Wall clock time and date at job start Mon Mar 30 2020 06:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47291 * 2 1 4 4 C 1.53008 * 109.46894 * 240.00213 * 2 1 3 5 5 O 1.42906 * 109.50019 * 299.99907 * 4 2 1 6 6 C 1.53111 * 109.50209 * 60.07822 * 4 2 1 7 7 C 1.53123 * 109.15831 * 177.55688 * 6 4 2 8 8 C 1.53035 * 109.30899 * 302.40392 * 7 6 4 9 9 N 1.46848 * 109.52397 * 59.15799 * 8 7 6 10 10 C 1.46902 * 111.00286 * 174.15655 * 9 8 7 11 11 C 1.52992 * 109.47258 * 319.69595 * 10 9 8 12 12 C 1.50705 * 115.54808 * 282.63754 * 11 10 9 13 13 H 1.07998 * 119.99966 * 120.03131 * 12 11 10 14 14 C 1.37872 * 119.99878 * 300.02762 * 12 11 10 15 15 N 1.31523 * 119.99997 * 159.57548 * 14 12 11 16 16 Si 1.86798 * 120.00158 * 339.56963 * 14 12 11 17 17 H 1.48503 * 109.46885 * 84.72488 * 16 14 12 18 18 H 1.48500 * 109.47431 * 204.72324 * 16 14 12 19 19 H 1.48492 * 109.47325 * 324.72788 * 16 14 12 20 20 C 1.53002 * 117.50260 * 136.92920 * 11 10 9 21 21 C 1.52995 * 60.00089 * 252.50731 * 20 11 10 22 22 C 1.46846 * 111.19889 * 298.26162 * 9 8 7 23 23 H 1.08997 * 109.47366 * 59.99630 * 1 2 3 24 24 H 1.09002 * 109.47173 * 299.99870 * 1 2 3 25 25 H 1.09003 * 109.47373 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47366 * 120.00370 * 2 1 3 27 27 H 1.09002 * 109.46744 * 60.00495 * 3 2 1 28 28 H 1.09002 * 109.47118 * 180.02562 * 3 2 1 29 29 H 1.08997 * 109.47217 * 300.00461 * 3 2 1 30 30 H 0.96698 * 113.99005 * 175.31016 * 5 4 2 31 31 H 1.09000 * 109.52761 * 297.50191 * 6 4 2 32 32 H 1.09004 * 109.52290 * 57.69318 * 6 4 2 33 33 H 1.09005 * 109.50674 * 182.44603 * 7 6 4 34 34 H 1.09000 * 109.47283 * 62.34481 * 7 6 4 35 35 H 1.08998 * 109.47035 * 299.14214 * 8 7 6 36 36 H 1.09003 * 109.45510 * 179.16706 * 8 7 6 37 37 H 1.09008 * 109.46731 * 79.69242 * 10 9 8 38 38 H 1.08996 * 109.47130 * 199.69146 * 10 9 8 39 39 H 0.96997 * 119.99698 * 184.99682 * 15 14 12 40 40 H 1.09000 * 117.49679 * 0.02562 * 20 11 10 41 41 H 1.09000 * 117.50193 * 145.01336 * 20 11 10 42 42 H 1.08997 * 117.50195 * 252.50406 * 21 20 11 43 43 H 1.09001 * 117.49717 * 107.48647 * 21 20 11 44 44 H 1.09000 * 109.45907 * 301.71872 * 22 9 8 45 45 H 1.08999 * 109.46594 * 181.75922 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 1.5639 -2.0687 -1.2500 6 6 1.5316 0.0012 -2.4999 7 6 2.0960 -0.6903 -3.7441 8 6 3.6247 -0.6899 -3.6736 9 7 4.0602 -1.3936 -2.4605 10 6 5.5222 -1.5339 -2.4294 11 6 6.0319 -1.8738 -3.8313 12 6 5.8396 -3.3046 -4.2636 13 1 5.2484 -3.5294 -5.1391 14 6 6.4184 -4.3266 -3.5416 15 7 5.9527 -5.5521 -3.6471 16 14 7.8642 -3.9709 -2.4135 17 1 7.3611 -3.5079 -1.0952 18 1 8.6657 -5.2076 -2.2309 19 1 8.7150 -2.9142 -3.0174 20 6 7.2876 -1.1499 -4.3213 21 6 5.9202 -0.7901 -4.9056 22 6 3.5703 -0.7200 -1.2511 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8934 -0.5139 0.8899 27 1 1.6768 1.9563 0.8901 28 1 3.1301 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.7892 -2.5648 -2.0488 31 1 0.4425 -0.0357 -2.5245 32 1 1.8615 1.0399 -2.4800 33 1 1.7728 -0.1544 -4.6366 34 1 1.7338 -1.7176 -3.7846 35 1 3.9869 0.3378 -3.6470 36 1 4.0288 -1.1948 -4.5511 37 1 5.9701 -0.5973 -2.0971 38 1 5.7959 -2.3324 -1.7397 39 1 6.3115 -6.2572 -3.0860 40 1 7.7509 -0.4319 -3.6446 41 1 7.9752 -1.7087 -4.9563 42 1 5.7080 -1.1120 -5.9251 43 1 5.4836 0.1650 -4.6135 44 1 3.9327 0.3078 -1.2358 45 1 3.9349 -1.2465 -0.3691 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710230789.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:23 Heat of formation + Delta-G solvation = -18.696109 kcal Electronic energy + Delta-G solvation = -22512.626259 eV Core-core repulsion = 19530.944950 eV Total energy + Delta-G solvation = -2981.681309 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.02953 -37.69538 -34.81371 -34.16558 -32.10760 -32.07416 -28.84349 -27.22299 -26.79673 -25.18039 -23.52589 -22.70627 -21.53111 -20.17200 -19.03204 -18.51333 -16.76287 -16.12577 -15.49129 -15.03186 -14.88945 -14.48645 -14.35298 -13.73372 -13.50616 -13.38449 -12.98340 -12.86443 -12.66608 -12.28041 -12.25920 -12.14196 -11.66828 -11.63727 -11.20249 -11.04196 -10.98959 -10.93713 -10.61814 -10.56261 -10.48251 -10.28634 -10.09106 -9.74787 -9.48817 -9.23037 -9.06672 -8.52141 -8.28718 -7.54098 -6.06861 -3.99039 3.30110 3.41026 3.48041 4.28612 4.44324 4.46574 4.79784 4.88981 5.03889 5.16999 5.19429 5.24406 5.28451 5.39956 5.51128 5.62683 5.65486 5.77049 5.78049 5.84110 5.87423 5.90084 5.96655 6.03675 6.07499 6.11775 6.16478 6.18236 6.23261 6.29617 6.37064 6.42310 6.46331 6.54415 6.61894 6.70508 6.87803 7.10697 7.14447 7.73250 7.80441 7.86913 8.17413 8.54591 8.97528 9.59099 11.03386 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.024010 B = 0.006291 C = 0.005976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.880793 B = 4449.942159 C = 4684.101683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.082 4.082 3 C -0.150 4.150 4 C 0.149 3.851 5 O -0.557 6.557 6 C -0.149 4.149 7 C -0.124 4.124 8 C 0.045 3.955 9 N -0.515 5.515 10 C 0.094 3.906 11 C 0.009 3.991 12 C -0.480 4.480 13 H 0.074 0.926 14 C 0.088 3.912 15 N -0.885 5.885 16 Si 0.863 3.137 17 H -0.277 1.277 18 H -0.293 1.293 19 H -0.257 1.257 20 C -0.204 4.204 21 C -0.190 4.190 22 C 0.028 3.972 23 H 0.053 0.947 24 H 0.048 0.952 25 H 0.063 0.937 26 H 0.074 0.926 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.387 0.613 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.020 0.980 36 H 0.111 0.889 37 H 0.008 0.992 38 H 0.074 0.926 39 H 0.264 0.736 40 H 0.064 0.936 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.075 0.925 44 H 0.033 0.967 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.606 13.122 4.690 15.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.101 4.101 3 C -0.208 4.208 4 C 0.107 3.893 5 O -0.365 6.365 6 C -0.186 4.186 7 C -0.162 4.162 8 C -0.082 4.082 9 N -0.239 5.239 10 C -0.034 4.034 11 C 0.007 3.993 12 C -0.517 4.517 13 H 0.092 0.908 14 C -0.116 4.116 15 N -0.521 5.521 16 Si 0.691 3.309 17 H -0.203 1.203 18 H -0.220 1.220 19 H -0.182 1.182 20 C -0.242 4.242 21 C -0.227 4.227 22 C -0.101 4.101 23 H 0.072 0.928 24 H 0.067 0.933 25 H 0.083 0.917 26 H 0.092 0.908 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.238 0.762 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.038 0.962 36 H 0.128 0.872 37 H 0.026 0.974 38 H 0.093 0.907 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.104 0.896 42 H 0.103 0.897 43 H 0.093 0.907 44 H 0.051 0.949 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.970 12.594 5.261 15.806 hybrid contribution 1.515 0.800 0.190 1.724 sum -6.454 13.394 5.451 15.836 Atomic orbital electron populations 1.21779 0.94770 1.02401 1.00914 1.21002 0.96418 0.95290 0.97384 1.21977 1.01336 0.95629 1.01810 1.21006 0.91334 0.83188 0.93737 1.86335 1.79785 1.23488 1.46923 1.22384 1.00852 0.99829 0.95572 1.21698 0.96334 1.01250 0.96893 1.22692 0.93971 0.95615 0.95915 1.61689 1.12168 1.49524 1.00536 1.21928 0.85475 0.97599 0.98355 1.19454 0.95925 0.93827 0.90057 1.20029 1.32023 0.85960 1.13708 0.90824 1.24829 0.96357 0.94697 0.95715 1.69952 1.40927 1.01854 1.39336 0.87111 0.84467 0.77979 0.81388 1.20305 1.21981 1.18153 1.23236 0.91834 1.04256 1.04858 1.23027 1.00921 0.99388 0.99395 1.22851 0.95675 0.96779 0.94789 0.92776 0.93330 0.91747 0.90754 0.92525 0.92353 0.92308 0.76196 0.91331 0.91597 0.91793 0.91012 0.96242 0.87156 0.97425 0.90733 0.92592 0.91744 0.89609 0.89660 0.90695 0.94941 0.90829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 8.70 37.16 0.32 -1.26 16 2 C -0.08 -1.01 2.50 -90.61 -0.23 -1.24 16 3 C -0.15 -1.57 8.49 37.16 0.32 -1.26 16 4 C 0.15 2.14 0.57 -90.54 -0.05 2.09 16 5 O -0.56 -9.21 12.30 -35.23 -0.43 -9.65 16 6 C -0.15 -1.93 4.29 -26.61 -0.11 -2.05 16 7 C -0.12 -1.78 5.78 -26.65 -0.15 -1.93 16 8 C 0.05 0.77 3.88 -3.83 -0.01 0.76 16 9 N -0.52 -9.77 4.38 -234.68 -1.03 -10.80 16 10 C 0.09 1.99 4.97 -3.83 -0.02 1.97 16 11 C 0.01 0.19 0.26 -155.66 -0.04 0.15 16 12 C -0.48 -12.98 9.31 -34.44 -0.32 -13.30 16 13 H 0.07 2.18 8.06 -52.49 -0.42 1.75 16 14 C 0.09 2.46 5.33 -17.82 -0.09 2.37 16 15 N -0.88 -26.45 13.95 55.43 0.77 -25.67 16 16 Si 0.86 21.24 25.61 -169.99 -4.35 16.89 16 17 H -0.28 -6.69 6.57 56.52 0.37 -6.32 16 18 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 19 H -0.26 -6.07 6.25 56.52 0.35 -5.72 16 20 C -0.20 -4.24 8.17 -26.73 -0.22 -4.46 16 21 C -0.19 -3.70 7.07 -26.73 -0.19 -3.89 16 22 C 0.03 0.45 4.02 -3.84 -0.02 0.44 16 23 H 0.05 0.57 6.49 -51.93 -0.34 0.23 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.80 7.68 -51.93 -0.40 0.40 16 26 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.63 6.41 -51.93 -0.33 0.30 16 29 H 0.06 0.59 6.38 -51.93 -0.33 0.26 16 30 H 0.39 6.53 6.88 45.56 0.31 6.84 16 31 H 0.07 0.84 6.58 -51.93 -0.34 0.50 16 32 H 0.07 0.80 6.32 -51.93 -0.33 0.48 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 1.09 6.81 -51.93 -0.35 0.74 16 35 H 0.02 0.32 6.87 -51.93 -0.36 -0.04 16 36 H 0.11 2.12 4.75 -51.93 -0.25 1.87 16 37 H 0.01 0.15 7.84 -51.92 -0.41 -0.26 16 38 H 0.07 1.76 5.49 -51.93 -0.29 1.47 16 39 H 0.26 7.48 8.32 -40.82 -0.34 7.14 16 40 H 0.06 1.24 8.11 -51.93 -0.42 0.82 16 41 H 0.09 1.85 8.14 -51.93 -0.42 1.43 16 42 H 0.08 1.66 8.14 -51.93 -0.42 1.23 16 43 H 0.07 1.31 5.98 -51.93 -0.31 1.00 16 44 H 0.03 0.50 6.38 -51.93 -0.33 0.17 16 45 H 0.07 1.27 8.12 -51.93 -0.42 0.85 16 LS Contribution 321.79 15.07 4.85 4.85 Total: -1.00 -28.57 321.79 -8.07 -36.64 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: -7.06 Total: 9.34 kcal Atomic # 6 Polarization: -20.78 SS G_CDS: -0.82 Total: -21.60 kcal Atomic # 7 Polarization: -36.22 SS G_CDS: -0.25 Total: -36.47 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: -0.43 Total: -9.65 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.35 Total: 16.89 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.57 -8.07 -36.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710230789.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.948 kcal (2) G-P(sol) polarization free energy of solvation -28.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds