Wall clock time and date at job start Mon Mar 30 2020 06:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47170 * 2 1 4 4 C 1.53003 * 109.47170 * 180.02562 * 3 2 1 5 5 O 1.42903 * 109.50150 * 64.91800 * 4 3 2 6 6 C 1.53123 * 109.50035 * 304.80243 * 4 3 2 7 7 C 1.53120 * 109.15913 * 182.40528 * 6 4 3 8 8 C 1.53032 * 109.28032 * 57.65189 * 7 6 4 9 9 N 1.46848 * 109.52314 * 300.82437 * 8 7 6 10 10 C 1.46903 * 110.99826 * 185.84119 * 9 8 7 11 11 C 1.53000 * 109.47424 * 51.70596 * 10 9 8 12 12 C 1.50701 * 115.54692 * 54.24653 * 11 10 9 13 13 H 1.08001 * 119.99811 * 244.93325 * 12 11 10 14 14 C 1.37868 * 120.00342 * 64.93201 * 12 11 10 15 15 N 1.31514 * 119.99870 * 8.67903 * 14 12 11 16 16 Si 1.86800 * 120.00275 * 188.39669 * 14 12 11 17 17 H 1.48504 * 109.46961 * 55.00226 * 16 14 12 18 18 H 1.48495 * 109.47174 * 175.00483 * 16 14 12 19 19 H 1.48505 * 109.47128 * 295.00746 * 16 14 12 20 20 C 1.53003 * 117.51731 * 199.94464 * 11 10 9 21 21 C 1.53000 * 117.49766 * 268.57426 * 11 10 9 22 22 C 1.46844 * 111.20161 * 61.73901 * 9 8 7 23 23 H 1.08997 * 109.47372 * 300.00596 * 1 2 3 24 24 H 1.09004 * 109.47032 * 59.99758 * 1 2 3 25 25 H 1.09002 * 109.47215 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46710 * 239.99761 * 2 1 3 27 27 H 1.09000 * 109.46614 * 119.99617 * 2 1 3 28 28 H 1.08997 * 109.47460 * 59.99457 * 3 2 1 29 29 H 1.09000 * 109.47040 * 299.99357 * 3 2 1 30 30 H 0.96703 * 113.99919 * 300.07764 * 5 4 3 31 31 H 1.08998 * 109.52066 * 302.30550 * 6 4 3 32 32 H 1.08998 * 109.52382 * 62.43254 * 6 4 3 33 33 H 1.09002 * 109.50120 * 177.59649 * 7 6 4 34 34 H 1.09001 * 109.50096 * 297.66934 * 7 6 4 35 35 H 1.08998 * 109.46431 * 180.80229 * 8 7 6 36 36 H 1.09004 * 109.46278 * 60.83705 * 8 7 6 37 37 H 1.08999 * 109.46797 * 291.70593 * 10 9 8 38 38 H 1.09004 * 109.47315 * 171.70971 * 10 9 8 39 39 H 0.96999 * 120.00619 * 4.85439 * 15 14 12 40 40 H 1.08999 * 117.49503 * 214.96981 * 20 11 10 41 41 H 1.08997 * 117.50027 * 359.97438 * 20 11 10 42 42 H 1.08997 * 117.50040 * 359.97438 * 21 11 10 43 43 H 1.09001 * 117.49319 * 144.99686 * 21 11 10 44 44 H 1.09002 * 109.46184 * 58.27497 * 22 9 8 45 45 H 1.09003 * 109.46363 * 178.24239 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 8 4.0466 0.8716 -1.2210 6 6 4.0817 0.6185 1.1842 7 6 5.6117 0.6733 1.2111 8 6 6.0635 2.1326 1.3016 9 7 5.5493 2.8781 0.1457 10 6 6.0774 4.2488 0.1261 11 6 7.6018 4.2099 0.2509 12 6 8.3150 3.3502 -0.7606 13 1 8.8588 2.4748 -0.4376 14 6 8.2733 3.6811 -2.0984 15 7 7.7603 4.8319 -2.4754 16 14 8.9526 2.4984 -3.3748 17 1 8.2985 1.1742 -3.2203 18 1 8.6815 3.0288 -4.7350 19 1 10.4180 2.3519 -3.1835 20 6 8.3059 5.4868 0.7147 21 6 8.1976 4.2870 1.6581 22 6 4.0810 2.8794 0.1250 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6767 1.9564 0.8899 29 1 1.6768 1.9562 -0.8900 30 1 3.7605 -0.0406 -1.3666 31 1 3.6861 1.0308 2.1124 32 1 3.7551 -0.4159 1.0767 33 1 5.9803 0.1237 2.0772 34 1 6.0079 0.2248 0.3000 35 1 7.1526 2.1759 1.3066 36 1 5.6784 2.5757 2.2201 37 1 5.6588 4.8114 0.9606 38 1 5.8018 4.7310 -0.8118 39 1 7.4758 5.4775 -1.8097 40 1 9.2850 5.7048 0.2881 41 1 7.6831 6.3549 0.9305 42 1 7.5036 4.3659 2.4948 43 1 9.1054 3.7159 1.8521 44 1 3.7052 3.3190 1.0490 45 1 3.7303 3.4653 -0.7246 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710246152.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:26 Heat of formation + Delta-G solvation = -58.906830 kcal Electronic energy + Delta-G solvation = -22194.571179 eV Core-core repulsion = 19211.146202 eV Total energy + Delta-G solvation = -2983.424977 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.90582 -39.05782 -36.63293 -34.90828 -33.92350 -33.32318 -31.35654 -28.02111 -27.17450 -26.78552 -24.24838 -23.43657 -22.84133 -21.74652 -20.94414 -20.61584 -18.49065 -17.35302 -16.92973 -16.22413 -16.01265 -15.70758 -15.58412 -15.42978 -15.40380 -14.61323 -14.46078 -14.08587 -13.91152 -13.75919 -13.37196 -12.99206 -12.89973 -12.80323 -12.69516 -12.56984 -12.29679 -12.22571 -12.02710 -11.92974 -11.81196 -11.70070 -11.48845 -11.35897 -10.82018 -10.62735 -10.50541 -10.27888 -10.08096 -8.86149 -8.38376 -6.06252 1.55056 1.65677 1.81924 2.66939 2.96171 3.29670 3.39053 3.49038 3.81778 3.85174 3.94572 4.09698 4.18120 4.19809 4.29384 4.31078 4.45277 4.52339 4.54939 4.59788 4.65381 4.66345 4.75994 4.79624 4.81140 4.90047 4.92604 4.96263 5.00739 5.05060 5.11280 5.15503 5.26064 5.37176 5.39142 5.43755 5.46522 5.49526 5.52819 6.20945 6.34455 6.50500 6.53775 6.85554 7.07989 7.68815 9.00764 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.020506 B = 0.006237 C = 0.005501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.152823 B = 4488.131283 C = 5088.389440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C -0.137 4.137 4 C 0.142 3.858 5 O -0.561 6.561 6 C -0.135 4.135 7 C -0.109 4.109 8 C 0.063 3.937 9 N -0.518 5.518 10 C 0.111 3.889 11 C 0.012 3.988 12 C -0.543 4.543 13 H 0.033 0.967 14 C -0.010 4.010 15 N -0.936 5.936 16 Si 1.100 2.900 17 H -0.281 1.281 18 H -0.290 1.290 19 H -0.275 1.275 20 C -0.198 4.198 21 C -0.172 4.172 22 C 0.066 3.934 23 H 0.056 0.944 24 H 0.049 0.951 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.058 0.942 30 H 0.376 0.624 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.053 0.947 35 H 0.066 0.934 36 H 0.020 0.980 37 H 0.008 0.992 38 H 0.038 0.962 39 H 0.261 0.739 40 H 0.064 0.936 41 H 0.077 0.923 42 H 0.087 0.913 43 H 0.078 0.922 44 H 0.045 0.955 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.829 -10.108 8.906 18.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.175 4.175 4 C 0.101 3.899 5 O -0.368 6.368 6 C -0.172 4.172 7 C -0.147 4.147 8 C -0.064 4.064 9 N -0.241 5.241 10 C -0.017 4.017 11 C 0.011 3.989 12 C -0.580 4.580 13 H 0.052 0.948 14 C -0.209 4.209 15 N -0.574 5.574 16 Si 0.925 3.075 17 H -0.207 1.207 18 H -0.216 1.216 19 H -0.201 1.201 20 C -0.236 4.236 21 C -0.209 4.209 22 C -0.063 4.063 23 H 0.075 0.925 24 H 0.068 0.932 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.077 0.923 30 H 0.224 0.776 31 H 0.094 0.906 32 H 0.109 0.891 33 H 0.098 0.902 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.038 0.962 37 H 0.026 0.974 38 H 0.057 0.943 39 H 0.071 0.929 40 H 0.082 0.918 41 H 0.095 0.905 42 H 0.106 0.894 43 H 0.096 0.904 44 H 0.063 0.937 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -12.207 -9.986 6.796 17.174 hybrid contribution -0.431 0.784 2.162 2.340 sum -12.639 -9.203 8.958 18.019 Atomic orbital electron populations 1.21744 0.95013 1.02163 1.01778 1.21579 0.96642 0.95219 1.02701 1.22194 0.93688 0.98977 1.02658 1.21193 0.92281 0.91698 0.84742 1.86789 1.77341 1.32283 1.40367 1.22262 0.95366 1.01345 0.98261 1.21487 0.96281 0.95140 1.01809 1.22054 1.00472 0.94409 0.89488 1.61504 1.06128 1.13861 1.42644 1.21389 0.94782 0.88505 0.97029 1.19120 0.90671 0.96043 0.93076 1.21195 1.33396 1.10350 0.93087 0.94833 1.26610 0.95164 0.99134 1.00031 1.70824 1.41200 1.07575 1.37762 0.83161 0.76027 0.74273 0.74077 1.20685 1.21603 1.20082 1.22897 1.01771 0.92667 1.06272 1.22815 1.02486 1.01995 0.93560 1.22097 0.88379 0.96383 0.99409 0.92474 0.93221 0.91750 0.91670 0.90538 0.90505 0.92318 0.77582 0.90568 0.89078 0.90233 0.92837 0.91530 0.96204 0.97391 0.94343 0.92860 0.91780 0.90454 0.89432 0.90381 0.93711 0.93162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.91 71.98 0.71 -1.38 16 2 C -0.12 -1.97 5.24 30.59 0.16 -1.81 16 3 C -0.14 -2.91 4.51 30.59 0.14 -2.78 16 4 C 0.14 3.98 0.75 -10.74 -0.01 3.97 16 5 O -0.56 -18.54 12.31 -148.98 -1.83 -20.37 16 6 C -0.13 -3.21 4.42 30.68 0.14 -3.08 16 7 C -0.11 -3.32 5.94 30.64 0.18 -3.14 16 8 C 0.06 2.38 4.73 86.32 0.41 2.79 16 9 N -0.52 -22.23 4.33 -896.37 -3.88 -26.11 16 10 C 0.11 5.26 4.82 86.30 0.42 5.68 16 11 C 0.01 0.58 0.13 -52.93 -0.01 0.57 16 12 C -0.54 -30.67 7.97 25.60 0.20 -30.46 16 13 H 0.03 1.94 7.83 -2.91 -0.02 1.91 16 14 C -0.01 -0.59 5.37 84.65 0.45 -0.13 16 15 N -0.94 -57.98 13.23 21.44 0.28 -57.70 16 16 Si 1.10 53.60 29.91 68.60 2.05 55.65 16 17 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 18 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 19 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 20 C -0.20 -9.20 9.38 30.60 0.29 -8.91 16 21 C -0.17 -7.29 8.15 30.60 0.25 -7.04 16 22 C 0.07 2.34 4.43 86.32 0.38 2.72 16 23 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 24 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.06 1.01 6.88 -2.39 -0.02 1.00 16 27 H 0.08 1.07 6.41 -2.39 -0.02 1.06 16 28 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.38 8.94 7.53 -74.06 -0.56 8.38 16 31 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.09 1.69 6.50 -2.39 -0.02 1.68 16 33 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.05 1.90 7.80 -2.39 -0.02 1.88 16 35 H 0.07 2.85 5.27 -2.39 -0.01 2.84 16 36 H 0.02 0.69 8.14 -2.38 -0.02 0.67 16 37 H 0.01 0.36 8.08 -2.39 -0.02 0.34 16 38 H 0.04 2.07 6.94 -2.38 -0.02 2.06 16 39 H 0.26 16.17 6.14 -92.71 -0.57 15.60 16 40 H 0.06 3.17 8.14 -2.39 -0.02 3.15 16 41 H 0.08 3.32 8.14 -2.39 -0.02 3.30 16 42 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 43 H 0.08 3.30 8.14 -2.39 -0.02 3.28 16 44 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.05 1.98 8.12 -2.39 -0.02 1.96 16 Total: -1.00 -67.94 340.22 0.92 -67.02 By element: Atomic # 1 Polarization: 23.93 SS G_CDS: 0.58 Total: 24.51 kcal Atomic # 6 Polarization: -46.72 SS G_CDS: 3.72 Total: -43.01 kcal Atomic # 7 Polarization: -80.21 SS G_CDS: -3.60 Total: -83.81 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: -1.83 Total: -20.37 kcal Atomic # 14 Polarization: 53.60 SS G_CDS: 2.05 Total: 55.65 kcal Total: -67.94 0.92 -67.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710246152.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.112 kcal (2) G-P(sol) polarization free energy of solvation -67.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds