Wall clock time and date at job start Mon Mar 30 2020 06:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47170 * 2 1 4 4 C 1.53003 * 109.47170 * 180.02562 * 3 2 1 5 5 O 1.42903 * 109.50150 * 64.91800 * 4 3 2 6 6 C 1.53123 * 109.50035 * 304.80243 * 4 3 2 7 7 C 1.53120 * 109.15913 * 182.40528 * 6 4 3 8 8 C 1.53032 * 109.28032 * 57.65189 * 7 6 4 9 9 N 1.46848 * 109.52314 * 300.82437 * 8 7 6 10 10 C 1.46903 * 110.99826 * 185.84119 * 9 8 7 11 11 C 1.53000 * 109.47424 * 51.70596 * 10 9 8 12 12 C 1.50701 * 115.54692 * 54.24653 * 11 10 9 13 13 H 1.08001 * 119.99811 * 244.93325 * 12 11 10 14 14 C 1.37868 * 120.00342 * 64.93201 * 12 11 10 15 15 N 1.31514 * 119.99870 * 8.67903 * 14 12 11 16 16 Si 1.86800 * 120.00275 * 188.39669 * 14 12 11 17 17 H 1.48504 * 109.46961 * 55.00226 * 16 14 12 18 18 H 1.48495 * 109.47174 * 175.00483 * 16 14 12 19 19 H 1.48505 * 109.47128 * 295.00746 * 16 14 12 20 20 C 1.53003 * 117.51731 * 199.94464 * 11 10 9 21 21 C 1.53000 * 117.49766 * 268.57426 * 11 10 9 22 22 C 1.46844 * 111.20161 * 61.73901 * 9 8 7 23 23 H 1.08997 * 109.47372 * 300.00596 * 1 2 3 24 24 H 1.09004 * 109.47032 * 59.99758 * 1 2 3 25 25 H 1.09002 * 109.47215 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46710 * 239.99761 * 2 1 3 27 27 H 1.09000 * 109.46614 * 119.99617 * 2 1 3 28 28 H 1.08997 * 109.47460 * 59.99457 * 3 2 1 29 29 H 1.09000 * 109.47040 * 299.99357 * 3 2 1 30 30 H 0.96703 * 113.99919 * 300.07764 * 5 4 3 31 31 H 1.08998 * 109.52066 * 302.30550 * 6 4 3 32 32 H 1.08998 * 109.52382 * 62.43254 * 6 4 3 33 33 H 1.09002 * 109.50120 * 177.59649 * 7 6 4 34 34 H 1.09001 * 109.50096 * 297.66934 * 7 6 4 35 35 H 1.08998 * 109.46431 * 180.80229 * 8 7 6 36 36 H 1.09004 * 109.46278 * 60.83705 * 8 7 6 37 37 H 1.08999 * 109.46797 * 291.70593 * 10 9 8 38 38 H 1.09004 * 109.47315 * 171.70971 * 10 9 8 39 39 H 0.96999 * 120.00619 * 4.85439 * 15 14 12 40 40 H 1.08999 * 117.49503 * 214.96981 * 20 11 10 41 41 H 1.08997 * 117.50027 * 359.97438 * 20 11 10 42 42 H 1.08997 * 117.50040 * 359.97438 * 21 11 10 43 43 H 1.09001 * 117.49319 * 144.99686 * 21 11 10 44 44 H 1.09002 * 109.46184 * 58.27497 * 22 9 8 45 45 H 1.09003 * 109.46363 * 178.24239 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 8 4.0466 0.8716 -1.2210 6 6 4.0817 0.6185 1.1842 7 6 5.6117 0.6733 1.2111 8 6 6.0635 2.1326 1.3016 9 7 5.5493 2.8781 0.1457 10 6 6.0774 4.2488 0.1261 11 6 7.6018 4.2099 0.2509 12 6 8.3150 3.3502 -0.7606 13 1 8.8588 2.4748 -0.4376 14 6 8.2733 3.6811 -2.0984 15 7 7.7603 4.8319 -2.4754 16 14 8.9526 2.4984 -3.3748 17 1 8.2985 1.1742 -3.2203 18 1 8.6815 3.0288 -4.7350 19 1 10.4180 2.3519 -3.1835 20 6 8.3059 5.4868 0.7147 21 6 8.1976 4.2870 1.6581 22 6 4.0810 2.8794 0.1250 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6767 1.9564 0.8899 29 1 1.6768 1.9562 -0.8900 30 1 3.7605 -0.0406 -1.3666 31 1 3.6861 1.0308 2.1124 32 1 3.7551 -0.4159 1.0767 33 1 5.9803 0.1237 2.0772 34 1 6.0079 0.2248 0.3000 35 1 7.1526 2.1759 1.3066 36 1 5.6784 2.5757 2.2201 37 1 5.6588 4.8114 0.9606 38 1 5.8018 4.7310 -0.8118 39 1 7.4758 5.4775 -1.8097 40 1 9.2850 5.7048 0.2881 41 1 7.6831 6.3549 0.9305 42 1 7.5036 4.3659 2.4948 43 1 9.1054 3.7159 1.8521 44 1 3.7052 3.3190 1.0490 45 1 3.7303 3.4653 -0.7246 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710246152.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:27 Heat of formation + Delta-G solvation = -39.021750 kcal Electronic energy + Delta-G solvation = -22193.708897 eV Core-core repulsion = 19211.146202 eV Total energy + Delta-G solvation = -2982.562695 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.58023 -37.39037 -35.14376 -33.94062 -31.95245 -31.77108 -30.18171 -26.52112 -25.98707 -24.68976 -22.89222 -22.10738 -21.16830 -20.56628 -19.34958 -19.01838 -16.50789 -16.16355 -15.51521 -15.24468 -14.55853 -14.28431 -14.04773 -13.79583 -13.58413 -13.32162 -12.92795 -12.83091 -12.54690 -12.12752 -12.10572 -11.88745 -11.71144 -11.34224 -11.25348 -11.04248 -10.76200 -10.62886 -10.60077 -10.45598 -10.37310 -10.34264 -9.94975 -9.83606 -9.39573 -9.19599 -8.54386 -8.34204 -8.00460 -7.25688 -6.13027 -3.82138 3.56261 3.64559 3.79233 4.41298 4.54072 4.71618 4.85911 4.87127 4.90926 5.13968 5.20679 5.22732 5.34248 5.49036 5.58057 5.60590 5.68822 5.72292 5.84330 5.88314 5.91960 5.97672 6.01366 6.03631 6.09757 6.17967 6.19787 6.22297 6.30534 6.38805 6.42948 6.53539 6.58631 6.70499 6.82115 6.88582 7.03377 7.29126 7.35184 7.99960 8.03388 8.16550 8.45829 8.60837 9.07182 9.87683 11.25288 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.020506 B = 0.006237 C = 0.005501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.152823 B = 4488.131283 C = 5088.389440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.128 4.128 3 C -0.146 4.146 4 C 0.141 3.859 5 O -0.529 6.529 6 C -0.144 4.144 7 C -0.113 4.113 8 C 0.062 3.938 9 N -0.493 5.493 10 C 0.099 3.901 11 C 0.038 3.962 12 C -0.543 4.543 13 H 0.047 0.953 14 C 0.037 3.963 15 N -0.909 5.909 16 Si 1.061 2.939 17 H -0.286 1.286 18 H -0.286 1.286 19 H -0.294 1.294 20 C -0.195 4.195 21 C -0.201 4.201 22 C 0.070 3.930 23 H 0.052 0.948 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.359 0.641 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.054 0.946 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.007 0.993 37 H -0.005 1.005 38 H 0.075 0.925 39 H 0.270 0.730 40 H 0.081 0.919 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.077 0.923 44 H 0.029 0.971 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.589 -8.285 7.189 15.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.166 4.166 3 C -0.185 4.185 4 C 0.100 3.900 5 O -0.333 6.333 6 C -0.182 4.182 7 C -0.151 4.151 8 C -0.066 4.066 9 N -0.216 5.216 10 C -0.029 4.029 11 C 0.038 3.962 12 C -0.581 4.581 13 H 0.065 0.935 14 C -0.168 4.168 15 N -0.544 5.544 16 Si 0.891 3.109 17 H -0.212 1.212 18 H -0.212 1.212 19 H -0.221 1.221 20 C -0.233 4.233 21 C -0.239 4.239 22 C -0.058 4.058 23 H 0.071 0.929 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.204 0.796 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.097 0.903 35 H 0.113 0.887 36 H 0.025 0.975 37 H 0.013 0.987 38 H 0.093 0.907 39 H 0.082 0.918 40 H 0.100 0.900 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.096 0.904 44 H 0.047 0.953 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.966 -8.145 5.057 14.566 hybrid contribution -0.828 0.202 2.658 2.792 sum -11.794 -7.943 7.715 16.178 Atomic orbital electron populations 1.21755 0.95888 1.01374 1.01772 1.21594 0.95928 0.96991 1.02049 1.22297 0.96232 0.97184 1.02742 1.21156 0.90466 0.93691 0.84709 1.86844 1.76520 1.30695 1.39200 1.22309 0.97641 0.99794 0.98418 1.21523 0.94141 0.97427 1.01976 1.22090 1.02165 0.92555 0.89826 1.61580 1.03999 1.15000 1.41025 1.21677 0.95632 0.87012 0.98542 1.19106 0.89978 0.95432 0.91731 1.20998 1.34034 1.10769 0.92271 0.93488 1.25518 0.94995 0.98522 0.97760 1.70733 1.38958 1.06736 1.38005 0.83678 0.75398 0.75727 0.76141 1.21226 1.21165 1.22093 1.22953 1.02622 0.92031 1.05735 1.22846 1.02641 1.04041 0.94324 1.21978 0.90290 0.93894 0.99673 0.92900 0.92729 0.92917 0.91902 0.91652 0.91509 0.91076 0.79557 0.92171 0.91941 0.92697 0.90312 0.88688 0.97465 0.98652 0.90654 0.91850 0.90012 0.91964 0.91901 0.90403 0.95324 0.90811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.91 37.16 0.37 -0.90 16 2 C -0.13 -1.22 5.24 -26.73 -0.14 -1.36 16 3 C -0.15 -1.72 4.51 -26.73 -0.12 -1.84 16 4 C 0.14 2.10 0.75 -90.54 -0.07 2.03 16 5 O -0.53 -8.94 12.31 -35.23 -0.43 -9.38 16 6 C -0.14 -1.96 4.42 -26.61 -0.12 -2.07 16 7 C -0.11 -1.84 5.94 -26.65 -0.16 -2.00 16 8 C 0.06 1.19 4.73 -3.84 -0.02 1.17 16 9 N -0.49 -10.57 4.33 -234.67 -1.02 -11.59 16 10 C 0.10 2.31 4.82 -3.82 -0.02 2.29 16 11 C 0.04 0.94 0.13 -155.66 -0.02 0.92 16 12 C -0.54 -15.08 7.97 -34.44 -0.27 -15.35 16 13 H 0.05 1.33 7.83 -52.49 -0.41 0.92 16 14 C 0.04 1.06 5.37 -17.82 -0.10 0.97 16 15 N -0.91 -27.32 13.23 55.43 0.73 -26.59 16 16 Si 1.06 26.18 29.91 -169.99 -5.08 21.09 16 17 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 20 C -0.19 -4.53 9.38 -26.73 -0.25 -4.78 16 21 C -0.20 -4.39 8.15 -26.73 -0.22 -4.61 16 22 C 0.07 1.27 4.43 -3.84 -0.02 1.25 16 23 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.58 6.88 -51.93 -0.36 0.22 16 27 H 0.06 0.60 6.41 -51.93 -0.33 0.27 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.36 4.54 7.53 45.56 0.34 4.88 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.72 6.50 -51.93 -0.34 0.38 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.08 1.44 7.80 -51.93 -0.41 1.03 16 35 H 0.09 2.06 5.27 -51.93 -0.27 1.79 16 36 H 0.01 0.13 8.14 -51.93 -0.42 -0.29 16 37 H 0.00 -0.10 8.08 -51.93 -0.42 -0.52 16 38 H 0.08 1.95 6.94 -51.93 -0.36 1.59 16 39 H 0.27 8.05 6.14 -40.82 -0.25 7.80 16 40 H 0.08 1.99 8.14 -51.93 -0.42 1.57 16 41 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 42 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 43 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 44 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.07 1.41 8.12 -51.93 -0.42 0.99 16 LS Contribution 340.22 15.07 5.13 5.13 Total: -1.00 -30.81 340.22 -9.34 -40.15 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -7.52 Total: 5.47 kcal Atomic # 6 Polarization: -23.13 SS G_CDS: -1.15 Total: -24.28 kcal Atomic # 7 Polarization: -37.89 SS G_CDS: -0.28 Total: -38.18 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: -0.43 Total: -9.38 kcal Atomic # 14 Polarization: 26.18 SS G_CDS: -5.08 Total: 21.09 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.81 -9.34 -40.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710246152.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.129 kcal (2) G-P(sol) polarization free energy of solvation -30.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds