Wall clock time and date at job start Mon Mar 30 2020 06:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53002 * 109.46693 * 2 1 4 4 C 1.52999 * 109.46670 * 179.97438 * 3 2 1 5 5 O 1.42899 * 109.52536 * 300.12544 * 4 3 2 6 6 C 1.53120 * 109.52550 * 180.02562 * 4 3 2 7 7 C 1.53029 * 109.28320 * 182.37672 * 6 4 3 8 8 N 1.46855 * 109.52223 * 59.17995 * 7 6 4 9 9 C 1.46905 * 110.99837 * 174.16004 * 8 7 6 10 10 C 1.53002 * 109.46921 * 175.94177 * 9 8 7 11 11 C 1.50703 * 115.54790 * 54.71343 * 10 9 8 12 12 H 1.08003 * 120.00119 * 268.21004 * 11 10 9 13 13 C 1.37874 * 119.99833 * 88.20175 * 11 10 9 14 14 N 1.31511 * 120.00121 * 177.02574 * 13 11 10 15 15 Si 1.86806 * 120.00183 * 357.30670 * 13 11 10 16 16 H 1.48494 * 109.46999 * 94.77191 * 15 13 11 17 17 H 1.48498 * 109.47034 * 214.77127 * 15 13 11 18 18 H 1.48502 * 109.46981 * 334.77301 * 15 13 11 19 19 C 1.52995 * 117.49740 * 200.38300 * 10 9 8 20 20 C 1.52997 * 117.49921 * 269.04472 * 10 9 8 21 21 C 1.46849 * 111.19472 * 298.25696 * 8 7 6 22 22 C 1.53036 * 109.52124 * 61.74467 * 21 8 7 23 23 H 1.08992 * 109.46967 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47018 * 299.99928 * 1 2 3 25 25 H 1.09001 * 109.47141 * 60.00101 * 1 2 3 26 26 H 1.08999 * 109.47018 * 240.00072 * 2 1 3 27 27 H 1.09001 * 109.47141 * 119.99899 * 2 1 3 28 28 H 1.08999 * 109.47330 * 60.00263 * 3 2 1 29 29 H 1.09001 * 109.47244 * 299.99836 * 3 2 1 30 30 H 0.96704 * 114.00009 * 59.87350 * 5 4 3 31 31 H 1.09006 * 109.50363 * 62.42961 * 6 4 3 32 32 H 1.09005 * 109.50030 * 302.31986 * 6 4 3 33 33 H 1.09000 * 109.46335 * 299.16537 * 7 6 4 34 34 H 1.09000 * 109.45700 * 179.18600 * 7 6 4 35 35 H 1.09003 * 109.46755 * 55.94602 * 9 8 7 36 36 H 1.08993 * 109.47220 * 295.94391 * 9 8 7 37 37 H 0.97001 * 120.00650 * 185.01455 * 14 13 11 38 38 H 1.09009 * 117.49479 * 215.00253 * 19 10 9 39 39 H 1.08998 * 117.50530 * 0.02761 * 19 10 9 40 40 H 1.09001 * 117.50212 * 359.97438 * 20 10 9 41 41 H 1.09005 * 117.49762 * 144.97759 * 20 10 9 42 42 H 1.08997 * 109.45828 * 181.76148 * 21 8 7 43 43 H 1.09003 * 109.46202 * 301.72724 * 21 8 7 44 44 H 1.09007 * 109.50111 * 180.87708 * 22 21 8 45 45 H 1.08994 * 109.50409 * 60.75955 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4425 0.0006 5 8 4.0471 0.7668 1.1658 6 6 4.0818 2.8857 0.0013 7 6 5.6109 2.8796 -0.0580 8 7 6.0521 2.1855 -1.2745 9 6 7.5092 2.2804 -1.4357 10 6 7.9418 1.4629 -2.6545 11 6 7.2482 1.8070 -3.9474 12 1 6.3517 1.2785 -4.2366 13 6 7.7579 2.7965 -4.7610 14 7 7.1866 3.0569 -5.9166 15 14 9.2647 3.7621 -4.2255 16 1 10.4823 3.1421 -4.8071 17 1 9.1483 5.1644 -4.7001 18 1 9.3612 3.7473 -2.7437 19 6 9.4079 1.0324 -2.7321 20 6 8.3216 -0.0013 -2.4244 21 6 5.6127 0.7843 -1.2753 22 6 4.0836 0.7278 -1.2523 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6767 1.9564 0.8900 29 1 1.6767 1.9564 -0.8900 30 1 3.7606 -0.1546 1.2312 31 1 3.7548 3.3874 0.9121 32 1 3.6860 3.4125 -0.8671 33 1 6.0062 2.3647 0.8176 34 1 5.9777 3.9060 -0.0722 35 1 7.9995 1.8902 -0.5438 36 1 7.7917 3.3233 -1.5789 37 1 7.5865 3.7014 -6.5211 38 1 9.8708 0.9980 -3.7185 39 1 10.0642 1.3311 -1.9148 40 1 8.2636 -0.3820 -1.4048 41 1 8.0694 -0.7157 -3.2081 42 1 5.9810 0.2887 -2.1735 43 1 6.0081 0.2792 -0.3939 44 1 3.7580 -0.3124 -1.2371 45 1 3.6879 1.2207 -2.1403 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710663668.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:49 Heat of formation + Delta-G solvation = -34.088396 kcal Electronic energy + Delta-G solvation = -22003.393483 eV Core-core repulsion = 19021.044714 eV Total energy + Delta-G solvation = -2982.348769 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.67378 -37.55028 -35.31882 -34.02492 -31.94111 -31.42091 -30.44434 -27.78941 -25.81523 -24.45938 -23.28064 -22.15079 -21.36482 -20.56821 -19.44548 -18.76824 -16.41420 -16.23091 -15.52277 -15.17278 -14.85508 -14.47993 -14.24851 -14.18170 -13.53369 -13.33728 -13.05791 -12.77741 -12.66806 -12.37969 -12.13359 -11.87240 -11.71920 -11.36899 -11.24129 -11.13978 -11.04770 -10.83826 -10.77475 -10.65556 -10.41869 -10.38352 -9.98098 -9.75053 -9.46940 -9.36043 -8.91253 -8.41937 -8.39090 -7.39369 -5.95321 -3.94994 3.37025 3.46699 3.51137 4.34053 4.54223 4.57759 4.66621 4.86099 4.87982 5.05266 5.14553 5.24058 5.32714 5.38590 5.56194 5.59665 5.70608 5.74144 5.82862 5.84544 5.92364 5.96829 5.98995 6.07867 6.10375 6.14525 6.18132 6.20699 6.28132 6.28818 6.40852 6.49166 6.50619 6.53909 6.69262 6.73145 6.88801 7.12705 7.22109 7.79030 7.80764 7.96901 7.99203 8.65043 9.07024 9.67952 11.16612 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.026328 B = 0.005309 C = 0.005148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.247043 B = 5273.164590 C = 5437.214537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.130 4.130 3 C -0.143 4.143 4 C 0.132 3.868 5 O -0.559 6.559 6 C -0.097 4.097 7 C 0.057 3.943 8 N -0.511 5.511 9 C 0.096 3.904 10 C 0.008 3.992 11 C -0.456 4.456 12 H 0.077 0.923 13 C 0.076 3.924 14 N -0.904 5.904 15 Si 0.877 3.123 16 H -0.284 1.284 17 H -0.296 1.296 18 H -0.259 1.259 19 C -0.202 4.202 20 C -0.186 4.186 21 C 0.065 3.935 22 C -0.140 4.140 23 H 0.052 0.948 24 H 0.051 0.949 25 H 0.054 0.946 26 H 0.068 0.932 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.367 0.633 31 H 0.064 0.936 32 H 0.083 0.917 33 H 0.030 0.970 34 H 0.065 0.935 35 H 0.004 0.996 36 H 0.068 0.932 37 H 0.261 0.739 38 H 0.087 0.913 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.085 0.915 42 H 0.094 0.906 43 H 0.020 0.980 44 H 0.062 0.938 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.452 -4.577 12.869 16.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.168 4.168 3 C -0.181 4.181 4 C 0.092 3.908 5 O -0.365 6.365 6 C -0.135 4.135 7 C -0.071 4.071 8 N -0.235 5.235 9 C -0.032 4.032 10 C 0.007 3.993 11 C -0.494 4.494 12 H 0.095 0.905 13 C -0.125 4.125 14 N -0.543 5.543 15 Si 0.706 3.294 16 H -0.210 1.210 17 H -0.223 1.223 18 H -0.183 1.183 19 C -0.239 4.239 20 C -0.223 4.223 21 C -0.063 4.063 22 C -0.178 4.178 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.087 0.913 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.214 0.786 31 H 0.082 0.918 32 H 0.102 0.898 33 H 0.048 0.952 34 H 0.084 0.916 35 H 0.022 0.978 36 H 0.086 0.914 37 H 0.071 0.929 38 H 0.106 0.894 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.104 0.896 42 H 0.113 0.887 43 H 0.038 0.962 44 H 0.080 0.920 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.430 -3.584 12.440 15.449 hybrid contribution 1.001 -0.335 0.728 1.282 sum -7.429 -3.919 13.169 15.619 Atomic orbital electron populations 1.21747 0.95835 1.01422 1.01764 1.21602 0.96062 0.97111 1.02007 1.22273 0.95985 0.97154 1.02704 1.21294 0.91278 0.93210 0.85014 1.86543 1.77203 1.28302 1.44451 1.21543 0.96193 0.93756 1.02026 1.21964 0.94719 0.98829 0.91596 1.61741 1.13111 1.13757 1.34877 1.21842 0.86023 1.00386 0.94931 1.19446 0.92483 0.91574 0.95809 1.20105 1.11271 1.18357 0.99665 0.90480 1.24894 0.96755 0.96043 0.94819 1.69877 1.39642 1.35488 1.09304 0.86888 0.83481 0.79045 0.79955 1.21047 1.22343 1.18345 1.22987 0.93373 1.06567 1.01019 1.22898 1.05540 0.94310 0.99596 1.22008 0.93511 0.89689 1.01079 1.22296 0.97326 0.99818 0.98360 0.92914 0.92954 0.92640 0.91326 0.92243 0.91651 0.90886 0.78554 0.91767 0.89839 0.95160 0.91603 0.97773 0.91373 0.92900 0.89445 0.91276 0.91416 0.89613 0.88743 0.96166 0.91975 0.90031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.91 37.16 0.37 -0.90 16 2 C -0.13 -1.22 5.28 -26.73 -0.14 -1.37 16 3 C -0.14 -1.58 4.49 -26.73 -0.12 -1.70 16 4 C 0.13 1.76 0.74 -90.50 -0.07 1.70 16 5 O -0.56 -7.46 11.80 -35.23 -0.42 -7.87 16 6 C -0.10 -1.43 5.11 -26.65 -0.14 -1.56 16 7 C 0.06 0.98 5.33 -3.83 -0.02 0.96 16 8 N -0.51 -10.15 4.46 -234.66 -1.05 -11.20 16 9 C 0.10 2.05 4.79 -3.82 -0.02 2.03 16 10 C 0.01 0.18 0.06 -155.66 -0.01 0.18 16 11 C -0.46 -12.46 8.66 -34.44 -0.30 -12.76 16 12 H 0.08 2.31 7.91 -52.48 -0.42 1.90 16 13 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 14 N -0.90 -27.59 13.95 55.43 0.77 -26.81 16 15 Si 0.88 21.93 24.99 -169.99 -4.25 17.69 16 16 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 17 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 18 H -0.26 -6.13 5.47 56.52 0.31 -5.82 16 19 C -0.20 -4.33 7.55 -26.70 -0.20 -4.54 16 20 C -0.19 -3.78 8.11 -26.69 -0.22 -4.00 16 21 C 0.06 1.18 4.59 -3.83 -0.02 1.16 16 22 C -0.14 -2.10 4.66 -26.65 -0.12 -2.23 16 23 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.67 6.50 -51.93 -0.34 0.34 16 27 H 0.06 0.51 6.78 -51.93 -0.35 0.15 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.37 3.73 7.33 45.56 0.33 4.07 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.03 0.53 7.76 -51.93 -0.40 0.13 16 34 H 0.07 1.10 8.12 -51.93 -0.42 0.67 16 35 H 0.00 0.09 8.09 -51.93 -0.42 -0.33 16 36 H 0.07 1.54 6.48 -51.93 -0.34 1.20 16 37 H 0.26 7.55 8.32 -40.82 -0.34 7.21 16 38 H 0.09 1.97 7.22 -51.92 -0.37 1.60 16 39 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 40 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 41 H 0.09 1.75 8.14 -51.93 -0.42 1.33 16 42 H 0.09 1.92 5.15 -51.93 -0.27 1.65 16 43 H 0.02 0.36 7.76 -51.93 -0.40 -0.04 16 44 H 0.06 0.81 6.59 -51.92 -0.34 0.46 16 45 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 333.19 15.07 5.02 5.02 Total: -1.00 -30.07 333.19 -8.63 -38.71 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -7.62 Total: 5.44 kcal Atomic # 6 Polarization: -19.87 SS G_CDS: -1.10 Total: -20.97 kcal Atomic # 7 Polarization: -37.74 SS G_CDS: -0.27 Total: -38.01 kcal Atomic # 8 Polarization: -7.46 SS G_CDS: -0.42 Total: -7.87 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.25 Total: 17.69 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.07 -8.63 -38.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710663668.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.617 kcal (2) G-P(sol) polarization free energy of solvation -30.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds