Wall clock time and date at job start Mon Mar 30 2020 06:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53002 * 109.46693 * 2 1 4 4 C 1.52999 * 109.46670 * 179.97438 * 3 2 1 5 5 O 1.42899 * 109.52536 * 300.12544 * 4 3 2 6 6 C 1.53120 * 109.52550 * 180.02562 * 4 3 2 7 7 C 1.53029 * 109.28320 * 182.37672 * 6 4 3 8 8 N 1.46855 * 109.52223 * 59.17995 * 7 6 4 9 9 C 1.46905 * 110.99837 * 174.16004 * 8 7 6 10 10 C 1.53002 * 109.46921 * 175.94177 * 9 8 7 11 11 C 1.50703 * 115.54790 * 54.71343 * 10 9 8 12 12 H 1.08003 * 120.00119 * 268.21004 * 11 10 9 13 13 C 1.37874 * 119.99833 * 88.20175 * 11 10 9 14 14 N 1.31511 * 120.00121 * 177.02574 * 13 11 10 15 15 Si 1.86806 * 120.00183 * 357.30670 * 13 11 10 16 16 H 1.48494 * 109.46999 * 94.77191 * 15 13 11 17 17 H 1.48498 * 109.47034 * 214.77127 * 15 13 11 18 18 H 1.48502 * 109.46981 * 334.77301 * 15 13 11 19 19 C 1.52995 * 117.49740 * 200.38300 * 10 9 8 20 20 C 1.52997 * 117.49921 * 269.04472 * 10 9 8 21 21 C 1.46849 * 111.19472 * 298.25696 * 8 7 6 22 22 C 1.53036 * 109.52124 * 61.74467 * 21 8 7 23 23 H 1.08992 * 109.46967 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47018 * 299.99928 * 1 2 3 25 25 H 1.09001 * 109.47141 * 60.00101 * 1 2 3 26 26 H 1.08999 * 109.47018 * 240.00072 * 2 1 3 27 27 H 1.09001 * 109.47141 * 119.99899 * 2 1 3 28 28 H 1.08999 * 109.47330 * 60.00263 * 3 2 1 29 29 H 1.09001 * 109.47244 * 299.99836 * 3 2 1 30 30 H 0.96704 * 114.00009 * 59.87350 * 5 4 3 31 31 H 1.09006 * 109.50363 * 62.42961 * 6 4 3 32 32 H 1.09005 * 109.50030 * 302.31986 * 6 4 3 33 33 H 1.09000 * 109.46335 * 299.16537 * 7 6 4 34 34 H 1.09000 * 109.45700 * 179.18600 * 7 6 4 35 35 H 1.09003 * 109.46755 * 55.94602 * 9 8 7 36 36 H 1.08993 * 109.47220 * 295.94391 * 9 8 7 37 37 H 0.97001 * 120.00650 * 185.01455 * 14 13 11 38 38 H 1.09009 * 117.49479 * 215.00253 * 19 10 9 39 39 H 1.08998 * 117.50530 * 0.02761 * 19 10 9 40 40 H 1.09001 * 117.50212 * 359.97438 * 20 10 9 41 41 H 1.09005 * 117.49762 * 144.97759 * 20 10 9 42 42 H 1.08997 * 109.45828 * 181.76148 * 21 8 7 43 43 H 1.09003 * 109.46202 * 301.72724 * 21 8 7 44 44 H 1.09007 * 109.50111 * 180.87708 * 22 21 8 45 45 H 1.08994 * 109.50409 * 60.75955 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4425 0.0006 5 8 4.0471 0.7668 1.1658 6 6 4.0818 2.8857 0.0013 7 6 5.6109 2.8796 -0.0580 8 7 6.0521 2.1855 -1.2745 9 6 7.5092 2.2804 -1.4357 10 6 7.9418 1.4629 -2.6545 11 6 7.2482 1.8070 -3.9474 12 1 6.3517 1.2785 -4.2366 13 6 7.7579 2.7965 -4.7610 14 7 7.1866 3.0569 -5.9166 15 14 9.2647 3.7621 -4.2255 16 1 10.4823 3.1421 -4.8071 17 1 9.1483 5.1644 -4.7001 18 1 9.3612 3.7473 -2.7437 19 6 9.4079 1.0324 -2.7321 20 6 8.3216 -0.0013 -2.4244 21 6 5.6127 0.7843 -1.2753 22 6 4.0836 0.7278 -1.2523 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6767 1.9564 0.8900 29 1 1.6767 1.9564 -0.8900 30 1 3.7606 -0.1546 1.2312 31 1 3.7548 3.3874 0.9121 32 1 3.6860 3.4125 -0.8671 33 1 6.0062 2.3647 0.8176 34 1 5.9777 3.9060 -0.0722 35 1 7.9995 1.8902 -0.5438 36 1 7.7917 3.3233 -1.5789 37 1 7.5865 3.7014 -6.5211 38 1 9.8708 0.9980 -3.7185 39 1 10.0642 1.3311 -1.9148 40 1 8.2636 -0.3820 -1.4048 41 1 8.0694 -0.7157 -3.2081 42 1 5.9810 0.2887 -2.1735 43 1 6.0081 0.2792 -0.3939 44 1 3.7580 -0.3124 -1.2371 45 1 3.6879 1.2207 -2.1403 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710663668.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:49 Heat of formation + Delta-G solvation = -54.577911 kcal Electronic energy + Delta-G solvation = -22004.281975 eV Core-core repulsion = 19021.044714 eV Total energy + Delta-G solvation = -2983.237261 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.90993 -39.09128 -36.73205 -34.88236 -34.10371 -32.62530 -31.74380 -28.99027 -27.69518 -25.94824 -24.56555 -23.45080 -22.89852 -21.56817 -20.68060 -20.63429 -18.27328 -17.34190 -16.95613 -16.63034 -16.18315 -15.83698 -15.63631 -15.40396 -15.12634 -14.75560 -14.64843 -14.19025 -13.85063 -13.73974 -13.45906 -13.11840 -12.95930 -12.77310 -12.66792 -12.42255 -12.31114 -12.17063 -12.11237 -12.05794 -11.92274 -11.71488 -11.48489 -11.39718 -10.90256 -10.86323 -10.59785 -10.40618 -10.18908 -8.89446 -8.16283 -6.18655 1.37502 1.41765 1.53260 2.44821 2.98225 3.17891 3.35101 3.46254 3.71603 3.86772 3.94184 4.10668 4.19690 4.30092 4.34871 4.39078 4.45982 4.46332 4.56993 4.60614 4.66910 4.70672 4.81556 4.82538 4.84536 4.87811 4.98025 5.00515 5.05731 5.07653 5.15197 5.22310 5.25647 5.36337 5.37212 5.40977 5.46026 5.47999 5.52864 5.80617 6.34157 6.50922 6.51660 6.86211 6.91017 7.47326 8.99471 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.026328 B = 0.005309 C = 0.005148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.247043 B = 5273.164590 C = 5437.214537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.129 4.129 3 C -0.136 4.136 4 C 0.141 3.859 5 O -0.567 6.567 6 C -0.099 4.099 7 C 0.059 3.941 8 N -0.535 5.535 9 C 0.102 3.898 10 C -0.016 4.016 11 C -0.443 4.443 12 H 0.033 0.967 13 C 0.017 3.983 14 N -0.956 5.956 15 Si 0.934 3.066 16 H -0.276 1.276 17 H -0.304 1.304 18 H -0.235 1.235 19 C -0.198 4.198 20 C -0.163 4.163 21 C 0.070 3.930 22 C -0.136 4.136 23 H 0.061 0.939 24 H 0.057 0.943 25 H 0.049 0.951 26 H 0.062 0.938 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.382 0.618 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.031 0.969 34 H 0.065 0.935 35 H 0.023 0.977 36 H 0.053 0.947 37 H 0.260 0.740 38 H 0.073 0.927 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.078 0.922 42 H 0.066 0.934 43 H 0.027 0.973 44 H 0.084 0.916 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.200 -5.244 15.678 18.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.166 4.166 3 C -0.174 4.174 4 C 0.101 3.899 5 O -0.375 6.375 6 C -0.137 4.137 7 C -0.069 4.069 8 N -0.260 5.260 9 C -0.026 4.026 10 C -0.017 4.017 11 C -0.481 4.481 12 H 0.051 0.949 13 C -0.178 4.178 14 N -0.598 5.598 15 Si 0.760 3.240 16 H -0.202 1.202 17 H -0.231 1.231 18 H -0.158 1.158 19 C -0.236 4.236 20 C -0.200 4.200 21 C -0.058 4.058 22 C -0.174 4.174 23 H 0.080 0.920 24 H 0.076 0.924 25 H 0.069 0.931 26 H 0.081 0.919 27 H 0.092 0.908 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.232 0.768 31 H 0.101 0.899 32 H 0.092 0.908 33 H 0.049 0.951 34 H 0.083 0.917 35 H 0.040 0.960 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.092 0.908 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.097 0.903 42 H 0.084 0.916 43 H 0.046 0.954 44 H 0.102 0.898 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.181 -4.281 15.281 17.853 hybrid contribution 0.846 -0.216 -0.155 0.887 sum -7.334 -4.497 15.125 17.401 Atomic orbital electron populations 1.21738 0.95083 1.02065 1.01817 1.21592 0.96723 0.95895 1.02373 1.22187 0.94033 0.98442 1.02744 1.21113 0.92622 0.92056 0.84109 1.86507 1.77533 1.29605 1.43863 1.21563 0.94553 0.95051 1.02506 1.22000 0.96265 0.98365 0.90272 1.61711 1.12384 1.15043 1.36848 1.21659 0.87292 0.99051 0.94564 1.19326 0.93662 0.94176 0.94555 1.20200 1.09588 1.16909 1.01403 0.94922 1.25674 1.00001 0.97336 0.94797 1.70030 1.41776 1.37036 1.10958 0.85965 0.80061 0.76993 0.80937 1.20224 1.23137 1.15799 1.23036 0.92751 1.06417 1.01387 1.22869 1.03580 0.92711 1.00889 1.21910 0.95402 0.88627 0.99822 1.22261 0.95240 1.01289 0.98561 0.92011 0.92392 0.93142 0.91940 0.90849 0.90868 0.91576 0.76803 0.89916 0.90809 0.95052 0.91665 0.95950 0.92904 0.93096 0.90802 0.88573 0.88669 0.90348 0.91601 0.95441 0.89795 0.92358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.91 71.99 0.71 -1.48 16 2 C -0.13 -2.10 5.28 30.60 0.16 -1.94 16 3 C -0.14 -2.72 4.49 30.59 0.14 -2.58 16 4 C 0.14 3.50 0.74 -10.71 -0.01 3.49 16 5 O -0.57 -13.41 11.80 -148.98 -1.76 -15.17 16 6 C -0.10 -2.76 5.11 30.64 0.16 -2.60 16 7 C 0.06 1.92 5.33 86.32 0.46 2.38 16 8 N -0.54 -20.94 4.46 -896.34 -4.00 -24.94 16 9 C 0.10 4.22 4.79 86.30 0.41 4.64 16 10 C -0.02 -0.73 0.06 -52.93 0.00 -0.73 16 11 C -0.44 -24.84 8.66 25.60 0.22 -24.62 16 12 H 0.03 2.07 7.91 -2.91 -0.02 2.05 16 13 C 0.02 1.02 5.47 84.65 0.46 1.48 16 14 N -0.96 -60.61 13.95 21.45 0.30 -60.31 16 15 Si 0.93 45.39 24.99 68.60 1.71 47.10 16 16 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 17 H -0.30 -15.04 7.11 99.48 0.71 -14.33 16 18 H -0.23 -10.40 5.47 99.48 0.54 -9.86 16 19 C -0.20 -8.05 7.55 30.62 0.23 -7.81 16 20 C -0.16 -6.33 8.11 30.62 0.25 -6.08 16 21 C 0.07 2.48 4.59 86.33 0.40 2.88 16 22 C -0.14 -3.97 4.66 30.65 0.14 -3.82 16 23 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 24 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.06 1.10 6.50 -2.39 -0.02 1.09 16 27 H 0.07 1.00 6.78 -2.39 -0.02 0.99 16 28 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.38 6.45 7.33 -74.05 -0.54 5.90 16 31 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 32 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 33 H 0.03 1.02 7.76 -2.39 -0.02 1.00 16 34 H 0.06 2.10 8.12 -2.39 -0.02 2.08 16 35 H 0.02 0.84 8.09 -2.39 -0.02 0.82 16 36 H 0.05 2.31 6.48 -2.39 -0.02 2.29 16 37 H 0.26 15.63 8.32 -92.71 -0.77 14.86 16 38 H 0.07 3.20 7.22 -2.38 -0.02 3.19 16 39 H 0.10 3.41 8.14 -2.39 -0.02 3.39 16 40 H 0.10 3.18 8.14 -2.39 -0.02 3.16 16 41 H 0.08 3.14 8.14 -2.38 -0.02 3.12 16 42 H 0.07 2.69 5.15 -2.39 -0.01 2.68 16 43 H 0.03 0.93 7.76 -2.39 -0.02 0.91 16 44 H 0.08 2.05 6.59 -2.38 -0.02 2.04 16 45 H 0.06 1.97 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -66.09 333.19 0.23 -65.86 By element: Atomic # 1 Polarization: 24.01 SS G_CDS: 0.24 Total: 24.25 kcal Atomic # 6 Polarization: -40.53 SS G_CDS: 3.73 Total: -36.79 kcal Atomic # 7 Polarization: -81.56 SS G_CDS: -3.70 Total: -85.25 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: -1.76 Total: -15.17 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 1.71 Total: 47.10 kcal Total: -66.09 0.23 -65.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710663668.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.279 kcal (2) G-P(sol) polarization free energy of solvation -66.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds