Wall clock time and date at job start Mon Mar 30 2020 06:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47324 * 2 1 4 4 C 1.52998 * 109.47403 * 120.00558 * 2 1 3 5 5 O 1.42902 * 109.52220 * 64.86784 * 4 2 1 6 6 C 1.53116 * 109.52582 * 184.99680 * 4 2 1 7 7 C 1.53033 * 109.28167 * 177.62197 * 6 4 2 8 8 N 1.46855 * 109.52248 * 300.82343 * 7 6 4 9 9 C 1.46900 * 110.99887 * 185.83578 * 8 7 6 10 10 C 1.52997 * 109.47098 * 163.98026 * 9 8 7 11 11 C 1.50705 * 115.55093 * 305.38957 * 10 9 8 12 12 H 1.07991 * 120.00421 * 116.08024 * 11 10 9 13 13 C 1.37884 * 119.99601 * 296.07598 * 11 10 9 14 14 N 1.31507 * 119.99828 * 176.66750 * 13 11 10 15 15 Si 1.86793 * 119.99978 * 356.94527 * 13 11 10 16 16 H 1.48504 * 109.47122 * 93.57849 * 15 13 11 17 17 H 1.48496 * 109.47155 * 213.57930 * 15 13 11 18 18 H 1.48502 * 109.47636 * 333.57958 * 15 13 11 19 19 C 1.53005 * 117.49786 * 91.05317 * 10 9 8 20 20 C 1.52999 * 117.50138 * 159.71250 * 10 9 8 21 21 C 1.46844 * 111.19630 * 61.74182 * 8 7 6 22 22 C 1.53042 * 109.52378 * 298.25358 * 21 8 7 23 23 H 1.09004 * 109.47259 * 299.99592 * 1 2 3 24 24 H 1.09001 * 109.47604 * 59.99162 * 1 2 3 25 25 H 1.09004 * 109.47292 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46550 * 240.00644 * 2 1 3 27 27 H 1.08998 * 109.46982 * 180.02562 * 3 2 1 28 28 H 1.08999 * 109.47001 * 300.00695 * 3 2 1 29 29 H 1.09004 * 109.46619 * 60.00016 * 3 2 1 30 30 H 0.96696 * 114.00051 * 180.12897 * 5 4 2 31 31 H 1.08998 * 109.50463 * 57.68022 * 6 4 2 32 32 H 1.09000 * 109.50232 * 297.56889 * 6 4 2 33 33 H 1.08997 * 109.46598 * 180.80678 * 7 6 4 34 34 H 1.09002 * 109.45529 * 60.83007 * 7 6 4 35 35 H 1.09004 * 109.47049 * 43.98453 * 9 8 7 36 36 H 1.08995 * 109.47194 * 283.98200 * 9 8 7 37 37 H 0.97002 * 120.00459 * 180.02562 * 14 13 11 38 38 H 1.08996 * 117.49756 * 215.00710 * 19 10 9 39 39 H 1.08999 * 117.49802 * 0.02562 * 19 10 9 40 40 H 1.09001 * 117.49662 * 359.97438 * 20 10 9 41 41 H 1.09002 * 117.49747 * 144.97432 * 20 10 9 42 42 H 1.08998 * 109.46693 * 58.27058 * 21 8 7 43 43 H 1.09000 * 109.45948 * 178.24647 * 21 8 7 44 44 H 1.08994 * 109.50707 * 299.24563 * 22 21 8 45 45 H 1.09000 * 109.50486 * 179.11857 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 8 1.6599 -2.0978 1.1944 6 6 3.5660 -0.6141 1.3148 7 6 4.0651 -1.2857 2.5961 8 7 3.4597 -0.6294 3.7620 9 6 4.0212 -1.1562 5.0131 10 6 3.6842 -0.2055 6.1635 11 6 4.0997 1.2293 5.9639 12 1 3.3510 2.0054 5.9063 13 6 5.4360 1.5512 5.8549 14 7 5.7958 2.7932 5.6153 15 14 6.7351 0.2217 6.0398 16 1 7.0885 -0.3146 4.7009 17 1 7.9459 0.7981 6.6776 18 1 6.2035 -0.8753 6.8879 19 6 2.3909 -0.4651 6.9387 20 6 3.7450 -0.7674 7.5853 21 6 1.9973 -0.7606 3.7452 22 6 1.4364 -0.0732 2.4982 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5140 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8932 -0.5138 -0.8901 27 1 3.1300 1.4424 -0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.9494 -2.6164 1.9574 31 1 3.8572 0.4362 1.3173 32 1 4.0033 -1.1114 0.4490 33 1 5.1501 -1.1985 2.6529 34 1 3.7854 -2.3392 2.5865 35 1 5.1037 -1.2419 4.9178 36 1 3.5955 -2.1386 5.2171 37 1 6.7358 3.0197 5.5383 38 1 1.8407 0.4019 7.3043 39 1 1.7804 -1.3134 6.6294 40 1 4.0247 -1.8145 7.7010 41 1 4.0861 -0.0994 8.3762 42 1 1.7274 -1.8165 3.7302 43 1 1.5804 -0.2918 4.6367 44 1 1.6941 0.9857 2.5193 45 1 0.3523 -0.1842 2.4780 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710668888.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:54 Heat of formation + Delta-G solvation = -27.761974 kcal Electronic energy + Delta-G solvation = -22461.526727 eV Core-core repulsion = 19479.452292 eV Total energy + Delta-G solvation = -2982.074435 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.03247 -37.46996 -35.19962 -34.38937 -31.98090 -30.71272 -30.42215 -27.06820 -26.46119 -25.05355 -23.31032 -22.76972 -21.42090 -20.39183 -18.88039 -18.59135 -16.98101 -16.30354 -15.49792 -15.05103 -14.74182 -14.46585 -14.37043 -13.92417 -13.70084 -13.43308 -12.94398 -12.75618 -12.55938 -12.25004 -12.13638 -12.00547 -11.49292 -11.40086 -11.32016 -11.23477 -10.92655 -10.90680 -10.73237 -10.62772 -10.57734 -10.27150 -10.15298 -9.72179 -9.42638 -9.37950 -8.94710 -8.54035 -8.34706 -7.53368 -5.97397 -3.93715 3.31285 3.42378 3.46449 4.28657 4.35863 4.51562 4.80105 4.88670 5.00790 5.07391 5.29903 5.35033 5.42017 5.46858 5.50898 5.57316 5.67861 5.74093 5.82713 5.88555 5.92999 5.95502 6.00733 6.05161 6.10196 6.13878 6.15861 6.22831 6.29105 6.34115 6.38824 6.43892 6.49187 6.53951 6.63677 6.64918 6.75605 7.09182 7.15168 7.70263 7.77576 7.80410 7.92417 8.63773 9.05153 9.67401 11.15629 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.022787 B = 0.006539 C = 0.006086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.464417 B = 4281.226060 C = 4599.946632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.077 4.077 3 C -0.152 4.152 4 C 0.138 3.862 5 O -0.564 6.564 6 C -0.142 4.142 7 C 0.052 3.948 8 N -0.504 5.504 9 C 0.093 3.907 10 C 0.011 3.989 11 C -0.452 4.452 12 H 0.073 0.927 13 C 0.082 3.918 14 N -0.903 5.903 15 Si 0.869 3.131 16 H -0.283 1.283 17 H -0.297 1.297 18 H -0.255 1.255 19 C -0.188 4.188 20 C -0.197 4.197 21 C 0.058 3.942 22 C -0.142 4.142 23 H 0.058 0.942 24 H 0.048 0.952 25 H 0.058 0.942 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.370 0.630 31 H 0.089 0.911 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.019 0.981 35 H 0.061 0.939 36 H 0.011 0.989 37 H 0.261 0.739 38 H 0.083 0.917 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.086 0.914 42 H 0.015 0.985 43 H 0.089 0.911 44 H 0.087 0.913 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.221 -7.939 -8.598 13.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.096 4.096 3 C -0.209 4.209 4 C 0.098 3.902 5 O -0.371 6.371 6 C -0.180 4.180 7 C -0.077 4.077 8 N -0.228 5.228 9 C -0.034 4.034 10 C 0.010 3.990 11 C -0.489 4.489 12 H 0.092 0.908 13 C -0.120 4.120 14 N -0.541 5.541 15 Si 0.698 3.302 16 H -0.210 1.210 17 H -0.224 1.224 18 H -0.180 1.180 19 C -0.225 4.225 20 C -0.236 4.236 21 C -0.070 4.070 22 C -0.179 4.179 23 H 0.077 0.923 24 H 0.068 0.932 25 H 0.077 0.923 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.218 0.782 31 H 0.107 0.893 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.037 0.963 35 H 0.079 0.921 36 H 0.029 0.971 37 H 0.071 0.929 38 H 0.102 0.898 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.105 0.895 42 H 0.033 0.967 43 H 0.108 0.892 44 H 0.106 0.894 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.211 -7.118 -9.221 13.700 hybrid contribution 1.010 -1.739 0.714 2.134 sum -6.200 -8.857 -8.508 13.757 Atomic orbital electron populations 1.21838 0.95038 1.01962 1.01367 1.20972 0.96164 0.95741 0.96705 1.21987 1.01739 0.95032 1.02129 1.21233 0.92924 0.81247 0.94814 1.86443 1.81239 1.21058 1.48386 1.22316 0.95566 1.03265 0.96851 1.22101 0.99970 0.94422 0.91173 1.61617 1.03669 1.56655 1.00868 1.21812 0.98190 0.93587 0.89813 1.19389 0.96441 0.96163 0.87044 1.20068 0.92559 0.88390 1.47925 0.90849 1.24792 0.98183 0.94726 0.94250 1.69886 1.16601 1.17861 1.49748 0.87040 0.81449 0.83438 0.78306 1.20963 1.22378 1.17962 1.22815 0.90873 1.01266 1.07541 1.23074 1.01123 0.99242 1.00123 1.22106 0.88689 0.96953 0.99264 1.22340 0.99682 1.02148 0.93764 0.92327 0.93242 0.92284 0.91160 0.91893 0.92691 0.91695 0.78166 0.89265 0.91595 0.90858 0.96287 0.92102 0.97071 0.92941 0.89840 0.91449 0.91678 0.89543 0.96716 0.89222 0.89450 0.91221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 8.61 37.15 0.32 -1.34 16 2 C -0.08 -0.96 2.53 -90.62 -0.23 -1.19 16 3 C -0.15 -1.82 8.46 37.16 0.31 -1.51 16 4 C 0.14 1.90 0.58 -90.50 -0.05 1.85 16 5 O -0.56 -7.85 12.48 -35.23 -0.44 -8.29 16 6 C -0.14 -2.10 4.69 -26.65 -0.13 -2.23 16 7 C 0.05 0.85 5.21 -3.83 -0.02 0.83 16 8 N -0.50 -9.61 4.30 -234.67 -1.01 -10.62 16 9 C 0.09 1.92 4.44 -3.83 -0.02 1.90 16 10 C 0.01 0.25 0.59 -155.66 -0.09 0.16 16 11 C -0.45 -12.29 9.10 -34.44 -0.31 -12.61 16 12 H 0.07 2.21 8.06 -52.49 -0.42 1.79 16 13 C 0.08 2.30 5.47 -17.82 -0.10 2.21 16 14 N -0.90 -27.32 13.96 55.43 0.77 -26.54 16 15 Si 0.87 21.44 24.73 -169.99 -4.20 17.23 16 16 H -0.28 -6.89 7.09 56.52 0.40 -6.49 16 17 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 18 H -0.26 -5.94 5.91 56.52 0.33 -5.61 16 19 C -0.19 -3.71 8.34 -26.69 -0.22 -3.93 16 20 C -0.20 -4.12 8.38 -26.69 -0.22 -4.35 16 21 C 0.06 0.96 5.02 -3.83 -0.02 0.94 16 22 C -0.14 -2.10 4.34 -26.65 -0.12 -2.21 16 23 H 0.06 0.67 6.41 -51.93 -0.33 0.34 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.71 7.82 -51.93 -0.41 0.30 16 26 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.06 0.78 6.30 -51.93 -0.33 0.45 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.83 6.52 -51.93 -0.34 0.49 16 30 H 0.37 4.68 5.86 45.56 0.27 4.94 16 31 H 0.09 1.43 6.22 -51.93 -0.32 1.11 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.07 1.29 7.96 -51.93 -0.41 0.88 16 34 H 0.02 0.28 6.85 -51.93 -0.36 -0.07 16 35 H 0.06 1.33 4.52 -51.93 -0.23 1.09 16 36 H 0.01 0.21 8.00 -51.93 -0.42 -0.20 16 37 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 38 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 39 H 0.07 1.18 8.01 -51.93 -0.42 0.77 16 40 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16 42 H 0.01 0.22 6.84 -51.93 -0.36 -0.13 16 43 H 0.09 1.62 5.92 -51.93 -0.31 1.31 16 44 H 0.09 1.43 6.46 -51.93 -0.34 1.09 16 45 H 0.07 0.95 6.51 -51.93 -0.34 0.61 16 LS Contribution 324.89 15.07 4.90 4.90 Total: -1.00 -29.27 324.89 -8.09 -37.36 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -7.22 Total: 7.44 kcal Atomic # 6 Polarization: -20.58 SS G_CDS: -0.89 Total: -21.47 kcal Atomic # 7 Polarization: -36.93 SS G_CDS: -0.23 Total: -37.16 kcal Atomic # 8 Polarization: -7.85 SS G_CDS: -0.44 Total: -8.29 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.20 Total: 17.23 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.27 -8.09 -37.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710668888.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.596 kcal (2) G-P(sol) polarization free energy of solvation -29.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds