Wall clock time and date at job start Mon Mar 30 2020 07:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.31000 * 119.99670 * 2 1 4 4 C 1.50693 * 120.00543 * 0.02562 * 3 2 1 5 5 C 1.52997 * 109.47431 * 124.99882 * 4 3 2 6 6 H 1.09005 * 109.50570 * 304.91790 * 5 4 3 7 7 C 1.53119 * 109.50570 * 65.00050 * 5 4 3 8 8 C 1.53122 * 109.16128 * 177.59568 * 7 5 4 9 9 C 1.53037 * 109.27811 * 302.34360 * 8 7 5 10 10 N 1.46844 * 109.52058 * 59.18627 * 9 8 7 11 11 C 1.46899 * 110.99896 * 174.16029 * 10 9 8 12 12 C 1.53003 * 109.47089 * 195.88710 * 11 10 9 13 13 O 1.42894 * 109.47285 * 64.17162 * 12 11 10 14 14 C 1.42898 * 114.00282 * 180.02562 * 13 12 11 15 15 C 1.50700 * 109.47288 * 180.02562 * 14 13 12 16 16 H 1.08005 * 120.00077 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99962 * 180.02562 * 15 14 13 18 18 N 1.31509 * 120.00279 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99914 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47581 * 89.99695 * 19 17 15 21 21 H 1.48503 * 109.47113 * 209.99700 * 19 17 15 22 22 H 1.48505 * 109.47277 * 329.99698 * 19 17 15 23 23 C 1.46855 * 111.19678 * 298.24841 * 10 9 8 24 24 H 1.08992 * 109.47277 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46753 * 299.99959 * 1 2 3 26 26 H 1.09001 * 109.47184 * 59.99629 * 1 2 3 27 27 H 1.07992 * 120.00213 * 179.97438 * 2 1 3 28 28 H 1.08005 * 119.99603 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47259 * 244.99898 * 4 3 2 30 30 H 1.09007 * 109.47253 * 4.99937 * 4 3 2 31 31 H 1.09000 * 109.52106 * 297.50426 * 7 5 4 32 32 H 1.09000 * 109.52275 * 57.62956 * 7 5 4 33 33 H 1.08999 * 109.50068 * 62.29108 * 8 7 5 34 34 H 1.09005 * 109.50021 * 182.36581 * 8 7 5 35 35 H 1.09002 * 109.45907 * 179.19629 * 9 8 7 36 36 H 1.08994 * 109.46366 * 299.17463 * 9 8 7 37 37 H 1.09000 * 109.47246 * 315.88342 * 11 10 9 38 38 H 1.08996 * 109.47473 * 75.88387 * 11 10 9 39 39 H 1.09001 * 109.46911 * 184.16802 * 12 11 10 40 40 H 1.08995 * 109.47048 * 304.16918 * 12 11 10 41 41 H 1.09001 * 109.46607 * 299.99795 * 14 13 12 42 42 H 1.08994 * 109.47366 * 59.99746 * 14 13 12 43 43 H 0.96998 * 120.00089 * 180.02562 * 18 17 15 44 44 H 1.08997 * 109.46613 * 301.73493 * 23 10 9 45 45 H 1.08998 * 109.46274 * 181.75992 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1620 1.1345 0.0000 4 6 1.4086 2.4396 0.0006 5 6 1.8705 3.2947 1.1822 6 1 1.7576 2.7290 2.1070 7 6 3.3412 3.6766 0.9929 8 6 3.7783 4.5813 2.1483 9 6 2.8758 5.8165 2.1922 10 7 1.4801 5.3982 2.3755 11 6 0.6020 6.5611 2.5608 12 6 -0.7399 6.1008 3.1337 13 8 -0.5375 5.5478 4.4356 14 6 -1.7349 5.0844 5.0630 15 6 -1.4055 4.5253 6.4231 16 1 -0.3838 4.5237 6.7733 17 6 -2.4082 4.0150 7.2200 18 7 -3.6522 4.0165 6.7934 19 14 -1.9998 3.3214 8.9057 20 1 -2.0844 4.4028 9.9198 21 1 -2.9664 2.2467 9.2462 22 1 -0.6237 2.7631 8.8911 23 6 1.0232 4.5672 1.2542 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 2.0470 -0.9352 0.0004 28 1 3.2420 1.1345 -0.0004 29 1 1.6027 2.9716 -0.9307 30 1 0.3402 2.2424 0.0905 31 1 3.9535 2.7749 0.9845 32 1 3.4610 4.2071 0.0483 33 1 3.6953 4.0363 3.0886 34 1 4.8125 4.8907 1.9970 35 1 3.1753 6.4558 3.0227 36 1 2.9696 6.3682 1.2569 37 1 1.0699 7.2634 3.2507 38 1 0.4386 7.0498 1.6003 39 1 -1.4171 6.9522 3.2019 40 1 -1.1732 5.3434 2.4806 41 1 -2.4330 5.9145 5.1711 42 1 -2.1884 4.3057 4.4498 43 1 -4.3577 3.6578 7.3542 44 1 1.1259 5.1249 0.3233 45 1 -0.0227 4.2992 1.4033 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599691454.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:45 Heat of formation + Delta-G solvation = -69.308935 kcal Electronic energy + Delta-G solvation = -20829.221462 eV Core-core repulsion = 17845.345416 eV Total energy + Delta-G solvation = -2983.876046 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.36933 -38.49783 -37.13484 -35.08673 -34.42751 -32.60189 -30.45653 -28.89656 -28.53198 -26.40035 -25.21205 -24.45275 -22.82254 -22.22725 -20.60356 -19.13818 -18.60505 -17.46945 -17.31761 -16.68441 -16.44765 -16.00606 -15.81177 -15.45565 -15.07764 -14.81603 -14.64964 -14.30220 -14.07941 -13.85959 -13.60885 -13.53184 -13.12370 -12.96202 -12.76055 -12.68666 -12.52548 -12.32490 -12.27100 -12.07002 -11.91862 -11.64699 -11.56650 -11.25948 -11.16554 -10.93311 -10.84081 -10.16833 -9.79800 -9.09216 -8.31386 -6.43280 1.37878 1.39052 1.42296 1.54491 2.35388 2.94589 3.02127 3.26457 3.76496 3.92190 3.93517 4.12321 4.20462 4.28814 4.31692 4.35192 4.43534 4.49885 4.53578 4.56820 4.65778 4.67107 4.68696 4.79664 4.81909 4.85421 4.88852 4.95572 4.99729 5.05131 5.11662 5.16161 5.19839 5.23073 5.28747 5.44386 5.55355 5.56639 5.81936 5.98240 6.01333 6.21612 6.30976 6.58139 6.87586 7.29035 8.81160 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.014013 B = 0.004660 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.690191 B = 6006.604670 C = 7033.685825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.175 4.175 3 C -0.161 4.161 4 C -0.087 4.087 5 C -0.075 4.075 6 H 0.048 0.952 7 C -0.106 4.106 8 C -0.116 4.116 9 C 0.058 3.942 10 N -0.555 5.555 11 C 0.070 3.930 12 C 0.059 3.941 13 O -0.395 6.395 14 C 0.210 3.790 15 C -0.545 4.545 16 H 0.058 0.942 17 C 0.007 3.993 18 N -0.931 5.931 19 Si 0.982 3.018 20 H -0.266 1.266 21 H -0.273 1.273 22 H -0.266 1.266 23 C 0.064 3.936 24 H 0.066 0.934 25 H 0.051 0.949 26 H 0.069 0.931 27 H 0.118 0.882 28 H 0.120 0.880 29 H 0.083 0.917 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.049 0.951 34 H 0.087 0.913 35 H 0.069 0.931 36 H 0.044 0.956 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.046 0.954 40 H 0.034 0.966 41 H -0.017 1.017 42 H -0.020 1.020 43 H 0.270 0.730 44 H 0.046 0.954 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.400 -1.457 -16.606 21.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.193 4.193 3 C -0.179 4.179 4 C -0.124 4.124 5 C -0.094 4.094 6 H 0.066 0.934 7 C -0.143 4.143 8 C -0.154 4.154 9 C -0.069 4.069 10 N -0.280 5.280 11 C -0.057 4.057 12 C -0.019 4.019 13 O -0.314 6.314 14 C 0.135 3.865 15 C -0.582 4.582 16 H 0.077 0.923 17 C -0.191 4.191 18 N -0.571 5.571 19 Si 0.805 3.195 20 H -0.191 1.191 21 H -0.198 1.198 22 H -0.191 1.191 23 C -0.064 4.064 24 H 0.085 0.915 25 H 0.070 0.930 26 H 0.088 0.912 27 H 0.136 0.864 28 H 0.138 0.862 29 H 0.101 0.899 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.067 0.933 34 H 0.105 0.895 35 H 0.087 0.913 36 H 0.063 0.937 37 H 0.097 0.903 38 H 0.088 0.912 39 H 0.064 0.936 40 H 0.052 0.948 41 H 0.001 0.999 42 H -0.003 1.003 43 H 0.079 0.921 44 H 0.064 0.936 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 13.375 -1.783 -16.051 20.969 hybrid contribution -0.698 0.159 0.131 0.727 sum 12.678 -1.624 -15.920 20.416 Atomic orbital electron populations 1.20887 0.93626 1.02458 1.01579 1.22990 0.96391 0.98409 1.01500 1.22904 1.00087 0.93985 1.00905 1.20744 0.99537 0.94104 0.98046 1.21044 0.95797 0.94580 0.97945 0.93365 1.21608 0.94608 0.99752 0.98374 1.21592 0.98980 0.95934 0.98894 1.22112 0.87214 0.97310 1.00255 1.61674 1.02812 1.20254 1.43255 1.22026 0.91976 0.92053 0.99676 1.22591 0.97572 0.96490 0.85238 1.87898 1.33187 1.80313 1.30028 1.19768 0.82993 0.91609 0.92119 1.21365 0.94877 1.40883 1.01116 0.92326 1.25948 0.94296 0.95627 1.03271 1.70069 1.00854 1.46720 1.39446 0.85204 0.78394 0.78295 0.77642 1.19087 1.19779 1.19071 1.22125 0.98589 0.94385 0.91298 0.91523 0.93037 0.91183 0.86424 0.86240 0.89863 0.91857 0.90875 0.90895 0.93262 0.89467 0.91283 0.93750 0.90295 0.91212 0.93596 0.94806 0.99889 1.00272 0.92067 0.93610 0.92881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.59 8.65 71.24 0.62 -1.98 16 2 C -0.17 -3.45 10.26 25.65 0.26 -3.19 16 3 C -0.16 -3.15 9.02 25.64 0.23 -2.92 16 4 C -0.09 -1.80 4.94 29.84 0.15 -1.65 16 5 C -0.07 -1.84 2.34 -10.74 -0.03 -1.86 16 6 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 7 C -0.11 -2.08 5.05 30.67 0.15 -1.92 16 8 C -0.12 -2.52 6.09 30.65 0.19 -2.34 16 9 C 0.06 1.41 5.44 86.33 0.47 1.88 16 10 N -0.55 -17.09 4.55 -896.34 -4.08 -21.17 16 11 C 0.07 2.15 5.36 86.30 0.46 2.62 16 12 C 0.06 2.30 6.08 71.98 0.44 2.74 16 13 O -0.39 -20.51 10.26 -148.98 -1.53 -22.04 16 14 C 0.21 12.42 5.69 71.24 0.41 12.83 16 15 C -0.54 -33.86 9.43 25.60 0.24 -33.62 16 16 H 0.06 3.64 7.81 -2.91 -0.02 3.62 16 17 C 0.01 0.41 5.46 84.66 0.46 0.87 16 18 N -0.93 -57.47 13.29 21.45 0.28 -57.18 16 19 Si 0.98 45.73 29.54 68.60 2.03 47.76 16 20 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 21 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 22 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 23 C 0.06 1.73 4.59 86.33 0.40 2.13 16 24 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.05 1.23 7.66 -2.39 -0.02 1.21 16 26 H 0.07 1.28 7.85 -2.39 -0.02 1.26 16 27 H 0.12 1.98 8.06 -2.91 -0.02 1.96 16 28 H 0.12 2.01 7.02 -2.91 -0.02 1.99 16 29 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.06 1.43 5.80 -2.38 -0.01 1.42 16 31 H 0.07 1.29 6.84 -2.39 -0.02 1.27 16 32 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 35 H 0.07 1.70 7.96 -2.39 -0.02 1.68 16 36 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.08 2.40 7.87 -2.39 -0.02 2.38 16 38 H 0.07 1.69 8.06 -2.39 -0.02 1.67 16 39 H 0.05 1.70 8.14 -2.39 -0.02 1.69 16 40 H 0.03 1.33 6.51 -2.39 -0.02 1.31 16 41 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 42 H -0.02 -1.27 8.14 -2.39 -0.02 -1.29 16 43 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 44 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.05 1.66 6.42 -2.39 -0.02 1.65 16 Total: -1.00 -69.59 353.10 2.07 -67.52 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: 0.91 Total: 11.51 kcal Atomic # 6 Polarization: -30.86 SS G_CDS: 4.45 Total: -26.41 kcal Atomic # 7 Polarization: -74.56 SS G_CDS: -3.79 Total: -78.35 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -1.53 Total: -22.04 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -69.59 2.07 -67.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599691454.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.788 kcal (2) G-P(sol) polarization free energy of solvation -69.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds