Wall clock time and date at job start Mon Mar 30 2020 07:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 6 6 H 1.09004 * 115.54939 * 325.72895 * 5 2 1 7 7 C 1.53008 * 117.49935 * 111.38925 * 5 2 1 8 8 C 1.52995 * 117.50420 * 180.02562 * 5 2 1 9 9 H 1.09005 * 117.49674 * 0.02562 * 8 5 2 10 10 C 1.50694 * 117.50371 * 145.02313 * 8 5 2 11 11 O 1.21281 * 119.99776 * 0.02562 * 10 8 5 12 12 N 1.34776 * 120.00611 * 180.02562 * 10 8 5 13 13 C 1.46497 * 120.00351 * 180.02562 * 12 10 8 14 14 C 1.53004 * 109.46950 * 180.02562 * 13 12 10 15 15 C 1.53003 * 109.46886 * 299.99389 * 14 13 12 16 16 C 1.52993 * 109.47318 * 59.99836 * 14 13 12 17 17 C 1.50706 * 109.46898 * 179.97438 * 14 13 12 18 18 H 1.08004 * 119.99917 * 359.97438 * 17 14 13 19 19 C 1.37875 * 120.00176 * 179.97438 * 17 14 13 20 20 N 1.31519 * 119.99737 * 0.02562 * 19 17 14 21 21 Si 1.86793 * 120.00336 * 179.97438 * 19 17 14 22 22 H 1.48500 * 109.47210 * 90.00310 * 21 19 17 23 23 H 1.48495 * 109.47485 * 210.00382 * 21 19 17 24 24 H 1.48502 * 109.47328 * 330.00348 * 21 19 17 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 29 29 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 31 31 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 32 32 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 33 33 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 34 34 H 1.08999 * 117.49784 * 214.98701 * 7 5 2 35 35 H 1.08999 * 117.49317 * 0.02562 * 7 5 2 36 36 H 0.97003 * 119.99686 * 0.02562 * 12 10 8 37 37 H 1.09004 * 109.47175 * 299.99315 * 13 12 10 38 38 H 1.09003 * 109.47477 * 59.99936 * 13 12 10 39 39 H 1.08999 * 109.46537 * 60.00602 * 15 14 13 40 40 H 1.09000 * 109.46736 * 180.02562 * 15 14 13 41 41 H 1.08999 * 109.47518 * 300.00610 * 15 14 13 42 42 H 1.08996 * 109.47219 * 60.00248 * 16 14 13 43 43 H 1.09000 * 109.47171 * 179.97438 * 16 14 13 44 44 H 1.09001 * 109.46950 * 300.00047 * 16 14 13 45 45 H 0.97003 * 120.00033 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 2.0400 -0.7213 -1.2492 6 1 1.4305 -1.5580 -1.5908 7 6 2.7422 0.1226 -2.3150 8 6 3.5550 -0.8287 -1.4340 9 1 4.1884 -0.3858 -0.6653 10 6 4.0907 -2.0832 -2.0743 11 8 3.3281 -2.9599 -2.4217 12 7 5.4173 -2.2310 -2.2610 13 6 5.9380 -3.4504 -2.8840 14 6 7.4628 -3.3645 -2.9767 15 6 7.8547 -2.1519 -3.8235 16 6 8.0518 -3.2178 -1.5724 17 6 7.9985 -4.6192 -3.6171 18 1 7.3194 -5.3999 -3.9265 19 6 9.3556 -4.7704 -3.8079 20 7 10.1826 -3.8199 -3.4307 21 14 10.0197 -6.3258 -4.6009 22 1 10.0847 -6.1420 -6.0730 23 1 11.3803 -6.6067 -4.0766 24 1 9.1220 -7.4654 -4.2836 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.6768 1.9562 0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 -1.7489 1.2492 32 1 3.1300 -0.7217 1.2490 33 1 1.6767 -0.2075 2.1393 34 1 2.5950 -0.1592 -3.3576 35 1 2.8411 1.1915 -2.1259 36 1 6.0273 -1.5300 -1.9828 37 1 5.6592 -4.3143 -2.2805 38 1 5.5181 -3.5552 -3.8844 39 1 7.4673 -1.2447 -3.3599 40 1 8.9410 -2.0910 -3.8899 41 1 7.4351 -2.2564 -4.8240 42 1 7.7726 -4.0817 -0.9692 43 1 9.1381 -3.1571 -1.6384 44 1 7.6643 -2.3105 -1.1089 45 1 11.1375 -3.9265 -3.5646 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699781160.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:02 Heat of formation + Delta-G solvation = -55.981338 kcal Electronic energy + Delta-G solvation = -21023.110097 eV Core-core repulsion = 18039.811979 eV Total energy + Delta-G solvation = -2983.298118 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.24999 -39.41389 -38.00156 -34.98900 -34.72512 -32.69597 -28.29917 -28.08902 -27.69536 -27.57975 -27.13116 -24.50420 -23.75509 -21.20062 -20.60393 -19.26302 -18.55527 -17.73657 -16.87023 -16.60892 -16.41593 -15.97637 -15.35753 -14.88828 -14.81581 -14.58601 -14.53073 -14.04402 -13.75152 -13.45796 -13.22036 -13.12528 -13.09724 -12.69995 -12.61887 -12.55946 -12.44455 -12.27067 -12.14675 -12.05060 -11.92033 -11.50457 -11.45998 -11.32094 -11.14606 -10.90216 -10.78761 -10.65954 -10.41143 -9.94929 -8.03731 -6.19710 1.41488 1.44227 1.52609 1.56024 2.27920 2.48195 2.89594 3.19678 3.64309 3.78608 3.87494 4.02552 4.19568 4.29106 4.34364 4.42664 4.48664 4.63421 4.69191 4.78292 4.85015 4.85832 4.96786 4.97798 5.01729 5.04257 5.11235 5.11699 5.15157 5.17604 5.22360 5.26000 5.35851 5.41815 5.52767 5.57292 5.59910 5.65556 5.65666 6.13435 6.19869 6.42006 6.68542 6.84189 7.33136 7.48040 8.95214 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.042083 B = 0.003580 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.197202 B = 7820.328799 C = 7936.704894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.037 4.037 3 C -0.145 4.145 4 C -0.142 4.142 5 C -0.108 4.108 6 H 0.089 0.911 7 C -0.138 4.138 8 C -0.190 4.190 9 H 0.144 0.856 10 C 0.529 3.471 11 O -0.598 6.598 12 N -0.706 5.706 13 C 0.148 3.852 14 C 0.052 3.948 15 C -0.120 4.120 16 C -0.120 4.120 17 C -0.531 4.531 18 H 0.043 0.957 19 C 0.029 3.971 20 N -0.899 5.899 21 Si 0.946 3.054 22 H -0.278 1.278 23 H -0.281 1.281 24 H -0.277 1.277 25 H 0.060 0.940 26 H 0.069 0.931 27 H 0.046 0.954 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.041 0.959 32 H 0.052 0.948 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.138 0.862 36 H 0.409 0.591 37 H 0.035 0.965 38 H 0.035 0.965 39 H 0.037 0.963 40 H 0.063 0.937 41 H 0.017 0.983 42 H 0.016 0.984 43 H 0.063 0.937 44 H 0.037 0.963 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.611 13.174 7.887 20.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.037 4.037 3 C -0.202 4.202 4 C -0.199 4.199 5 C -0.126 4.126 6 H 0.107 0.893 7 C -0.175 4.175 8 C -0.211 4.211 9 H 0.161 0.839 10 C 0.317 3.683 11 O -0.480 6.480 12 N -0.357 5.357 13 C 0.024 3.976 14 C 0.051 3.949 15 C -0.178 4.178 16 C -0.178 4.178 17 C -0.570 4.570 18 H 0.061 0.939 19 C -0.171 4.171 20 N -0.537 5.537 21 Si 0.772 3.228 22 H -0.204 1.204 23 H -0.207 1.207 24 H -0.202 1.202 25 H 0.079 0.921 26 H 0.088 0.912 27 H 0.065 0.935 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.103 0.897 35 H 0.156 0.844 36 H 0.247 0.753 37 H 0.053 0.947 38 H 0.054 0.946 39 H 0.056 0.944 40 H 0.082 0.918 41 H 0.036 0.964 42 H 0.036 0.964 43 H 0.082 0.918 44 H 0.056 0.944 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.912 12.582 7.644 20.256 hybrid contribution 0.959 -1.228 -0.593 1.667 sum -12.953 11.354 7.051 18.612 Atomic orbital electron populations 1.21828 0.93443 1.01644 1.02529 1.20114 0.96118 0.95480 0.91946 1.22024 1.01344 0.94069 1.02784 1.21875 1.01048 0.99852 0.97135 1.22443 0.90986 1.01008 0.98206 0.89310 1.23306 0.99955 0.98415 0.95803 1.22266 0.96929 0.96625 1.05300 0.83864 1.20431 0.81989 0.88072 0.77811 1.90629 1.58347 1.45112 1.53866 1.46080 1.07075 1.21319 1.61216 1.21262 0.95809 0.85439 0.95113 1.18354 0.88049 0.94698 0.93806 1.21663 1.02727 0.95992 0.97375 1.21662 1.02887 0.97281 0.95938 1.21279 0.92343 1.03064 1.40293 0.93906 1.25451 0.97080 0.98787 0.95792 1.69905 1.02984 1.33393 1.47426 0.85753 0.77608 0.80674 0.78741 1.20433 1.20676 1.20167 0.92103 0.91171 0.93531 0.91432 0.92176 0.91353 0.93970 0.92862 0.91097 0.89744 0.84371 0.75346 0.94674 0.94624 0.94363 0.91788 0.96427 0.96433 0.91785 0.94382 0.92963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 8.46 71.98 0.61 -1.41 16 2 C -0.04 -0.60 0.88 -52.18 -0.05 -0.64 16 3 C -0.15 -1.78 7.07 71.98 0.51 -1.27 16 4 C -0.14 -2.45 8.31 71.98 0.60 -1.85 16 5 C -0.11 -2.39 4.66 -10.79 -0.05 -2.44 16 6 H 0.09 2.49 7.64 -2.38 -0.02 2.47 16 7 C -0.14 -2.77 9.27 30.61 0.28 -2.48 16 8 C -0.19 -4.64 5.04 -11.53 -0.06 -4.70 16 9 H 0.14 2.80 7.07 -2.38 -0.02 2.79 16 10 C 0.53 18.60 7.61 87.66 0.67 19.27 16 11 O -0.60 -26.20 16.26 -3.03 -0.05 -26.25 16 12 N -0.71 -25.23 4.96 -463.06 -2.30 -27.53 16 13 C 0.15 6.51 4.50 86.38 0.39 6.90 16 14 C 0.05 2.42 0.50 -52.93 -0.03 2.40 16 15 C -0.12 -5.37 8.08 71.98 0.58 -4.79 16 16 C -0.12 -5.38 8.08 71.98 0.58 -4.80 16 17 C -0.53 -28.57 8.01 25.60 0.21 -28.37 16 18 H 0.04 2.36 7.74 -2.91 -0.02 2.34 16 19 C 0.03 1.53 5.15 84.65 0.44 1.96 16 20 N -0.90 -48.11 9.35 21.45 0.20 -47.90 16 21 Si 0.95 42.95 29.54 68.60 2.03 44.97 16 22 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 23 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 24 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 25 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 28 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.06 0.72 7.08 -2.39 -0.02 0.71 16 30 H 0.07 0.74 6.98 -2.39 -0.02 0.72 16 31 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.05 0.95 7.28 -2.39 -0.02 0.93 16 33 H 0.07 0.97 8.14 -2.39 -0.02 0.96 16 34 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.14 1.93 5.85 -2.39 -0.01 1.92 16 36 H 0.41 12.64 6.16 -92.71 -0.57 12.07 16 37 H 0.03 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.04 1.43 6.86 -2.39 -0.02 1.41 16 40 H 0.06 3.18 6.07 -2.39 -0.01 3.16 16 41 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.06 3.18 6.07 -2.39 -0.01 3.17 16 44 H 0.04 1.42 6.86 -2.39 -0.02 1.40 16 45 H 0.26 13.42 8.31 -92.71 -0.77 12.65 16 Total: -1.00 -61.99 346.59 4.94 -57.04 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: 0.38 Total: 21.90 kcal Atomic # 6 Polarization: -26.91 SS G_CDS: 4.68 Total: -22.23 kcal Atomic # 7 Polarization: -73.34 SS G_CDS: -2.10 Total: -75.43 kcal Atomic # 8 Polarization: -26.20 SS G_CDS: -0.05 Total: -26.25 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.97 kcal Total: -61.99 4.94 -57.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699781160.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.063 kcal (2) G-P(sol) polarization free energy of solvation -61.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds