Wall clock time and date at job start Mon Mar 30 2020 09:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47509 * 2 1 4 4 C 1.52996 * 109.47151 * 239.99952 * 2 1 3 5 5 C 1.50704 * 109.47071 * 119.99856 * 2 1 3 6 6 O 1.20754 * 119.99738 * 0.02562 * 5 2 1 7 7 C 1.50701 * 119.99573 * 179.97438 * 5 2 1 8 8 C 1.53000 * 109.46759 * 180.02562 * 7 5 2 9 9 N 1.46504 * 109.47377 * 180.02562 * 8 7 5 10 10 C 1.36935 * 119.99618 * 269.99942 * 9 8 7 11 11 H 1.08000 * 119.99686 * 141.59442 * 10 9 8 12 12 C 1.38811 * 120.00526 * 321.59498 * 10 9 8 13 13 N 1.31623 * 119.99525 * 339.27261 * 12 10 9 14 14 Si 1.86792 * 120.00417 * 159.27568 * 12 10 9 15 15 H 1.48495 * 109.47394 * 59.99955 * 14 12 10 16 16 H 1.48497 * 109.47611 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.47131 * 299.99775 * 14 12 10 18 18 C 1.46497 * 120.00145 * 89.99916 * 9 8 7 19 19 C 1.54269 * 110.03222 * 242.55195 * 18 9 8 20 20 C 1.54963 * 104.16166 * 217.13650 * 19 18 9 21 21 C 1.54897 * 102.77547 * 37.88268 * 20 19 18 22 22 C 1.53870 * 110.03642 * 125.33395 * 18 9 8 23 23 H 1.09002 * 109.47300 * 300.00048 * 1 2 3 24 24 H 1.09003 * 109.46741 * 59.99716 * 1 2 3 25 25 H 1.08992 * 109.47138 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47428 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.46515 * 300.00280 * 3 2 1 28 28 H 1.09002 * 109.46879 * 59.99693 * 3 2 1 29 29 H 1.08999 * 109.47334 * 300.00183 * 4 2 1 30 30 H 1.09007 * 109.47410 * 60.00208 * 4 2 1 31 31 H 1.09008 * 109.47327 * 180.02562 * 4 2 1 32 32 H 1.09002 * 109.47027 * 60.00712 * 7 5 2 33 33 H 1.09000 * 109.47807 * 299.99870 * 7 5 2 34 34 H 1.08997 * 109.47217 * 59.99742 * 8 7 5 35 35 H 1.09009 * 109.47240 * 300.00187 * 8 7 5 36 36 H 0.97003 * 119.99804 * 175.02194 * 13 12 10 37 37 H 1.09006 * 110.01526 * 3.94025 * 18 9 8 38 38 H 1.09005 * 110.48467 * 335.78077 * 19 18 9 39 39 H 1.09001 * 110.48702 * 98.42591 * 19 18 9 40 40 H 1.09005 * 110.71856 * 279.57933 * 20 19 18 41 41 H 1.08993 * 110.92672 * 156.29493 * 20 19 18 42 42 H 1.08994 * 110.48732 * 203.40501 * 21 20 19 43 43 H 1.08998 * 110.59105 * 80.81953 * 21 20 19 44 44 H 1.08996 * 110.03529 * 238.57267 * 22 18 9 45 45 H 1.09008 * 110.02999 * 359.97438 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 2.0323 -0.7104 1.2305 6 8 1.2475 -1.1697 2.0251 7 6 3.5139 -0.8485 1.4686 8 6 3.7518 -1.6047 2.7773 9 7 5.1921 -1.7385 3.0092 10 6 5.8653 -2.8279 2.5243 11 1 6.8610 -2.7123 2.1223 12 6 5.2681 -4.0807 2.5494 13 7 4.2704 -4.3176 3.3746 14 14 5.8802 -5.4303 1.4123 15 1 7.3102 -5.7089 1.6995 16 1 5.0815 -6.6628 1.6318 17 1 5.7350 -4.9919 0.0008 18 6 5.9122 -0.7069 3.7599 19 6 6.9759 -0.0442 2.8602 20 6 8.1718 0.2109 3.8120 21 6 8.1648 -1.0470 4.7158 22 6 6.6676 -1.3438 4.9394 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 3.1301 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9564 0.8900 29 1 1.6766 -1.7489 -1.2492 30 1 1.6766 -0.2074 -2.1393 31 1 3.1300 -0.7217 -1.2490 32 1 3.9654 0.1415 1.5334 33 1 3.9648 -1.4002 0.6437 34 1 3.3003 -2.5946 2.7122 35 1 3.3009 -1.0534 3.6026 36 1 3.8058 -5.1685 3.3422 37 1 5.2127 0.0444 4.1265 38 1 7.2670 -0.7178 2.0542 39 1 6.6014 0.8963 2.4562 40 1 8.0087 1.1121 4.4032 41 1 9.1055 0.2805 3.2540 42 1 8.6581 -0.8377 5.6649 43 1 8.6485 -1.8838 4.2119 44 1 6.3354 -0.9011 5.8783 45 1 6.4981 -2.4206 4.9536 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000753723001.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 09:18:43 Heat of formation + Delta-G solvation = -62.155296 kcal Electronic energy + Delta-G solvation = -21791.127471 eV Core-core repulsion = 18807.561630 eV Total energy + Delta-G solvation = -2983.565841 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.98931 -39.27854 -36.65095 -36.18384 -33.39520 -31.53828 -29.29703 -28.29654 -28.18090 -27.99627 -26.50701 -24.16988 -22.19453 -21.29787 -20.73174 -19.21065 -18.17069 -17.17330 -16.87712 -16.44464 -16.30331 -15.99638 -15.83112 -14.92372 -14.87707 -14.55295 -14.42118 -14.03130 -13.66059 -13.38310 -13.12864 -13.03369 -12.98426 -12.93160 -12.75179 -12.60717 -12.41026 -12.23901 -12.07437 -11.85605 -11.83240 -11.75299 -11.70617 -11.69102 -11.40787 -11.22505 -11.14624 -10.45084 -10.25001 -8.50387 -7.71539 -5.41690 1.11857 1.45258 1.46987 1.53183 2.52752 3.05155 3.31559 3.68691 3.86615 3.96934 4.01624 4.06482 4.14027 4.32011 4.44226 4.47702 4.68820 4.70900 4.76335 4.78355 4.79794 4.86395 4.91365 4.95992 4.97528 4.99228 4.99396 5.02148 5.09522 5.19092 5.25403 5.27828 5.31446 5.35565 5.40132 5.45092 5.60332 5.64844 5.70141 5.76679 5.90062 6.52510 6.68945 7.23223 7.93822 8.47182 9.18684 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.014626 B = 0.007004 C = 0.005474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.946356 B = 3996.531756 C = 5113.741288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.114 4.114 3 C -0.132 4.132 4 C -0.135 4.135 5 C 0.364 3.636 6 O -0.497 6.497 7 C -0.172 4.172 8 C 0.161 3.839 9 N -0.589 5.589 10 C -0.239 4.239 11 H 0.061 0.939 12 C -0.041 4.041 13 N -0.919 5.919 14 Si 0.944 3.056 15 H -0.275 1.275 16 H -0.302 1.302 17 H -0.274 1.274 18 C 0.158 3.842 19 C -0.126 4.126 20 C -0.111 4.111 21 C -0.113 4.113 22 C -0.131 4.131 23 H 0.048 0.952 24 H 0.088 0.912 25 H 0.040 0.960 26 H 0.069 0.931 27 H 0.090 0.910 28 H 0.053 0.947 29 H 0.042 0.958 30 H 0.093 0.907 31 H 0.066 0.934 32 H 0.103 0.897 33 H 0.090 0.910 34 H 0.055 0.945 35 H 0.009 0.991 36 H 0.245 0.755 37 H 0.049 0.951 38 H 0.053 0.947 39 H 0.067 0.933 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.046 0.954 44 H 0.049 0.951 45 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.425 13.129 -7.697 15.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.116 4.116 3 C -0.189 4.189 4 C -0.193 4.193 5 C 0.241 3.759 6 O -0.373 6.373 7 C -0.212 4.212 8 C 0.034 3.966 9 N -0.309 5.309 10 C -0.370 4.370 11 H 0.079 0.921 12 C -0.237 4.237 13 N -0.563 5.563 14 Si 0.772 3.228 15 H -0.201 1.201 16 H -0.228 1.228 17 H -0.200 1.200 18 C 0.052 3.948 19 C -0.165 4.165 20 C -0.149 4.149 21 C -0.151 4.151 22 C -0.170 4.170 23 H 0.067 0.933 24 H 0.107 0.893 25 H 0.059 0.941 26 H 0.088 0.912 27 H 0.109 0.891 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.111 0.889 31 H 0.085 0.915 32 H 0.121 0.879 33 H 0.108 0.892 34 H 0.073 0.927 35 H 0.027 0.973 36 H 0.054 0.946 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.086 0.914 40 H 0.095 0.905 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.065 0.935 44 H 0.068 0.932 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -0.037 12.712 -7.175 14.597 hybrid contribution -0.098 -1.487 -0.069 1.492 sum -0.135 11.225 -7.244 13.360 Atomic orbital electron populations 1.21700 0.92804 1.01621 1.02594 1.21251 0.97625 0.98322 0.94353 1.21813 1.02024 0.91681 1.03360 1.21833 1.01935 0.99598 0.95895 1.25315 0.91359 0.73773 0.85419 1.90342 1.60041 1.40244 1.46657 1.22552 0.93756 1.02989 1.01853 1.20476 0.84963 0.99027 0.92085 1.44117 1.03975 1.21571 1.61207 1.19022 1.00794 0.85241 1.31906 0.92145 1.25841 0.99955 0.98822 0.99118 1.70232 1.26225 1.23767 1.36063 0.85709 0.77873 0.79051 0.80130 1.20061 1.22847 1.19987 1.21332 0.92922 0.89830 0.90739 1.22724 0.95989 0.99456 0.98338 1.22408 0.97959 0.97294 0.97223 1.22210 0.95203 0.97962 0.99687 1.22472 0.96321 1.00242 0.98009 0.93297 0.89322 0.94094 0.91172 0.89118 0.92806 0.93903 0.88865 0.91459 0.87943 0.89152 0.92663 0.97259 0.94629 0.93253 0.92794 0.91395 0.90467 0.90888 0.91084 0.93505 0.93232 0.94461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.15 7.76 71.98 0.56 -2.59 16 2 C -0.11 -2.90 0.87 -52.93 -0.05 -2.94 16 3 C -0.13 -2.52 8.26 71.98 0.59 -1.93 16 4 C -0.14 -3.01 8.25 71.98 0.59 -2.42 16 5 C 0.36 13.07 5.97 29.10 0.17 13.24 16 6 O -0.50 -22.07 15.60 -1.43 -0.02 -22.10 16 7 C -0.17 -6.52 5.30 29.85 0.16 -6.37 16 8 C 0.16 7.88 4.57 86.38 0.39 8.28 16 9 N -0.59 -28.61 2.38 -674.00 -1.60 -30.21 16 10 C -0.24 -12.64 7.75 84.03 0.65 -11.99 16 11 H 0.06 3.16 6.94 -2.91 -0.02 3.14 16 12 C -0.04 -2.26 4.96 84.86 0.42 -1.84 16 13 N -0.92 -55.65 11.48 21.65 0.25 -55.40 16 14 Si 0.94 44.81 29.60 68.60 2.03 46.84 16 15 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 16 H -0.30 -14.73 7.11 99.48 0.71 -14.03 16 17 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 18 C 0.16 6.46 3.42 45.72 0.16 6.62 16 19 C -0.13 -4.21 6.43 31.70 0.20 -4.00 16 20 C -0.11 -3.09 6.91 31.91 0.22 -2.87 16 21 C -0.11 -3.70 6.83 31.67 0.22 -3.48 16 22 C -0.13 -5.34 6.24 31.31 0.20 -5.14 16 23 H 0.05 1.26 8.10 -2.39 -0.02 1.24 16 24 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.04 1.12 8.10 -2.39 -0.02 1.10 16 26 H 0.07 1.29 7.29 -2.39 -0.02 1.28 16 27 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 31 H 0.07 1.50 7.28 -2.38 -0.02 1.48 16 32 H 0.10 3.35 7.38 -2.39 -0.02 3.33 16 33 H 0.09 3.51 7.38 -2.39 -0.02 3.49 16 34 H 0.06 3.22 5.51 -2.39 -0.01 3.21 16 35 H 0.01 0.46 7.86 -2.38 -0.02 0.44 16 36 H 0.24 14.62 8.32 -92.71 -0.77 13.85 16 37 H 0.05 1.95 7.81 -2.38 -0.02 1.93 16 38 H 0.05 2.03 6.64 -2.38 -0.02 2.01 16 39 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 41 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 43 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 45 H 0.04 1.87 7.17 -2.38 -0.02 1.85 16 Total: -1.00 -66.36 349.25 6.07 -60.29 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: 0.92 Total: 18.01 kcal Atomic # 6 Polarization: -21.92 SS G_CDS: 4.49 Total: -17.43 kcal Atomic # 7 Polarization: -84.26 SS G_CDS: -1.36 Total: -85.61 kcal Atomic # 8 Polarization: -22.07 SS G_CDS: -0.02 Total: -22.10 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -66.36 6.07 -60.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753723001.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.862 kcal (2) G-P(sol) polarization free energy of solvation -66.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds