 109.47113 * 209.99700 * 19 17 15 22 22 H 1.48505 * 109.47277 * 329.99698 * 19 17 15 23 23 C 1.46855 * 111.19678 * 298.24841 * 10 9 8 24 24 H 1.08992 * 109.47277 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46753 * 299.99959 * 1 2 3 26 26 H 1.09001 * 109.47184 * 59.99629 * 1 2 3 27 27 H 1.07992 * 120.00213 * 179.97438 * 2 1 3 28 28 H 1.08005 * 119.99603 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47259 * 244.99898 * 4 3 2 30 30 H 1.09007 * 109.47253 * 4.99937 * 4 3 2 31 31 H 1.09000 * 109.52106 * 297.50426 * 7 5 4 32 32 H 1.09000 * 109.52275 * 57.62956 * 7 5 4 33 33 H 1.08999 * 109.50068 * 62.29108 * 8 7 5 34 34 H 1.09005 * 109.50021 * 182.36581 * 8 7 5 35 35 H 1.09002 * 109.45907 * 179.19629 * 9 8 7 36 36 H 1.08994 * 109.46366 * 299.17463 * 9 8 7 37 37 H 1.09000 * 109.47246 * 315.88342 * 11 10 9 38 38 H 1.08996 * 109.47473 * 75.88387 * 11 10 9 39 39 H 1.09001 * 109.46911 * 184.16802 * 12 11 10 40 40 H 1.08995 * 109.47048 * 304.16918 * 12 11 10 41 41 H 1.09001 * 109.46607 * 299.99795 * 14 13 12 42 42 H 1.08994 * 109.47366 * 59.99746 * 14 13 12 43 43 H 0.96998 * 120.00089 * 180.02562 * 18 17 15 44 44 H 1.08997 * 109.46613 * 301.73493 * 23 10 9 45 45 H 1.08998 * 109.46274 * 181.75992 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1620 1.1345 0.0000 4 6 1.4086 2.4396 0.0006 5 6 1.8705 3.2947 1.1822 6 1 1.7576 2.7290 2.1070 7 6 3.3412 3.6766 0.9929 8 6 3.7783 4.5813 2.1483 9 6 2.8758 5.8165 2.1922 10 7 1.4801 5.3982 2.3755 11 6 0.6020 6.5611 2.5608 12 6 -0.7399 6.1008 3.1337 13 8 -0.5375 5.5478 4.4356 14 6 -1.7349 5.0844 5.0630 15 6 -1.4055 4.5253 6.4231 16 1 -0.3838 4.5237 6.7733 17 6 -2.4082 4.0150 7.2200 18 7 -3.6522 4.0165 6.7934 19 14 -1.9998 3.3214 8.9057 20 1 -2.0844 4.4028 9.9198 21 1 -2.9664 2.2467 9.2462 22 1 -0.6237 2.7631 8.8911 23 6 1.0232 4.5672 1.2542 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 2.0470 -0.9352 0.0004 28 1 3.2420 1.1345 -0.0004 29 1 1.6027 2.9716 -0.9307 30 1 0.3402 2.2424 0.0905 31 1 3.9535 2.7749 0.9845 32 1 3.4610 4.2071 0.0483 33 1 3.6953 4.0363 3.0886 34 1 4.8125 4.8907 1.9970 35 1 3.1753 6.4558 3.0227 36 1 2.9696 6.3682 1.2569 37 1 1.0699 7.2634 3.2507 38 1 0.4386 7.0498 1.6003 39 1 -1.4171 6.9522 3.2019 40 1 -1.1732 5.3434 2.4806 41 1 -2.4330 5.9145 5.1711 42 1 -2.1884 4.3057 4.4498 43 1 -4.3577 3.6578 7.3542 44 1 1.1259 5.1249 0.3233 45 1 -0.0227 4.2992 1.4033 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599691454.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:46 Heat of formation + Delta-G solvation = -50.232256 kcal Electronic energy + Delta-G solvation = -20828.394236 eV Core-core repulsion = 17845.345416 eV Total energy + Delta-G solvation = -2983.048819 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.29371 -36.84506 -35.99839 -33.60795 -32.54812 -31.60914 -28.88570 -27.82508 -26.67694 -25.51567 -24.00883 -22.23586 -21.80638 -20.91499 -19.60021 -18.29786 -16.33215 -16.14695 -15.78754 -15.58084 -14.89167 -14.41923 -14.29377 -14.12488 -14.01403 -13.73683 -13.41581 -13.11413 -12.83573 -12.73356 -12.38991 -12.00235 -11.84423 -11.68841 -11.39495 -11.13525 -11.10332 -10.92888 -10.78640 -10.69998 -10.59996 -10.44682 -10.18382 -10.06773 -9.82088 -9.00786 -8.97141 -8.71819 -8.06380 -7.95781 -6.04052 -4.04561 2.19436 3.34829 3.39523 3.45798 4.06122 4.41543 4.68290 4.85681 4.90069 4.97873 5.02582 5.09697 5.24935 5.32507 5.36716 5.43970 5.50599 5.54898 5.57226 5.63591 5.65589 5.68525 5.74668 5.83422 5.86846 5.93674 5.98457 6.05864 6.08540 6.11278 6.16982 6.27229 6.36477 6.38213 6.54192 6.63194 6.82695 7.18870 7.36981 7.38912 7.52199 7.88171 8.25101 8.71196 9.10745 9.60113 11.07736 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.014013 B = 0.004660 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.690191 B = 6006.604670 C = 7033.685825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.167 4.167 3 C -0.156 4.156 4 C -0.092 4.092 5 C -0.079 4.079 6 H 0.084 0.916 7 C -0.113 4.113 8 C -0.118 4.118 9 C 0.058 3.942 10 N -0.523 5.523 11 C 0.062 3.938 12 C 0.068 3.932 13 O -0.379 6.379 14 C 0.194 3.806 15 C -0.508 4.508 16 H 0.066 0.934 17 C 0.055 3.945 18 N -0.901 5.901 19 Si 0.906 3.094 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.271 1.271 23 C 0.062 3.938 24 H 0.056 0.944 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.105 0.895 28 H 0.107 0.893 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.024 0.976 37 H 0.079 0.921 38 H 0.037 0.963 39 H 0.037 0.963 40 H 0.034 0.966 41 H 0.001 0.999 42 H 0.002 0.998 43 H 0.263 0.737 44 H 0.025 0.975 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.845 -1.365 -16.015 19.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.185 4.185 3 C -0.174 4.174 4 C -0.129 4.129 5 C -0.098 4.098 6 H 0.102 0.898 7 C -0.150 4.150 8 C -0.155 4.155 9 C -0.070 4.070 10 N -0.247 5.247 11 C -0.066 4.066 12 C -0.010 4.010 13 O -0.298 6.298 14 C 0.120 3.880 15 C -0.547 4.547 16 H 0.084 0.916 17 C -0.145 4.145 18 N -0.541 5.541 19 Si 0.733 3.267 20 H -0.205 1.205 21 H -0.212 1.212 22 H -0.196 1.196 23 C -0.066 4.066 24 H 0.075 0.925 25 H 0.089 0.911 26 H 0.081 0.919 27 H 0.123 0.877 28 H 0.125 0.875 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.042 0.958 37 H 0.097 0.903 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.053 0.947 41 H 0.019 0.981 42 H 0.020 0.980 43 H 0.072 0.928 44 H 0.043 0.957 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 11.812 -1.704 -15.435 19.511 hybrid contribution -0.182 0.102 0.017 0.209 sum 11.631 -1.603 -15.418 19.379 Atomic orbital electron populations 1.20884 0.93337 1.02024 1.02201 1.22799 0.96361 0.97716 1.01605 1.22785 0.99410 0.94300 1.00884 1.20798 1.00098 0.93859 0.98176 1.21127 0.94405 0.95390 0.98868 0.89773 1.21640 0.96123 0.99239 0.98011 1.21585 0.97759 0.96492 0.99709 1.22061 0.88794 0.96642 0.99461 1.61731 1.01368 1.19845 1.41783 1.22121 0.94042 0.91924 0.98502 1.22230 0.94541 0.96471 0.87752 1.87943 1.34626 1.79992 1.27268 1.20159 0.82322 0.93030 0.92497 1.21068 0.94793 1.39075 0.99732 0.91561 1.24936 0.94727 0.96047 0.98838 1.69965 0.99785 1.46693 1.37622 0.86366 0.78289 0.78621 0.83395 1.20535 1.21157 1.19615 1.22147 0.99700 0.93780 0.90981 0.92460 0.91074 0.91867 0.87719 0.87540 0.91522 0.90790 0.91962 0.92708 0.90757 0.92000 0.90856 0.95770 0.90273 0.94478 0.94494 0.94744 0.98122 0.97988 0.92790 0.95685 0.90503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.29 8.65 36.01 0.31 -0.98 16 2 C -0.17 -1.72 10.26 -36.02 -0.37 -2.09 16 3 C -0.16 -1.62 9.02 -36.03 -0.33 -1.95 16 4 C -0.09 -0.99 4.94 -27.89 -0.14 -1.13 16 5 C -0.08 -0.99 2.34 -90.54 -0.21 -1.20 16 6 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 7 C -0.11 -1.22 5.05 -26.61 -0.13 -1.36 16 8 C -0.12 -1.37 6.09 -26.65 -0.16 -1.54 16 9 C 0.06 0.75 5.44 -3.84 -0.02 0.73 16 10 N -0.52 -8.17 4.55 -234.66 -1.07 -9.24 16 11 C 0.06 0.97 5.36 -3.82 -0.02 0.95 16 12 C 0.07 1.31 6.08 37.16 0.23 1.54 16 13 O -0.38 -9.50 10.26 -35.23 -0.36 -9.86 16 14 C 0.19 5.50 5.69 36.01 0.20 5.70 16 15 C -0.51 -15.38 9.43 -34.44 -0.32 -15.70 16 16 H 0.07 2.01 7.81 -52.48 -0.41 1.59 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -27.47 13.29 55.43 0.74 -26.74 16 19 Si 0.91 22.32 29.54 -169.99 -5.02 17.30 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 23 C 0.06 0.86 4.59 -3.83 -0.02 0.84 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.07 0.81 7.66 -51.93 -0.40 0.41 16 26 H 0.06 0.59 7.85 -51.93 -0.41 0.18 16 27 H 0.10 0.96 8.06 -52.49 -0.42 0.53 16 28 H 0.11 1.01 7.02 -52.48 -0.37 0.64 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.83 5.80 -51.92 -0.30 0.53 16 31 H 0.06 0.62 6.84 -51.93 -0.36 0.27 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.95 7.96 -51.93 -0.41 0.53 16 36 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16 37 H 0.08 1.24 7.87 -51.93 -0.41 0.83 16 38 H 0.04 0.49 8.06 -51.93 -0.42 0.07 16 39 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.03 0.65 6.51 -51.93 -0.34 0.31 16 41 H 0.00 0.03 8.14 -51.93 -0.42 -0.39 16 42 H 0.00 0.07 8.14 -51.93 -0.42 -0.36 16 43 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 44 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.08 1.17 6.42 -51.93 -0.33 0.83 16 LS Contribution 353.10 15.07 5.32 5.32 Total: -1.00 -31.83 353.10 -9.83 -41.66 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -8.36 Total: -3.80 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: -1.08 Total: -14.65 kcal Atomic # 7 Polarization: -35.65 SS G_CDS: -0.33 Total: -35.98 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: -0.36 Total: -9.86 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.83 -9.83 -41.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599691454.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.572 kcal (2) G-P(sol) polarization free energy of solvation -31.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds