Wall clock time and date at job start Mon Mar 30 2020 06:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47324 * 2 1 4 4 C 1.52998 * 109.47403 * 120.00558 * 2 1 3 5 5 O 1.42902 * 109.52220 * 64.86784 * 4 2 1 6 6 C 1.53116 * 109.52582 * 184.99680 * 4 2 1 7 7 C 1.53033 * 109.28167 * 177.62197 * 6 4 2 8 8 N 1.46855 * 109.52248 * 300.82343 * 7 6 4 9 9 C 1.46900 * 110.99887 * 185.83578 * 8 7 6 10 10 C 1.52997 * 109.47098 * 163.98026 * 9 8 7 11 11 C 1.50705 * 115.55093 * 305.38957 * 10 9 8 12 12 H 1.07991 * 120.00421 * 116.08024 * 11 10 9 13 13 C 1.37884 * 119.99601 * 296.07598 * 11 10 9 14 14 N 1.31507 * 119.99828 * 176.66750 * 13 11 10 15 15 Si 1.86793 * 119.99978 * 356.94527 * 13 11 10 16 16 H 1.48504 * 109.47122 * 93.57849 * 15 13 11 17 17 H 1.48496 * 109.47155 * 213.57930 * 15 13 11 18 18 H 1.48502 * 109.47636 * 333.57958 * 15 13 11 19 19 C 1.53005 * 117.49786 * 91.05317 * 10 9 8 20 20 C 1.52999 * 117.50138 * 159.71250 * 10 9 8 21 21 C 1.46844 * 111.19630 * 61.74182 * 8 7 6 22 22 C 1.53042 * 109.52378 * 298.25358 * 21 8 7 23 23 H 1.09004 * 109.47259 * 299.99592 * 1 2 3 24 24 H 1.09001 * 109.47604 * 59.99162 * 1 2 3 25 25 H 1.09004 * 109.47292 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46550 * 240.00644 * 2 1 3 27 27 H 1.08998 * 109.46982 * 180.02562 * 3 2 1 28 28 H 1.08999 * 109.47001 * 300.00695 * 3 2 1 29 29 H 1.09004 * 109.46619 * 60.00016 * 3 2 1 30 30 H 0.96696 * 114.00051 * 180.12897 * 5 4 2 31 31 H 1.08998 * 109.50463 * 57.68022 * 6 4 2 32 32 H 1.09000 * 109.50232 * 297.56889 * 6 4 2 33 33 H 1.08997 * 109.46598 * 180.80678 * 7 6 4 34 34 H 1.09002 * 109.45529 * 60.83007 * 7 6 4 35 35 H 1.09004 * 109.47049 * 43.98453 * 9 8 7 36 36 H 1.08995 * 109.47194 * 283.98200 * 9 8 7 37 37 H 0.97002 * 120.00459 * 180.02562 * 14 13 11 38 38 H 1.08996 * 117.49756 * 215.00710 * 19 10 9 39 39 H 1.08999 * 117.49802 * 0.02562 * 19 10 9 40 40 H 1.09001 * 117.49662 * 359.97438 * 20 10 9 41 41 H 1.09002 * 117.49747 * 144.97432 * 20 10 9 42 42 H 1.08998 * 109.46693 * 58.27058 * 21 8 7 43 43 H 1.09000 * 109.45948 * 178.24647 * 21 8 7 44 44 H 1.08994 * 109.50707 * 299.24563 * 22 21 8 45 45 H 1.09000 * 109.50486 * 179.11857 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 8 1.6599 -2.0978 1.1944 6 6 3.5660 -0.6141 1.3148 7 6 4.0651 -1.2857 2.5961 8 7 3.4597 -0.6294 3.7620 9 6 4.0212 -1.1562 5.0131 10 6 3.6842 -0.2055 6.1635 11 6 4.0997 1.2293 5.9639 12 1 3.3510 2.0054 5.9063 13 6 5.4360 1.5512 5.8549 14 7 5.7958 2.7932 5.6153 15 14 6.7351 0.2217 6.0398 16 1 7.0885 -0.3146 4.7009 17 1 7.9459 0.7981 6.6776 18 1 6.2035 -0.8753 6.8879 19 6 2.3909 -0.4651 6.9387 20 6 3.7450 -0.7674 7.5853 21 6 1.9973 -0.7606 3.7452 22 6 1.4364 -0.0732 2.4982 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5140 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8932 -0.5138 -0.8901 27 1 3.1300 1.4424 -0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.9494 -2.6164 1.9574 31 1 3.8572 0.4362 1.3173 32 1 4.0033 -1.1114 0.4490 33 1 5.1501 -1.1985 2.6529 34 1 3.7854 -2.3392 2.5865 35 1 5.1037 -1.2419 4.9178 36 1 3.5955 -2.1386 5.2171 37 1 6.7358 3.0197 5.5383 38 1 1.8407 0.4019 7.3043 39 1 1.7804 -1.3134 6.6294 40 1 4.0247 -1.8145 7.7010 41 1 4.0861 -0.0994 8.3762 42 1 1.7274 -1.8165 3.7302 43 1 1.5804 -0.2918 4.6367 44 1 1.6941 0.9857 2.5193 45 1 0.3523 -0.1842 2.4780 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710668888.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:53 Heat of formation + Delta-G solvation = -47.691925 kcal Electronic energy + Delta-G solvation = -22462.390954 eV Core-core repulsion = 19479.452292 eV Total energy + Delta-G solvation = -2982.938662 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.23865 -39.01957 -36.59486 -35.43433 -34.12541 -31.95198 -31.68647 -28.26666 -27.93815 -26.78062 -24.59642 -24.07505 -23.02221 -21.57390 -20.75559 -19.70087 -18.30296 -18.05592 -16.89715 -16.60759 -16.08048 -15.93558 -15.53542 -15.33660 -15.10478 -14.77413 -14.72843 -14.14021 -13.82043 -13.64651 -13.46348 -13.08417 -12.95350 -12.84114 -12.67833 -12.58007 -12.38146 -12.23305 -12.10223 -11.99691 -11.90077 -11.72157 -11.65385 -11.34698 -10.95516 -10.77711 -10.59955 -10.41735 -10.19595 -8.91247 -8.16041 -6.15219 1.34422 1.40440 1.51304 2.44628 2.90732 3.20961 3.26232 3.44391 3.71398 3.78037 3.90090 4.11916 4.20423 4.27333 4.32088 4.38558 4.42283 4.43885 4.48281 4.52740 4.60048 4.68646 4.79019 4.83611 4.90544 4.91286 4.94880 4.98519 5.03589 5.11388 5.11526 5.13819 5.22407 5.28592 5.35242 5.40966 5.51898 5.53254 5.55410 5.81461 6.33016 6.42031 6.48690 6.76245 6.86835 7.49143 9.00921 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.022787 B = 0.006539 C = 0.006086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.464417 B = 4281.226060 C = 4599.946632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.076 4.076 3 C -0.150 4.150 4 C 0.146 3.854 5 O -0.564 6.564 6 C -0.139 4.139 7 C 0.052 3.948 8 N -0.534 5.534 9 C 0.099 3.901 10 C -0.017 4.017 11 C -0.442 4.442 12 H 0.024 0.976 13 C 0.025 3.975 14 N -0.956 5.956 15 Si 0.928 3.072 16 H -0.278 1.278 17 H -0.305 1.305 18 H -0.228 1.228 19 C -0.167 4.167 20 C -0.192 4.192 21 C 0.060 3.940 22 C -0.136 4.136 23 H 0.055 0.945 24 H 0.064 0.936 25 H 0.055 0.945 26 H 0.075 0.925 27 H 0.053 0.947 28 H 0.072 0.928 29 H 0.050 0.950 30 H 0.377 0.623 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.057 0.943 34 H 0.044 0.956 35 H 0.046 0.954 36 H 0.040 0.960 37 H 0.259 0.741 38 H 0.072 0.928 39 H 0.100 0.900 40 H 0.093 0.907 41 H 0.072 0.928 42 H 0.039 0.961 43 H 0.071 0.929 44 H 0.064 0.936 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.115 -11.012 -9.206 16.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.095 4.095 3 C -0.207 4.207 4 C 0.105 3.895 5 O -0.372 6.372 6 C -0.177 4.177 7 C -0.076 4.076 8 N -0.259 5.259 9 C -0.028 4.028 10 C -0.018 4.018 11 C -0.480 4.480 12 H 0.042 0.958 13 C -0.171 4.171 14 N -0.598 5.598 15 Si 0.755 3.245 16 H -0.205 1.205 17 H -0.233 1.233 18 H -0.150 1.150 19 C -0.204 4.204 20 C -0.230 4.230 21 C -0.067 4.067 22 C -0.174 4.174 23 H 0.074 0.926 24 H 0.083 0.917 25 H 0.074 0.926 26 H 0.094 0.906 27 H 0.072 0.928 28 H 0.091 0.909 29 H 0.069 0.931 30 H 0.226 0.774 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.075 0.925 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.068 0.932 38 H 0.091 0.909 39 H 0.118 0.882 40 H 0.112 0.888 41 H 0.091 0.909 42 H 0.057 0.943 43 H 0.089 0.911 44 H 0.083 0.917 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.132 -10.222 -9.822 16.343 hybrid contribution 1.183 -0.706 0.908 1.650 sum -6.949 -10.928 -8.914 15.722 Atomic orbital electron populations 1.21801 0.94076 1.01927 1.02015 1.20985 0.96947 0.95457 0.96106 1.21961 1.01185 0.95201 1.02327 1.21135 0.91993 0.81468 0.94858 1.86452 1.81182 1.20763 1.48821 1.22286 0.96547 1.02091 0.96733 1.22110 0.98947 0.95799 0.90749 1.61524 1.05150 1.58039 1.01164 1.21648 0.97584 0.94123 0.89490 1.19316 0.99376 0.94067 0.89025 1.20192 0.91359 0.90242 1.46220 0.95797 1.25554 1.00512 0.96602 0.94441 1.70051 1.16822 1.20349 1.52553 0.86080 0.78271 0.81373 0.78771 1.20471 1.23329 1.15022 1.22825 0.90334 1.01836 1.05364 1.23091 1.01582 1.00355 0.97964 1.22077 0.87258 0.98281 0.99118 1.22278 1.00504 1.00730 0.93859 0.92639 0.91733 0.92559 0.90650 0.92762 0.90913 0.93059 0.77409 0.91243 0.90056 0.92474 0.93765 0.93536 0.94248 0.93239 0.90933 0.88217 0.88825 0.90902 0.94284 0.91104 0.91746 0.89818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 8.61 71.98 0.62 -2.29 16 2 C -0.08 -1.75 2.53 -10.80 -0.03 -1.78 16 3 C -0.15 -3.49 8.46 71.98 0.61 -2.88 16 4 C 0.15 3.74 0.58 -10.71 -0.01 3.74 16 5 O -0.56 -13.88 12.48 -148.98 -1.86 -15.74 16 6 C -0.14 -3.92 4.69 30.64 0.14 -3.78 16 7 C 0.05 1.61 5.21 86.32 0.45 2.06 16 8 N -0.53 -19.66 4.30 -896.36 -3.85 -23.51 16 9 C 0.10 3.84 4.44 86.30 0.38 4.22 16 10 C -0.02 -0.73 0.59 -52.93 -0.03 -0.76 16 11 C -0.44 -24.72 9.10 25.60 0.23 -24.49 16 12 H 0.02 1.52 8.06 -2.92 -0.02 1.50 16 13 C 0.02 1.43 5.47 84.66 0.46 1.90 16 14 N -0.96 -60.46 13.96 21.45 0.30 -60.16 16 15 Si 0.93 44.54 24.73 68.60 1.70 46.23 16 16 H -0.28 -13.03 7.09 99.48 0.71 -12.33 16 17 H -0.31 -14.96 7.11 99.48 0.71 -14.26 16 18 H -0.23 -9.76 5.91 99.48 0.59 -9.17 16 19 C -0.17 -6.21 8.34 30.62 0.26 -5.95 16 20 C -0.19 -7.48 8.38 30.62 0.26 -7.23 16 21 C 0.06 1.88 5.02 86.33 0.43 2.31 16 22 C -0.14 -3.87 4.34 30.65 0.13 -3.74 16 23 H 0.05 1.17 6.41 -2.39 -0.02 1.15 16 24 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.06 1.20 7.82 -2.39 -0.02 1.18 16 26 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.05 1.34 6.30 -2.39 -0.02 1.33 16 28 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.05 1.32 6.52 -2.39 -0.02 1.31 16 30 H 0.38 8.05 5.86 -74.06 -0.43 7.62 16 31 H 0.07 2.24 6.22 -2.39 -0.01 2.23 16 32 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.06 1.95 7.96 -2.39 -0.02 1.93 16 34 H 0.04 1.16 6.85 -2.39 -0.02 1.14 16 35 H 0.05 1.92 4.52 -2.39 -0.01 1.91 16 36 H 0.04 1.30 8.00 -2.39 -0.02 1.28 16 37 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 38 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 39 H 0.10 3.09 8.01 -2.39 -0.02 3.07 16 40 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 41 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 42 H 0.04 1.03 6.84 -2.39 -0.02 1.02 16 43 H 0.07 2.47 5.92 -2.39 -0.01 2.45 16 44 H 0.06 2.14 6.46 -2.39 -0.02 2.12 16 45 H 0.08 2.13 6.51 -2.39 -0.02 2.12 16 Total: -1.00 -64.91 324.89 0.61 -64.30 By element: Atomic # 1 Polarization: 27.12 SS G_CDS: 0.41 Total: 27.53 kcal Atomic # 6 Polarization: -42.57 SS G_CDS: 3.92 Total: -38.66 kcal Atomic # 7 Polarization: -80.12 SS G_CDS: -3.55 Total: -83.67 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: -1.86 Total: -15.74 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 1.70 Total: 46.23 kcal Total: -64.91 0.61 -64.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710668888.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.610 kcal (2) G-P(sol) polarization free energy of solvation -64.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds