Wall clock time and date at job start Mon Mar 30 2020 07:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 6 6 H 1.09004 * 115.54939 * 325.72895 * 5 2 1 7 7 C 1.53008 * 117.49935 * 111.38925 * 5 2 1 8 8 C 1.52995 * 117.50420 * 180.02562 * 5 2 1 9 9 H 1.09005 * 117.49674 * 0.02562 * 8 5 2 10 10 C 1.50694 * 117.50371 * 145.02313 * 8 5 2 11 11 O 1.21281 * 119.99776 * 0.02562 * 10 8 5 12 12 N 1.34776 * 120.00611 * 180.02562 * 10 8 5 13 13 C 1.46497 * 120.00351 * 180.02562 * 12 10 8 14 14 C 1.53004 * 109.46950 * 180.02562 * 13 12 10 15 15 C 1.53003 * 109.46886 * 299.99389 * 14 13 12 16 16 C 1.52993 * 109.47318 * 59.99836 * 14 13 12 17 17 C 1.50706 * 109.46898 * 179.97438 * 14 13 12 18 18 H 1.08004 * 119.99917 * 359.97438 * 17 14 13 19 19 C 1.37875 * 120.00176 * 179.97438 * 17 14 13 20 20 N 1.31519 * 119.99737 * 0.02562 * 19 17 14 21 21 Si 1.86793 * 120.00336 * 179.97438 * 19 17 14 22 22 H 1.48500 * 109.47210 * 90.00310 * 21 19 17 23 23 H 1.48495 * 109.47485 * 210.00382 * 21 19 17 24 24 H 1.48502 * 109.47328 * 330.00348 * 21 19 17 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 29 29 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 31 31 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 32 32 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 33 33 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 34 34 H 1.08999 * 117.49784 * 214.98701 * 7 5 2 35 35 H 1.08999 * 117.49317 * 0.02562 * 7 5 2 36 36 H 0.97003 * 119.99686 * 0.02562 * 12 10 8 37 37 H 1.09004 * 109.47175 * 299.99315 * 13 12 10 38 38 H 1.09003 * 109.47477 * 59.99936 * 13 12 10 39 39 H 1.08999 * 109.46537 * 60.00602 * 15 14 13 40 40 H 1.09000 * 109.46736 * 180.02562 * 15 14 13 41 41 H 1.08999 * 109.47518 * 300.00610 * 15 14 13 42 42 H 1.08996 * 109.47219 * 60.00248 * 16 14 13 43 43 H 1.09000 * 109.47171 * 179.97438 * 16 14 13 44 44 H 1.09001 * 109.46950 * 300.00047 * 16 14 13 45 45 H 0.97003 * 120.00033 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 2.0400 -0.7213 -1.2492 6 1 1.4305 -1.5580 -1.5908 7 6 2.7422 0.1226 -2.3150 8 6 3.5550 -0.8287 -1.4340 9 1 4.1884 -0.3858 -0.6653 10 6 4.0907 -2.0832 -2.0743 11 8 3.3281 -2.9599 -2.4217 12 7 5.4173 -2.2310 -2.2610 13 6 5.9380 -3.4504 -2.8840 14 6 7.4628 -3.3645 -2.9767 15 6 7.8547 -2.1519 -3.8235 16 6 8.0518 -3.2178 -1.5724 17 6 7.9985 -4.6192 -3.6171 18 1 7.3194 -5.3999 -3.9265 19 6 9.3556 -4.7704 -3.8079 20 7 10.1826 -3.8199 -3.4307 21 14 10.0197 -6.3258 -4.6009 22 1 10.0847 -6.1420 -6.0730 23 1 11.3803 -6.6067 -4.0766 24 1 9.1220 -7.4654 -4.2836 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.6768 1.9562 0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 -1.7489 1.2492 32 1 3.1300 -0.7217 1.2490 33 1 1.6767 -0.2075 2.1393 34 1 2.5950 -0.1592 -3.3576 35 1 2.8411 1.1915 -2.1259 36 1 6.0273 -1.5300 -1.9828 37 1 5.6592 -4.3143 -2.2805 38 1 5.5181 -3.5552 -3.8844 39 1 7.4673 -1.2447 -3.3599 40 1 8.9410 -2.0910 -3.8899 41 1 7.4351 -2.2564 -4.8240 42 1 7.7726 -4.0817 -0.9692 43 1 9.1381 -3.1571 -1.6384 44 1 7.6643 -2.3105 -1.1089 45 1 11.1375 -3.9265 -3.5646 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699781160.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:03 Heat of formation + Delta-G solvation = -41.041724 kcal Electronic energy + Delta-G solvation = -21022.462267 eV Core-core repulsion = 18039.811979 eV Total energy + Delta-G solvation = -2982.650288 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.02225 -38.19774 -36.27882 -33.81448 -33.21341 -30.82008 -27.59028 -27.41850 -26.06942 -25.71950 -25.20977 -23.20543 -22.81955 -19.79553 -18.78275 -18.40895 -17.22951 -15.86314 -15.69820 -15.07868 -14.70093 -14.50542 -14.31608 -13.99846 -13.57793 -13.00315 -12.92469 -12.64687 -12.55381 -12.40907 -12.18097 -11.84696 -11.74075 -11.38436 -11.29569 -11.18349 -11.12962 -10.86111 -10.70956 -10.68031 -10.38724 -10.22924 -10.18998 -9.97984 -9.62630 -9.51386 -9.19011 -8.77808 -8.43542 -8.28140 -6.01738 -4.11787 2.90499 3.28534 3.35460 3.39360 3.67519 3.94496 4.40019 4.55647 4.63765 4.79092 4.97060 5.05851 5.10819 5.24968 5.35583 5.39905 5.49237 5.52483 5.61334 5.65951 5.76630 5.79999 5.90914 5.96663 6.02703 6.13743 6.22841 6.26631 6.33404 6.34628 6.52270 6.79656 6.83671 6.95322 7.02735 7.07366 7.36603 7.56339 7.69854 8.01590 8.09469 8.18619 8.39360 8.76684 8.89311 9.53993 10.99662 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.042083 B = 0.003580 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.197202 B = 7820.328799 C = 7936.704894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.040 4.040 3 C -0.146 4.146 4 C -0.141 4.141 5 C -0.109 4.109 6 H 0.116 0.884 7 C -0.155 4.155 8 C -0.184 4.184 9 H 0.119 0.881 10 C 0.532 3.468 11 O -0.555 6.555 12 N -0.713 5.713 13 C 0.132 3.868 14 C 0.056 3.944 15 C -0.130 4.130 16 C -0.130 4.130 17 C -0.506 4.506 18 H 0.057 0.943 19 C 0.066 3.934 20 N -0.886 5.886 21 Si 0.893 3.107 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.096 0.904 35 H 0.107 0.893 36 H 0.398 0.602 37 H 0.054 0.946 38 H 0.053 0.947 39 H 0.006 0.994 40 H 0.085 0.915 41 H 0.026 0.974 42 H 0.026 0.974 43 H 0.085 0.915 44 H 0.006 0.994 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.172 11.072 7.003 18.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.040 4.040 3 C -0.203 4.203 4 C -0.198 4.198 5 C -0.128 4.128 6 H 0.134 0.866 7 C -0.192 4.192 8 C -0.205 4.205 9 H 0.137 0.863 10 C 0.318 3.682 11 O -0.434 6.434 12 N -0.362 5.362 13 C 0.009 3.991 14 C 0.055 3.945 15 C -0.188 4.188 16 C -0.188 4.188 17 C -0.544 4.544 18 H 0.075 0.925 19 C -0.135 4.135 20 N -0.525 5.525 21 Si 0.721 3.279 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.199 1.199 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.115 0.885 35 H 0.125 0.875 36 H 0.233 0.767 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.025 0.975 40 H 0.104 0.896 41 H 0.045 0.955 42 H 0.045 0.955 43 H 0.104 0.896 44 H 0.025 0.975 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.480 10.453 6.749 18.345 hybrid contribution 0.870 -0.550 -0.315 1.077 sum -12.610 9.903 6.434 17.276 Atomic orbital electron populations 1.21828 0.94126 1.01972 1.01561 1.20096 0.95578 0.94744 0.93601 1.22027 1.01183 0.95423 1.01707 1.21856 1.01304 1.00438 0.96190 1.22407 0.92397 1.01332 0.96670 0.86632 1.23181 1.02079 0.97202 0.96743 1.22305 0.95864 0.98238 1.04098 0.86345 1.19618 0.82759 0.87055 0.78774 1.90647 1.57490 1.43169 1.52135 1.46242 1.06403 1.22228 1.61360 1.21711 0.96833 0.84396 0.96124 1.18356 0.87244 0.95440 0.93453 1.21825 1.04283 0.95005 0.97697 1.21822 1.04419 0.96185 0.96372 1.20998 0.92006 1.01989 1.39457 0.92463 1.24881 0.96890 0.96432 0.95325 1.69808 1.02919 1.32492 1.47267 0.86569 0.78195 0.83599 0.79502 1.20714 1.21266 1.19898 0.92532 0.92692 0.92474 0.92682 0.92426 0.92162 0.92403 0.92480 0.92783 0.88533 0.87511 0.76691 0.92806 0.92838 0.97459 0.89605 0.95495 0.95474 0.89603 0.97497 0.93020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 8.46 37.16 0.31 -0.84 16 2 C -0.04 -0.38 0.88 -154.51 -0.14 -0.51 16 3 C -0.15 -1.18 7.07 37.15 0.26 -0.91 16 4 C -0.14 -1.35 8.31 37.16 0.31 -1.04 16 5 C -0.11 -1.29 4.66 -90.62 -0.42 -1.71 16 6 H 0.12 1.60 7.64 -51.93 -0.40 1.20 16 7 C -0.15 -1.74 9.27 -26.71 -0.25 -1.99 16 8 C -0.18 -2.42 5.04 -91.76 -0.46 -2.88 16 9 H 0.12 1.36 7.07 -51.93 -0.37 0.99 16 10 C 0.53 9.48 7.61 -10.99 -0.08 9.40 16 11 O -0.56 -11.91 16.26 5.56 0.09 -11.82 16 12 N -0.71 -13.03 4.96 -60.29 -0.30 -13.33 16 13 C 0.13 2.87 4.50 -4.04 -0.02 2.85 16 14 C 0.06 1.31 0.50 -155.66 -0.08 1.23 16 15 C -0.13 -2.97 8.08 37.16 0.30 -2.67 16 16 C -0.13 -2.96 8.08 37.15 0.30 -2.66 16 17 C -0.51 -13.39 8.01 -34.44 -0.28 -13.66 16 18 H 0.06 1.53 7.74 -52.48 -0.41 1.13 16 19 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 20 N -0.89 -23.72 9.35 55.43 0.52 -23.20 16 21 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.47 7.08 -51.93 -0.37 0.10 16 30 H 0.06 0.45 6.98 -51.93 -0.36 0.09 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.57 7.28 -51.93 -0.38 0.19 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.11 0.97 5.85 -51.93 -0.30 0.66 16 36 H 0.40 6.59 6.16 -40.82 -0.25 6.33 16 37 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.01 0.13 6.86 -51.93 -0.36 -0.23 16 40 H 0.09 2.15 6.07 -51.93 -0.32 1.84 16 41 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.09 2.15 6.07 -51.93 -0.32 1.84 16 44 H 0.01 0.12 6.86 -51.93 -0.36 -0.23 16 45 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 LS Contribution 346.59 15.07 5.22 5.22 Total: -1.00 -28.41 346.59 -7.78 -36.19 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -7.96 Total: 4.87 kcal Atomic # 6 Polarization: -13.42 SS G_CDS: -0.33 Total: -13.75 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: 0.22 Total: -36.53 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: 0.09 Total: -11.82 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -28.41 -7.78 -36.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699781160.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.850 kcal (2) G-P(sol) polarization free energy of solvation -28.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds