Wall clock time and date at job start Mon Mar 30 2020 06:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50701 * 120.00044 * 2 1 4 4 C 1.52994 * 109.47114 * 125.00142 * 3 2 1 5 5 O 1.42901 * 109.52236 * 300.12826 * 4 3 2 6 6 C 1.53117 * 109.52149 * 180.02562 * 4 3 2 7 7 C 1.53041 * 109.27832 * 182.44365 * 6 4 3 8 8 N 1.46841 * 109.52702 * 59.17778 * 7 6 4 9 9 C 1.46896 * 111.00407 * 174.16592 * 8 7 6 10 10 C 1.52996 * 109.47438 * 170.00191 * 9 8 7 11 11 C 1.52997 * 109.47131 * 179.97438 * 10 9 8 12 12 C 1.53006 * 109.47127 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47184 * 180.02562 * 12 11 10 14 14 H 1.08005 * 119.99819 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00046 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00192 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99979 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.47309 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47510 * 119.99847 * 17 15 13 20 20 H 1.48506 * 109.47246 * 239.99882 * 17 15 13 21 21 C 1.46853 * 111.19781 * 298.25931 * 8 7 6 22 22 C 1.53038 * 109.52187 * 61.74038 * 21 8 7 23 23 H 1.08001 * 119.99531 * 359.97438 * 1 2 3 24 24 H 1.08003 * 119.99697 * 180.02562 * 1 2 3 25 25 H 1.08001 * 120.00047 * 180.02562 * 2 1 3 26 26 H 1.08998 * 109.46831 * 4.99960 * 3 2 1 27 27 H 1.09001 * 109.46886 * 245.00681 * 3 2 1 28 28 H 0.96693 * 114.00024 * 59.87295 * 5 4 3 29 29 H 1.08996 * 109.50341 * 62.50199 * 6 4 3 30 30 H 1.08996 * 109.50401 * 302.38026 * 6 4 3 31 31 H 1.09006 * 109.46269 * 299.16283 * 7 6 4 32 32 H 1.08995 * 109.46472 * 179.20029 * 7 6 4 33 33 H 1.09000 * 109.47585 * 49.99397 * 9 8 7 34 34 H 1.09001 * 109.46551 * 289.99882 * 9 8 7 35 35 H 1.08996 * 109.47452 * 59.99844 * 10 9 8 36 36 H 1.09001 * 109.46997 * 299.99418 * 10 9 8 37 37 H 1.09001 * 109.47502 * 60.00153 * 11 10 9 38 38 H 1.09001 * 109.47289 * 299.99950 * 11 10 9 39 39 H 1.09001 * 109.47002 * 299.99574 * 12 11 10 40 40 H 1.08993 * 109.46955 * 60.00011 * 12 11 10 41 41 H 0.96996 * 120.00505 * 179.97438 * 16 15 13 42 42 H 1.09000 * 109.46527 * 181.75308 * 21 8 7 43 43 H 1.09000 * 109.46142 * 301.72549 * 21 8 7 44 44 H 1.09001 * 109.50415 * 180.87785 * 22 21 8 45 45 H 1.09005 * 109.50244 * 60.76266 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 8 2.3052 1.2023 2.4031 6 6 3.8009 2.6590 1.1830 7 6 4.8138 2.6562 2.3303 8 7 5.7444 1.5330 2.1607 9 6 6.8143 1.5793 3.1662 10 6 7.6134 0.2754 3.1211 11 6 8.7282 0.3240 4.1679 12 6 9.5270 -0.9803 4.1232 13 6 10.6245 -0.9327 5.1548 14 1 10.7410 -0.0594 5.7795 15 6 11.4806 -2.0036 5.3003 16 7 11.3391 -3.0668 4.5393 17 14 12.8416 -1.9444 6.5785 18 1 12.7877 -0.6471 7.2992 19 1 12.6610 -3.0564 7.5459 20 1 14.1585 -2.0822 5.9061 21 6 5.0375 0.2466 2.2035 22 6 4.0313 0.1774 1.0524 23 1 -0.5399 0.9354 0.0004 24 1 -0.5400 -0.9354 0.0004 25 1 1.8501 -0.9353 -0.0004 26 1 1.3586 2.1316 0.0896 27 1 2.6213 1.4026 -0.9315 28 1 1.7953 0.3835 2.4709 29 1 3.1008 3.4834 1.3177 30 1 4.3254 2.7773 0.2349 31 1 4.2875 2.5516 3.2792 32 1 5.3706 3.5931 2.3255 33 1 6.3769 1.7033 4.1569 34 1 7.4764 2.4188 2.9537 35 1 8.0510 0.1515 2.1305 36 1 6.9514 -0.5640 3.3335 37 1 8.2911 0.4481 5.1587 38 1 9.3902 1.1634 3.9551 39 1 8.8647 -1.8194 4.3364 40 1 9.9640 -1.1048 3.1326 41 1 11.9416 -3.8201 4.6414 42 1 5.7568 -0.5666 2.1063 43 1 4.5101 0.1534 3.1529 44 1 3.4958 -0.7711 1.0936 45 1 4.5595 0.2567 0.1022 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717447071.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:26 Heat of formation + Delta-G solvation = -55.164907 kcal Electronic energy + Delta-G solvation = -20557.490248 eV Core-core repulsion = 17574.227533 eV Total energy + Delta-G solvation = -2983.262715 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.03489 -37.22579 -34.59355 -34.33982 -32.74834 -31.43849 -30.97429 -28.75442 -26.93892 -24.39762 -23.66445 -22.58702 -20.87101 -20.01893 -19.90000 -19.67067 -16.71486 -16.19121 -16.17885 -15.57842 -15.09682 -14.67173 -14.55436 -14.46256 -14.23323 -14.08455 -13.51134 -12.87293 -12.59514 -12.37844 -12.14111 -11.99587 -11.77708 -11.58655 -11.51863 -11.35708 -11.23355 -11.10545 -10.96128 -10.49671 -10.47248 -10.40421 -10.34166 -9.93503 -9.59665 -9.50114 -9.21657 -8.96813 -8.31190 -8.12961 -5.96077 -3.97981 1.89404 3.33132 3.40369 3.44905 3.93604 4.13337 4.38098 4.49411 4.55632 4.69560 4.81424 4.89345 5.12948 5.24037 5.33643 5.39435 5.40373 5.46756 5.50829 5.53745 5.60158 5.60825 5.72767 5.82639 5.92324 5.95613 5.97016 6.02675 6.14571 6.25390 6.28251 6.34749 6.39072 6.54527 6.85322 6.99306 7.15169 7.24886 7.31878 7.48856 7.73503 7.89342 8.05274 8.48527 9.09772 9.65840 11.15381 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.039404 B = 0.002894 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.425044 B = 9671.782098 C =10094.934757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.161 4.161 3 C -0.120 4.120 4 C 0.137 3.863 5 O -0.556 6.556 6 C -0.100 4.100 7 C 0.058 3.942 8 N -0.539 5.539 9 C 0.057 3.943 10 C -0.120 4.120 11 C -0.109 4.109 12 C 0.021 3.979 13 C -0.518 4.518 14 H 0.055 0.945 15 C 0.055 3.945 16 N -0.897 5.897 17 Si 0.891 3.109 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.051 3.949 22 C -0.141 4.141 23 H 0.095 0.905 24 H 0.097 0.903 25 H 0.112 0.888 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.372 0.628 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.040 0.960 32 H 0.071 0.929 33 H 0.030 0.970 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.044 0.956 38 H 0.047 0.953 39 H 0.014 0.986 40 H 0.015 0.985 41 H 0.259 0.741 42 H 0.086 0.914 43 H 0.037 0.963 44 H 0.068 0.932 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.093 8.896 -9.782 24.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.179 4.179 3 C -0.157 4.157 4 C 0.096 3.904 5 O -0.362 6.362 6 C -0.137 4.137 7 C -0.070 4.070 8 N -0.264 5.264 9 C -0.070 4.070 10 C -0.158 4.158 11 C -0.147 4.147 12 C -0.016 4.016 13 C -0.557 4.557 14 H 0.073 0.927 15 C -0.146 4.146 16 N -0.536 5.536 17 Si 0.719 3.281 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.210 1.210 21 C -0.077 4.077 22 C -0.179 4.179 23 H 0.114 0.886 24 H 0.115 0.885 25 H 0.130 0.870 26 H 0.091 0.909 27 H 0.100 0.900 28 H 0.219 0.781 29 H 0.088 0.912 30 H 0.101 0.899 31 H 0.058 0.942 32 H 0.089 0.911 33 H 0.048 0.952 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.032 0.968 40 H 0.034 0.966 41 H 0.069 0.931 42 H 0.104 0.896 43 H 0.055 0.945 44 H 0.087 0.913 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -20.527 9.369 -10.155 24.744 hybrid contribution 0.136 -0.788 1.299 1.525 sum -20.391 8.582 -8.857 23.830 Atomic orbital electron populations 1.23909 0.95953 1.01874 1.00819 1.23024 0.96078 0.98615 1.00197 1.21468 0.98870 0.95882 0.99472 1.21197 0.89806 0.95952 0.83435 1.86531 1.65734 1.45084 1.38821 1.21573 0.96841 0.95299 1.00029 1.21976 0.93299 0.94462 0.97310 1.62052 1.12088 1.02264 1.49986 1.22209 0.92677 0.99888 0.92249 1.21812 0.97685 0.95395 1.00897 1.21598 0.95771 1.00978 0.96376 1.19093 0.94253 0.91249 0.97004 1.21333 1.13766 1.01600 1.18957 0.92717 1.25036 0.97793 0.95578 0.96186 1.69975 1.38309 1.05925 1.39420 0.86558 0.82031 0.77963 0.81580 1.19766 1.21053 1.21030 1.22131 0.95822 0.92736 0.96978 1.22309 0.97176 0.97945 1.00468 0.88623 0.88462 0.87015 0.90875 0.89962 0.78067 0.91159 0.89923 0.94179 0.91053 0.95201 0.90937 0.91701 0.92362 0.93688 0.93408 0.96799 0.96630 0.93128 0.89567 0.94510 0.91347 0.90231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.23 14.32 29.01 0.42 -0.82 16 2 C -0.16 -1.14 7.91 -36.03 -0.29 -1.42 16 3 C -0.12 -0.91 4.94 -27.89 -0.14 -1.05 16 4 C 0.14 1.28 0.73 -90.50 -0.07 1.21 16 5 O -0.56 -5.81 11.82 -35.23 -0.42 -6.23 16 6 C -0.10 -0.99 5.11 -26.65 -0.14 -1.13 16 7 C 0.06 0.69 5.29 -3.84 -0.02 0.67 16 8 N -0.54 -7.33 4.81 -234.67 -1.13 -8.46 16 9 C 0.06 0.86 5.27 -3.83 -0.02 0.84 16 10 C -0.12 -2.11 4.46 -26.73 -0.12 -2.23 16 11 C -0.11 -2.31 5.15 -26.73 -0.14 -2.44 16 12 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 13 C -0.52 -15.06 9.11 -34.44 -0.31 -15.38 16 14 H 0.05 1.55 7.74 -52.48 -0.41 1.14 16 15 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -27.47 13.29 55.43 0.74 -26.74 16 17 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 18 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 21 C 0.05 0.66 4.72 -3.83 -0.02 0.64 16 22 C -0.14 -1.42 4.77 -26.65 -0.13 -1.55 16 23 H 0.10 0.60 7.84 -52.49 -0.41 0.19 16 24 H 0.10 0.55 8.06 -52.48 -0.42 0.12 16 25 H 0.11 0.75 6.88 -52.49 -0.36 0.39 16 26 H 0.07 0.56 7.79 -51.93 -0.40 0.16 16 27 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.37 2.98 8.09 45.56 0.37 3.35 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.04 0.53 7.76 -51.93 -0.40 0.13 16 32 H 0.07 0.80 8.12 -51.93 -0.42 0.38 16 33 H 0.03 0.46 8.08 -51.93 -0.42 0.04 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.06 1.02 6.21 -51.93 -0.32 0.70 16 37 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 42 H 0.09 1.20 5.81 -51.93 -0.30 0.90 16 43 H 0.04 0.51 7.76 -51.93 -0.40 0.10 16 44 H 0.07 0.60 6.67 -51.93 -0.35 0.25 16 45 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 349.54 15.07 5.27 5.27 Total: -1.00 -31.21 349.54 -9.38 -40.59 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -7.62 Total: -0.72 kcal Atomic # 6 Polarization: -19.53 SS G_CDS: -1.20 Total: -20.73 kcal Atomic # 7 Polarization: -34.81 SS G_CDS: -0.39 Total: -35.20 kcal Atomic # 8 Polarization: -5.81 SS G_CDS: -0.42 Total: -6.23 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.21 -9.38 -40.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717447071.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.577 kcal (2) G-P(sol) polarization free energy of solvation -31.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds