Wall clock time and date at job start Mon Mar 30 2020 06:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47291 * 2 1 4 4 C 1.53008 * 109.46894 * 240.00213 * 2 1 3 5 5 O 1.42906 * 109.50019 * 299.99907 * 4 2 1 6 6 C 1.53111 * 109.50209 * 60.07822 * 4 2 1 7 7 C 1.53123 * 109.15831 * 177.55688 * 6 4 2 8 8 C 1.53035 * 109.30899 * 302.40392 * 7 6 4 9 9 N 1.46848 * 109.52397 * 59.15799 * 8 7 6 10 10 C 1.46902 * 111.00286 * 174.15655 * 9 8 7 11 11 C 1.52992 * 109.47258 * 319.69595 * 10 9 8 12 12 C 1.50705 * 115.54808 * 282.63754 * 11 10 9 13 13 H 1.07998 * 119.99966 * 120.03131 * 12 11 10 14 14 C 1.37872 * 119.99878 * 300.02762 * 12 11 10 15 15 N 1.31523 * 119.99997 * 159.57548 * 14 12 11 16 16 Si 1.86798 * 120.00158 * 339.56963 * 14 12 11 17 17 H 1.48503 * 109.46885 * 84.72488 * 16 14 12 18 18 H 1.48500 * 109.47431 * 204.72324 * 16 14 12 19 19 H 1.48492 * 109.47325 * 324.72788 * 16 14 12 20 20 C 1.53002 * 117.50260 * 136.92920 * 11 10 9 21 21 C 1.52995 * 60.00089 * 252.50731 * 20 11 10 22 22 C 1.46846 * 111.19889 * 298.26162 * 9 8 7 23 23 H 1.08997 * 109.47366 * 59.99630 * 1 2 3 24 24 H 1.09002 * 109.47173 * 299.99870 * 1 2 3 25 25 H 1.09003 * 109.47373 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47366 * 120.00370 * 2 1 3 27 27 H 1.09002 * 109.46744 * 60.00495 * 3 2 1 28 28 H 1.09002 * 109.47118 * 180.02562 * 3 2 1 29 29 H 1.08997 * 109.47217 * 300.00461 * 3 2 1 30 30 H 0.96698 * 113.99005 * 175.31016 * 5 4 2 31 31 H 1.09000 * 109.52761 * 297.50191 * 6 4 2 32 32 H 1.09004 * 109.52290 * 57.69318 * 6 4 2 33 33 H 1.09005 * 109.50674 * 182.44603 * 7 6 4 34 34 H 1.09000 * 109.47283 * 62.34481 * 7 6 4 35 35 H 1.08998 * 109.47035 * 299.14214 * 8 7 6 36 36 H 1.09003 * 109.45510 * 179.16706 * 8 7 6 37 37 H 1.09008 * 109.46731 * 79.69242 * 10 9 8 38 38 H 1.08996 * 109.47130 * 199.69146 * 10 9 8 39 39 H 0.96997 * 119.99698 * 184.99682 * 15 14 12 40 40 H 1.09000 * 117.49679 * 0.02562 * 20 11 10 41 41 H 1.09000 * 117.50193 * 145.01336 * 20 11 10 42 42 H 1.08997 * 117.50195 * 252.50406 * 21 20 11 43 43 H 1.09001 * 117.49717 * 107.48647 * 21 20 11 44 44 H 1.09000 * 109.45907 * 301.71872 * 22 9 8 45 45 H 1.08999 * 109.46594 * 181.75922 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 1.5639 -2.0687 -1.2500 6 6 1.5316 0.0012 -2.4999 7 6 2.0960 -0.6903 -3.7441 8 6 3.6247 -0.6899 -3.6736 9 7 4.0602 -1.3936 -2.4605 10 6 5.5222 -1.5339 -2.4294 11 6 6.0319 -1.8738 -3.8313 12 6 5.8396 -3.3046 -4.2636 13 1 5.2484 -3.5294 -5.1391 14 6 6.4184 -4.3266 -3.5416 15 7 5.9527 -5.5521 -3.6471 16 14 7.8642 -3.9709 -2.4135 17 1 7.3611 -3.5079 -1.0952 18 1 8.6657 -5.2076 -2.2309 19 1 8.7150 -2.9142 -3.0174 20 6 7.2876 -1.1499 -4.3213 21 6 5.9202 -0.7901 -4.9056 22 6 3.5703 -0.7200 -1.2511 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8934 -0.5139 0.8899 27 1 1.6768 1.9563 0.8901 28 1 3.1301 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.7892 -2.5648 -2.0488 31 1 0.4425 -0.0357 -2.5245 32 1 1.8615 1.0399 -2.4800 33 1 1.7728 -0.1544 -4.6366 34 1 1.7338 -1.7176 -3.7846 35 1 3.9869 0.3378 -3.6470 36 1 4.0288 -1.1948 -4.5511 37 1 5.9701 -0.5973 -2.0971 38 1 5.7959 -2.3324 -1.7397 39 1 6.3115 -6.2572 -3.0860 40 1 7.7509 -0.4319 -3.6446 41 1 7.9752 -1.7087 -4.9563 42 1 5.7080 -1.1120 -5.9251 43 1 5.4836 0.1650 -4.6135 44 1 3.9327 0.3078 -1.2358 45 1 3.9349 -1.2465 -0.3691 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710230789.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:22 Heat of formation + Delta-G solvation = -38.356842 kcal Electronic energy + Delta-G solvation = -22513.478812 eV Core-core repulsion = 19530.944950 eV Total energy + Delta-G solvation = -2982.533863 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.29324 -39.21010 -36.18867 -35.31306 -34.21662 -33.34707 -30.03902 -28.64741 -27.91795 -27.00467 -24.77720 -24.00583 -23.01922 -21.44261 -20.84842 -19.65744 -18.38766 -17.67165 -16.90603 -16.71368 -16.12301 -15.71041 -15.63545 -15.34527 -14.95011 -14.77059 -14.52412 -14.21995 -13.92416 -13.73457 -13.51248 -13.15848 -13.03130 -12.97180 -12.77707 -12.42393 -12.36901 -12.14617 -12.06474 -11.98168 -11.88573 -11.62023 -11.51099 -11.36900 -10.99883 -10.82822 -10.51594 -10.32755 -10.16930 -8.96081 -8.24081 -6.18267 1.33293 1.39341 1.50543 2.40023 2.80564 3.09579 3.33980 3.48962 3.73869 3.89912 4.00808 4.05237 4.15009 4.23776 4.31720 4.37760 4.43214 4.48215 4.55767 4.58466 4.67857 4.69292 4.75913 4.85094 4.85907 4.88681 4.95831 5.04216 5.05613 5.08518 5.11206 5.17203 5.25045 5.34360 5.39396 5.46497 5.49454 5.54185 5.56449 5.79883 6.27056 6.38744 6.45139 6.80365 6.88281 7.42444 8.90056 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.024010 B = 0.006291 C = 0.005976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.880793 B = 4449.942159 C = 4684.101683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.082 4.082 3 C -0.146 4.146 4 C 0.144 3.856 5 O -0.572 6.572 6 C -0.139 4.139 7 C -0.121 4.121 8 C 0.049 3.951 9 N -0.537 5.537 10 C 0.101 3.899 11 C -0.019 4.019 12 C -0.473 4.473 13 H 0.030 0.970 14 C 0.033 3.967 15 N -0.937 5.937 16 Si 0.921 3.079 17 H -0.271 1.271 18 H -0.299 1.299 19 H -0.236 1.236 20 C -0.199 4.199 21 C -0.162 4.162 22 C 0.030 3.970 23 H 0.064 0.936 24 H 0.065 0.935 25 H 0.045 0.955 26 H 0.061 0.939 27 H 0.072 0.928 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.381 0.619 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.054 0.946 35 H 0.036 0.964 36 H 0.084 0.916 37 H 0.028 0.972 38 H 0.044 0.956 39 H 0.263 0.737 40 H 0.089 0.911 41 H 0.074 0.926 42 H 0.080 0.920 43 H 0.104 0.896 44 H 0.051 0.949 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.761 16.749 5.406 19.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.101 4.101 3 C -0.203 4.203 4 C 0.103 3.897 5 O -0.380 6.380 6 C -0.176 4.176 7 C -0.159 4.159 8 C -0.078 4.078 9 N -0.262 5.262 10 C -0.027 4.027 11 C -0.020 4.020 12 C -0.511 4.511 13 H 0.048 0.952 14 C -0.166 4.166 15 N -0.576 5.576 16 Si 0.746 3.254 17 H -0.196 1.196 18 H -0.226 1.226 19 H -0.159 1.159 20 C -0.237 4.237 21 C -0.199 4.199 22 C -0.098 4.098 23 H 0.083 0.917 24 H 0.084 0.916 25 H 0.064 0.936 26 H 0.079 0.921 27 H 0.091 0.909 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.231 0.769 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.073 0.927 35 H 0.054 0.946 36 H 0.102 0.898 37 H 0.046 0.954 38 H 0.062 0.938 39 H 0.072 0.928 40 H 0.108 0.892 41 H 0.093 0.907 42 H 0.099 0.901 43 H 0.122 0.878 44 H 0.069 0.931 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.125 16.258 5.973 19.132 hybrid contribution 1.482 -0.337 -0.093 1.522 sum -6.643 15.921 5.880 18.226 Atomic orbital electron populations 1.21746 0.93779 1.01619 1.02319 1.21041 0.97239 0.96238 0.95599 1.21950 1.01008 0.94114 1.03202 1.21248 0.90115 0.82518 0.95790 1.86341 1.79952 1.24931 1.46745 1.22317 1.01456 1.00209 0.93654 1.21673 0.94467 1.00950 0.98771 1.22607 0.95655 0.95624 0.93926 1.61599 1.10963 1.51360 1.02270 1.21682 0.87160 0.97383 0.96451 1.19303 0.98615 0.92062 0.92012 1.20188 1.30203 0.88863 1.11823 0.95208 1.25582 0.98735 0.94408 0.97851 1.70092 1.43030 1.03092 1.41391 0.86178 0.81325 0.77996 0.79871 1.19645 1.22589 1.15906 1.23253 0.91705 1.03932 1.04781 1.23027 0.99517 0.99167 0.98143 1.22883 0.97009 0.97056 0.92857 0.91723 0.91576 0.93627 0.92098 0.90855 0.92808 0.91247 0.76892 0.90111 0.89726 0.89563 0.92721 0.94600 0.89809 0.95354 0.93814 0.92820 0.89217 0.90736 0.90150 0.87776 0.93132 0.92673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 8.70 71.98 0.63 -2.11 16 2 C -0.08 -1.84 2.50 -10.79 -0.03 -1.87 16 3 C -0.15 -2.51 8.49 71.98 0.61 -1.90 16 4 C 0.14 3.91 0.57 -10.74 -0.01 3.90 16 5 O -0.57 -18.97 12.30 -148.98 -1.83 -20.80 16 6 C -0.14 -3.19 4.29 30.67 0.13 -3.05 16 7 C -0.12 -3.23 5.78 30.65 0.18 -3.05 16 8 C 0.05 1.57 3.88 86.32 0.33 1.91 16 9 N -0.54 -19.93 4.38 -896.39 -3.93 -23.85 16 10 C 0.10 4.17 4.97 86.30 0.43 4.60 16 11 C -0.02 -0.83 0.26 -52.93 -0.01 -0.84 16 12 C -0.47 -26.37 9.31 25.60 0.24 -26.13 16 13 H 0.03 1.86 8.06 -2.91 -0.02 1.84 16 14 C 0.03 1.90 5.33 84.65 0.45 2.35 16 15 N -0.94 -58.63 13.95 21.45 0.30 -58.33 16 16 Si 0.92 44.45 25.61 68.60 1.76 46.21 16 17 H -0.27 -12.71 6.57 99.48 0.65 -12.06 16 18 H -0.30 -14.57 7.11 99.48 0.71 -13.87 16 19 H -0.24 -10.45 6.25 99.48 0.62 -9.83 16 20 C -0.20 -7.76 8.17 30.59 0.25 -7.51 16 21 C -0.16 -5.92 7.07 30.59 0.22 -5.70 16 22 C 0.03 0.94 4.02 86.32 0.35 1.28 16 23 H 0.06 1.14 6.49 -2.39 -0.02 1.13 16 24 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.04 1.07 7.68 -2.39 -0.02 1.05 16 26 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.05 0.98 6.41 -2.39 -0.02 0.97 16 29 H 0.07 1.06 6.38 -2.39 -0.02 1.05 16 30 H 0.38 13.28 6.88 -74.06 -0.51 12.77 16 31 H 0.08 1.70 6.58 -2.39 -0.02 1.69 16 32 H 0.08 1.67 6.32 -2.39 -0.02 1.65 16 33 H 0.09 1.93 8.14 -2.38 -0.02 1.91 16 34 H 0.05 1.64 6.81 -2.39 -0.02 1.63 16 35 H 0.04 1.04 6.87 -2.39 -0.02 1.02 16 36 H 0.08 3.14 4.75 -2.39 -0.01 3.13 16 37 H 0.03 1.04 7.84 -2.38 -0.02 1.03 16 38 H 0.04 2.06 5.49 -2.39 -0.01 2.04 16 39 H 0.26 15.60 8.32 -92.71 -0.77 14.83 16 40 H 0.09 3.08 8.11 -2.39 -0.02 3.06 16 41 H 0.07 3.07 8.14 -2.39 -0.02 3.06 16 42 H 0.08 3.02 8.14 -2.39 -0.02 3.00 16 43 H 0.10 3.22 5.98 -2.39 -0.01 3.20 16 44 H 0.05 1.39 6.38 -2.39 -0.02 1.38 16 45 H 0.05 1.89 8.12 -2.39 -0.02 1.87 16 Total: -1.00 -64.16 321.79 0.38 -63.78 By element: Atomic # 1 Polarization: 30.80 SS G_CDS: 0.32 Total: 31.13 kcal Atomic # 6 Polarization: -41.89 SS G_CDS: 3.77 Total: -38.12 kcal Atomic # 7 Polarization: -78.56 SS G_CDS: -3.63 Total: -82.19 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -1.83 Total: -20.80 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 1.76 Total: 46.21 kcal Total: -64.16 0.38 -63.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710230789.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.421 kcal (2) G-P(sol) polarization free energy of solvation -64.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds