Wall clock time and date at job start Mon Mar 30 2020 09:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47509 * 2 1 4 4 C 1.52996 * 109.47151 * 239.99952 * 2 1 3 5 5 C 1.50704 * 109.47071 * 119.99856 * 2 1 3 6 6 O 1.20754 * 119.99738 * 0.02562 * 5 2 1 7 7 C 1.50701 * 119.99573 * 179.97438 * 5 2 1 8 8 C 1.53000 * 109.46759 * 180.02562 * 7 5 2 9 9 N 1.46504 * 109.47377 * 180.02562 * 8 7 5 10 10 C 1.36935 * 119.99618 * 269.99942 * 9 8 7 11 11 H 1.08000 * 119.99686 * 141.59442 * 10 9 8 12 12 C 1.38811 * 120.00526 * 321.59498 * 10 9 8 13 13 N 1.31623 * 119.99525 * 339.27261 * 12 10 9 14 14 Si 1.86792 * 120.00417 * 159.27568 * 12 10 9 15 15 H 1.48495 * 109.47394 * 59.99955 * 14 12 10 16 16 H 1.48497 * 109.47611 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.47131 * 299.99775 * 14 12 10 18 18 C 1.46497 * 120.00145 * 89.99916 * 9 8 7 19 19 C 1.54269 * 110.03222 * 242.55195 * 18 9 8 20 20 C 1.54963 * 104.16166 * 217.13650 * 19 18 9 21 21 C 1.54897 * 102.77547 * 37.88268 * 20 19 18 22 22 C 1.53870 * 110.03642 * 125.33395 * 18 9 8 23 23 H 1.09002 * 109.47300 * 300.00048 * 1 2 3 24 24 H 1.09003 * 109.46741 * 59.99716 * 1 2 3 25 25 H 1.08992 * 109.47138 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47428 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.46515 * 300.00280 * 3 2 1 28 28 H 1.09002 * 109.46879 * 59.99693 * 3 2 1 29 29 H 1.08999 * 109.47334 * 300.00183 * 4 2 1 30 30 H 1.09007 * 109.47410 * 60.00208 * 4 2 1 31 31 H 1.09008 * 109.47327 * 180.02562 * 4 2 1 32 32 H 1.09002 * 109.47027 * 60.00712 * 7 5 2 33 33 H 1.09000 * 109.47807 * 299.99870 * 7 5 2 34 34 H 1.08997 * 109.47217 * 59.99742 * 8 7 5 35 35 H 1.09009 * 109.47240 * 300.00187 * 8 7 5 36 36 H 0.97003 * 119.99804 * 175.02194 * 13 12 10 37 37 H 1.09006 * 110.01526 * 3.94025 * 18 9 8 38 38 H 1.09005 * 110.48467 * 335.78077 * 19 18 9 39 39 H 1.09001 * 110.48702 * 98.42591 * 19 18 9 40 40 H 1.09005 * 110.71856 * 279.57933 * 20 19 18 41 41 H 1.08993 * 110.92672 * 156.29493 * 20 19 18 42 42 H 1.08994 * 110.48732 * 203.40501 * 21 20 19 43 43 H 1.08998 * 110.59105 * 80.81953 * 21 20 19 44 44 H 1.08996 * 110.03529 * 238.57267 * 22 18 9 45 45 H 1.09008 * 110.02999 * 359.97438 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 2.0323 -0.7104 1.2305 6 8 1.2475 -1.1697 2.0251 7 6 3.5139 -0.8485 1.4686 8 6 3.7518 -1.6047 2.7773 9 7 5.1921 -1.7385 3.0092 10 6 5.8653 -2.8279 2.5243 11 1 6.8610 -2.7123 2.1223 12 6 5.2681 -4.0807 2.5494 13 7 4.2704 -4.3176 3.3746 14 14 5.8802 -5.4303 1.4123 15 1 7.3102 -5.7089 1.6995 16 1 5.0815 -6.6628 1.6318 17 1 5.7350 -4.9919 0.0008 18 6 5.9122 -0.7069 3.7599 19 6 6.9759 -0.0442 2.8602 20 6 8.1718 0.2109 3.8120 21 6 8.1648 -1.0470 4.7158 22 6 6.6676 -1.3438 4.9394 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 3.1301 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9564 0.8900 29 1 1.6766 -1.7489 -1.2492 30 1 1.6766 -0.2074 -2.1393 31 1 3.1300 -0.7217 -1.2490 32 1 3.9654 0.1415 1.5334 33 1 3.9648 -1.4002 0.6437 34 1 3.3003 -2.5946 2.7122 35 1 3.3009 -1.0534 3.6026 36 1 3.8058 -5.1685 3.3422 37 1 5.2127 0.0444 4.1265 38 1 7.2670 -0.7178 2.0542 39 1 6.6014 0.8963 2.4562 40 1 8.0087 1.1121 4.4032 41 1 9.1055 0.2805 3.2540 42 1 8.6581 -0.8377 5.6649 43 1 8.6485 -1.8838 4.2119 44 1 6.3354 -0.9011 5.8783 45 1 6.4981 -2.4206 4.9536 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000753723001.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 09:18:44 Heat of formation + Delta-G solvation = -48.013578 kcal Electronic energy + Delta-G solvation = -21790.514241 eV Core-core repulsion = 18807.561630 eV Total energy + Delta-G solvation = -2982.952610 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.55738 -37.66169 -35.44435 -34.42902 -31.44794 -29.87985 -27.79885 -27.26281 -27.10362 -26.40772 -24.76605 -22.58347 -20.58365 -19.91224 -18.98680 -17.84801 -16.39454 -15.61363 -15.22362 -14.92727 -14.75812 -14.55789 -14.15672 -13.65402 -13.58493 -13.04149 -12.77873 -12.52940 -12.23398 -12.10165 -11.99500 -11.88369 -11.62744 -11.52872 -11.06869 -10.93077 -10.82161 -10.77823 -10.61769 -10.50256 -10.39570 -10.26507 -10.16370 -10.10206 -9.66384 -9.56794 -9.45559 -8.82853 -8.38961 -6.51248 -5.68875 -3.34589 2.55395 3.38088 3.45423 3.45908 4.36605 4.54076 4.87046 4.99291 5.16843 5.32816 5.42508 5.46401 5.54504 5.62183 5.64933 5.75422 5.81055 5.87456 5.91191 5.94975 6.03639 6.10179 6.15794 6.19820 6.26541 6.29594 6.33080 6.35570 6.39764 6.46551 6.58247 6.62546 6.67387 6.80382 6.89057 7.05996 7.11915 7.22677 7.45510 7.80796 7.89701 8.11418 8.58957 9.25667 9.88194 10.47217 11.26166 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.014626 B = 0.007004 C = 0.005474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.946356 B = 3996.531756 C = 5113.741288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.121 4.121 3 C -0.134 4.134 4 C -0.136 4.136 5 C 0.365 3.635 6 O -0.453 6.453 7 C -0.185 4.185 8 C 0.157 3.843 9 N -0.577 5.577 10 C -0.253 4.253 11 H 0.060 0.940 12 C 0.013 3.987 13 N -0.880 5.880 14 Si 0.888 3.112 15 H -0.281 1.281 16 H -0.291 1.291 17 H -0.284 1.284 18 C 0.169 3.831 19 C -0.135 4.135 20 C -0.123 4.123 21 C -0.117 4.117 22 C -0.131 4.131 23 H 0.057 0.943 24 H 0.054 0.946 25 H 0.058 0.942 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.025 0.975 36 H 0.254 0.746 37 H 0.045 0.955 38 H 0.073 0.927 39 H 0.045 0.955 40 H 0.054 0.946 41 H 0.051 0.949 42 H 0.046 0.954 43 H 0.061 0.939 44 H 0.039 0.961 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.920 10.405 -5.785 11.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.122 4.122 3 C -0.192 4.192 4 C -0.194 4.194 5 C 0.239 3.761 6 O -0.326 6.326 7 C -0.225 4.225 8 C 0.031 3.969 9 N -0.296 5.296 10 C -0.382 4.382 11 H 0.078 0.922 12 C -0.187 4.187 13 N -0.522 5.522 14 Si 0.717 3.283 15 H -0.208 1.208 16 H -0.217 1.217 17 H -0.210 1.210 18 C 0.062 3.938 19 C -0.174 4.174 20 C -0.161 4.161 21 C -0.155 4.155 22 C -0.170 4.170 23 H 0.076 0.924 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.111 0.889 34 H 0.115 0.885 35 H 0.044 0.956 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.092 0.908 39 H 0.063 0.937 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.065 0.935 43 H 0.080 0.920 44 H 0.058 0.942 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.415 9.955 -5.241 11.339 hybrid contribution 0.322 -0.685 -0.747 1.063 sum -1.093 9.270 -5.988 11.089 Atomic orbital electron populations 1.21690 0.93376 1.02393 1.01423 1.21259 0.97166 0.97197 0.96615 1.21786 1.01728 0.93685 1.01984 1.21798 1.01909 1.00209 0.95447 1.24827 0.92308 0.74598 0.84346 1.90346 1.59399 1.38195 1.44640 1.22793 0.92133 1.02615 1.04940 1.20717 0.85195 1.00858 0.90166 1.43940 1.04001 1.21220 1.60431 1.18845 1.01073 0.84810 1.33519 0.92217 1.25178 0.99295 0.96759 0.97508 1.70068 1.24377 1.23733 1.33993 0.86616 0.78443 0.81787 0.81427 1.20750 1.21731 1.21005 1.21061 0.92202 0.90418 0.90156 1.22864 0.96112 0.99343 0.99106 1.22438 0.98138 0.97575 0.97924 1.22250 0.97826 0.97393 0.98047 1.22538 0.93575 1.03496 0.97425 0.92386 0.92651 0.92266 0.91614 0.92069 0.92537 0.92345 0.92107 0.91471 0.90428 0.88853 0.88471 0.95613 0.93617 0.93638 0.90831 0.93652 0.92767 0.92997 0.93514 0.92023 0.94208 0.89583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.70 7.76 37.16 0.29 -1.41 16 2 C -0.12 -1.65 0.87 -155.66 -0.14 -1.78 16 3 C -0.13 -1.52 8.26 37.16 0.31 -1.21 16 4 C -0.14 -1.68 8.25 37.16 0.31 -1.37 16 5 C 0.37 6.51 5.97 -29.03 -0.17 6.34 16 6 O -0.45 -9.65 15.60 6.00 0.09 -9.55 16 7 C -0.18 -3.51 5.30 -27.88 -0.15 -3.65 16 8 C 0.16 3.70 4.57 -4.04 -0.02 3.68 16 9 N -0.58 -13.72 2.38 -164.39 -0.39 -14.11 16 10 C -0.25 -6.54 7.75 -15.06 -0.12 -6.66 16 11 H 0.06 1.55 6.94 -52.49 -0.36 1.19 16 12 C 0.01 0.36 4.96 -17.43 -0.09 0.27 16 13 N -0.88 -25.27 11.48 55.49 0.64 -24.64 16 14 Si 0.89 21.25 29.60 -169.99 -5.03 16.22 16 15 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 16 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 C 0.17 3.49 3.42 -66.82 -0.23 3.26 16 19 C -0.13 -2.42 6.43 -25.03 -0.16 -2.58 16 20 C -0.12 -1.94 6.91 -24.69 -0.17 -2.11 16 21 C -0.12 -2.03 6.83 -25.07 -0.17 -2.21 16 22 C -0.13 -2.66 6.24 -25.62 -0.16 -2.82 16 23 H 0.06 0.77 8.10 -51.93 -0.42 0.35 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.82 8.10 -51.93 -0.42 0.40 16 26 H 0.06 0.73 7.29 -51.93 -0.38 0.35 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.83 7.28 -51.92 -0.38 0.45 16 32 H 0.08 1.33 7.38 -51.93 -0.38 0.95 16 33 H 0.09 1.82 7.38 -51.93 -0.38 1.44 16 34 H 0.10 2.66 5.51 -51.93 -0.29 2.38 16 35 H 0.03 0.61 7.86 -51.92 -0.41 0.20 16 36 H 0.25 7.15 8.32 -40.82 -0.34 6.81 16 37 H 0.05 0.92 7.81 -51.93 -0.41 0.51 16 38 H 0.07 1.46 6.64 -51.93 -0.34 1.11 16 39 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 44 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.09 2.09 7.17 -51.92 -0.37 1.71 16 LS Contribution 349.25 15.07 5.26 5.26 Total: -1.00 -28.68 349.25 -8.43 -37.10 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -8.33 Total: 1.96 kcal Atomic # 6 Polarization: -11.59 SS G_CDS: -0.67 Total: -12.25 kcal Atomic # 7 Polarization: -38.99 SS G_CDS: 0.25 Total: -38.74 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.09 Total: -9.55 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -28.68 -8.43 -37.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753723001.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.910 kcal (2) G-P(sol) polarization free energy of solvation -28.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds