Wall clock time and date at job start Mon Mar 30 2020 06:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50701 * 120.00044 * 2 1 4 4 C 1.52994 * 109.47114 * 125.00142 * 3 2 1 5 5 O 1.42901 * 109.52236 * 300.12826 * 4 3 2 6 6 C 1.53117 * 109.52149 * 180.02562 * 4 3 2 7 7 C 1.53041 * 109.27832 * 182.44365 * 6 4 3 8 8 N 1.46841 * 109.52702 * 59.17778 * 7 6 4 9 9 C 1.46896 * 111.00407 * 174.16592 * 8 7 6 10 10 C 1.52996 * 109.47438 * 170.00191 * 9 8 7 11 11 C 1.52997 * 109.47131 * 179.97438 * 10 9 8 12 12 C 1.53006 * 109.47127 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47184 * 180.02562 * 12 11 10 14 14 H 1.08005 * 119.99819 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00046 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00192 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99979 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.47309 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47510 * 119.99847 * 17 15 13 20 20 H 1.48506 * 109.47246 * 239.99882 * 17 15 13 21 21 C 1.46853 * 111.19781 * 298.25931 * 8 7 6 22 22 C 1.53038 * 109.52187 * 61.74038 * 21 8 7 23 23 H 1.08001 * 119.99531 * 359.97438 * 1 2 3 24 24 H 1.08003 * 119.99697 * 180.02562 * 1 2 3 25 25 H 1.08001 * 120.00047 * 180.02562 * 2 1 3 26 26 H 1.08998 * 109.46831 * 4.99960 * 3 2 1 27 27 H 1.09001 * 109.46886 * 245.00681 * 3 2 1 28 28 H 0.96693 * 114.00024 * 59.87295 * 5 4 3 29 29 H 1.08996 * 109.50341 * 62.50199 * 6 4 3 30 30 H 1.08996 * 109.50401 * 302.38026 * 6 4 3 31 31 H 1.09006 * 109.46269 * 299.16283 * 7 6 4 32 32 H 1.08995 * 109.46472 * 179.20029 * 7 6 4 33 33 H 1.09000 * 109.47585 * 49.99397 * 9 8 7 34 34 H 1.09001 * 109.46551 * 289.99882 * 9 8 7 35 35 H 1.08996 * 109.47452 * 59.99844 * 10 9 8 36 36 H 1.09001 * 109.46997 * 299.99418 * 10 9 8 37 37 H 1.09001 * 109.47502 * 60.00153 * 11 10 9 38 38 H 1.09001 * 109.47289 * 299.99950 * 11 10 9 39 39 H 1.09001 * 109.47002 * 299.99574 * 12 11 10 40 40 H 1.08993 * 109.46955 * 60.00011 * 12 11 10 41 41 H 0.96996 * 120.00505 * 179.97438 * 16 15 13 42 42 H 1.09000 * 109.46527 * 181.75308 * 21 8 7 43 43 H 1.09000 * 109.46142 * 301.72549 * 21 8 7 44 44 H 1.09001 * 109.50415 * 180.87785 * 22 21 8 45 45 H 1.09005 * 109.50244 * 60.76266 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 8 2.3052 1.2023 2.4031 6 6 3.8009 2.6590 1.1830 7 6 4.8138 2.6562 2.3303 8 7 5.7444 1.5330 2.1607 9 6 6.8143 1.5793 3.1662 10 6 7.6134 0.2754 3.1211 11 6 8.7282 0.3240 4.1679 12 6 9.5270 -0.9803 4.1232 13 6 10.6245 -0.9327 5.1548 14 1 10.7410 -0.0594 5.7795 15 6 11.4806 -2.0036 5.3003 16 7 11.3391 -3.0668 4.5393 17 14 12.8416 -1.9444 6.5785 18 1 12.7877 -0.6471 7.2992 19 1 12.6610 -3.0564 7.5459 20 1 14.1585 -2.0822 5.9061 21 6 5.0375 0.2466 2.2035 22 6 4.0313 0.1774 1.0524 23 1 -0.5399 0.9354 0.0004 24 1 -0.5400 -0.9354 0.0004 25 1 1.8501 -0.9353 -0.0004 26 1 1.3586 2.1316 0.0896 27 1 2.6213 1.4026 -0.9315 28 1 1.7953 0.3835 2.4709 29 1 3.1008 3.4834 1.3177 30 1 4.3254 2.7773 0.2349 31 1 4.2875 2.5516 3.2792 32 1 5.3706 3.5931 2.3255 33 1 6.3769 1.7033 4.1569 34 1 7.4764 2.4188 2.9537 35 1 8.0510 0.1515 2.1305 36 1 6.9514 -0.5640 3.3335 37 1 8.2911 0.4481 5.1587 38 1 9.3902 1.1634 3.9551 39 1 8.8647 -1.8194 4.3364 40 1 9.9640 -1.1048 3.1326 41 1 11.9416 -3.8201 4.6414 42 1 5.7568 -0.5666 2.1063 43 1 4.5101 0.1534 3.1529 44 1 3.4958 -0.7711 1.0936 45 1 4.5595 0.2567 0.1022 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717447071.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:25 Heat of formation + Delta-G solvation = -75.249520 kcal Electronic energy + Delta-G solvation = -20558.361182 eV Core-core repulsion = 17574.227533 eV Total energy + Delta-G solvation = -2984.133649 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.89418 -38.26827 -36.23356 -35.00805 -34.47256 -32.74597 -31.88676 -30.18888 -28.11940 -26.05468 -24.62728 -23.74923 -22.36665 -21.39661 -20.80913 -20.38536 -18.42900 -17.51875 -17.15061 -16.51206 -16.46023 -16.11696 -15.79784 -15.46787 -15.16597 -15.03663 -14.47877 -14.37205 -13.98032 -13.73229 -13.37664 -13.32536 -12.93441 -12.74013 -12.68105 -12.53480 -12.32615 -12.27817 -12.13379 -12.08775 -12.02964 -11.92223 -11.36630 -11.30041 -11.13031 -10.98103 -10.72460 -10.56528 -10.11738 -9.23394 -8.20659 -6.31995 1.38375 1.39068 1.39492 1.53104 2.40360 2.93644 3.12052 3.36232 3.69834 3.79232 3.90984 4.00543 4.12735 4.23589 4.29788 4.32310 4.46367 4.47660 4.52267 4.60453 4.69173 4.73342 4.80709 4.83394 4.88965 4.95010 4.97811 5.05680 5.10934 5.13700 5.19661 5.23517 5.27973 5.31848 5.35995 5.53651 5.76443 5.76864 5.85842 5.87438 6.12998 6.19882 6.26138 6.83353 6.85432 7.37303 8.91512 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.039404 B = 0.002894 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.425044 B = 9671.782098 C =10094.934757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.170 4.170 3 C -0.112 4.112 4 C 0.139 3.861 5 O -0.571 6.571 6 C -0.100 4.100 7 C 0.058 3.942 8 N -0.542 5.542 9 C 0.065 3.935 10 C -0.108 4.108 11 C -0.097 4.097 12 C 0.024 3.976 13 C -0.544 4.544 14 H 0.059 0.941 15 C -0.003 4.003 16 N -0.934 5.934 17 Si 0.966 3.034 18 H -0.262 1.262 19 H -0.277 1.277 20 H -0.277 1.277 21 C 0.050 3.950 22 C -0.136 4.136 23 H 0.098 0.902 24 H 0.106 0.894 25 H 0.114 0.886 26 H 0.074 0.926 27 H 0.088 0.912 28 H 0.381 0.619 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.025 0.975 32 H 0.079 0.921 33 H 0.027 0.973 34 H 0.079 0.921 35 H 0.058 0.942 36 H 0.054 0.946 37 H 0.047 0.953 38 H 0.052 0.948 39 H -0.011 1.011 40 H -0.009 1.009 41 H 0.264 0.736 42 H 0.071 0.929 43 H 0.025 0.975 44 H 0.082 0.918 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.689 9.880 -9.828 25.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.188 4.188 3 C -0.149 4.149 4 C 0.099 3.901 5 O -0.379 6.379 6 C -0.137 4.137 7 C -0.070 4.070 8 N -0.267 5.267 9 C -0.062 4.062 10 C -0.145 4.145 11 C -0.135 4.135 12 C -0.013 4.013 13 C -0.582 4.582 14 H 0.077 0.923 15 C -0.201 4.201 16 N -0.575 5.575 17 Si 0.791 3.209 18 H -0.186 1.186 19 H -0.203 1.203 20 H -0.202 1.202 21 C -0.078 4.078 22 C -0.174 4.174 23 H 0.116 0.884 24 H 0.124 0.876 25 H 0.132 0.868 26 H 0.093 0.907 27 H 0.106 0.894 28 H 0.230 0.770 29 H 0.099 0.901 30 H 0.109 0.891 31 H 0.044 0.956 32 H 0.097 0.903 33 H 0.046 0.954 34 H 0.098 0.902 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.007 0.993 40 H 0.009 0.991 41 H 0.073 0.927 42 H 0.089 0.911 43 H 0.043 0.957 44 H 0.100 0.900 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -21.142 10.361 -10.207 25.661 hybrid contribution 0.286 -1.125 1.300 1.743 sum -20.855 9.236 -8.907 24.486 Atomic orbital electron populations 1.24040 0.95883 1.02463 0.99831 1.23025 0.96292 0.98434 1.01068 1.21372 0.98488 0.96314 0.98740 1.21183 0.89902 0.95158 0.83891 1.86506 1.65999 1.45876 1.39487 1.21606 0.96579 0.96089 0.99434 1.22031 0.93384 0.94000 0.97596 1.62084 1.12373 1.03133 1.49069 1.22039 0.93113 0.98306 0.92769 1.21625 0.96719 0.96995 0.99196 1.21406 0.96280 0.98055 0.97750 1.19010 0.94009 0.93170 0.95106 1.21764 1.14720 1.02019 1.19664 0.92274 1.26019 1.00542 0.95038 0.98455 1.70104 1.39540 1.06719 1.41110 0.85380 0.78438 0.78489 0.78623 1.18609 1.20280 1.20226 1.22131 0.95953 0.91970 0.97731 1.22285 0.96748 0.99219 0.99101 0.88382 0.87602 0.86774 0.90705 0.89364 0.77001 0.90134 0.89088 0.95631 0.90252 0.95430 0.90231 0.92307 0.92704 0.93454 0.92893 0.99309 0.99101 0.92749 0.91104 0.95672 0.89998 0.90085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.07 14.32 67.77 0.97 -1.10 16 2 C -0.17 -2.08 7.91 25.64 0.20 -1.88 16 3 C -0.11 -1.48 4.94 29.85 0.15 -1.34 16 4 C 0.14 2.39 0.73 -10.72 -0.01 2.38 16 5 O -0.57 -11.21 11.82 -148.98 -1.76 -12.97 16 6 C -0.10 -1.80 5.11 30.65 0.16 -1.64 16 7 C 0.06 1.31 5.29 86.33 0.46 1.77 16 8 N -0.54 -14.34 4.81 -896.37 -4.31 -18.64 16 9 C 0.07 1.94 5.27 86.30 0.46 2.39 16 10 C -0.11 -3.82 4.46 30.59 0.14 -3.69 16 11 C -0.10 -4.13 5.15 30.60 0.16 -3.97 16 12 C 0.02 1.32 4.97 29.85 0.15 1.47 16 13 C -0.54 -31.96 9.11 25.60 0.23 -31.73 16 14 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 15 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 16 N -0.93 -58.13 13.29 21.45 0.28 -57.84 16 17 Si 0.97 45.15 29.54 68.60 2.03 47.17 16 18 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 19 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 20 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 21 C 0.05 1.28 4.72 86.32 0.41 1.68 16 22 C -0.14 -2.58 4.77 30.65 0.15 -2.44 16 23 H 0.10 1.04 7.84 -2.91 -0.02 1.02 16 24 H 0.11 0.99 8.06 -2.91 -0.02 0.96 16 25 H 0.11 1.33 6.88 -2.91 -0.02 1.31 16 26 H 0.07 0.99 7.79 -2.39 -0.02 0.97 16 27 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.38 5.64 8.09 -74.06 -0.60 5.04 16 29 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.03 0.66 7.76 -2.38 -0.02 0.64 16 32 H 0.08 1.66 8.12 -2.39 -0.02 1.64 16 33 H 0.03 0.83 8.08 -2.39 -0.02 0.81 16 34 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.05 1.97 6.21 -2.39 -0.01 1.96 16 37 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 39 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 40 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 41 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 42 H 0.07 2.00 5.81 -2.39 -0.01 1.99 16 43 H 0.02 0.69 7.76 -2.39 -0.02 0.68 16 44 H 0.08 1.33 6.67 -2.39 -0.02 1.31 16 45 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 Total: -1.00 -66.65 349.54 0.64 -66.00 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: 0.33 Total: 14.10 kcal Atomic # 6 Polarization: -41.88 SS G_CDS: 4.07 Total: -37.81 kcal Atomic # 7 Polarization: -72.47 SS G_CDS: -4.02 Total: -76.49 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: -1.76 Total: -12.97 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Total: -66.65 0.64 -66.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717447071.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.248 kcal (2) G-P(sol) polarization free energy of solvation -66.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds