Wall clock time and date at job start Mon Mar 30 2020 09:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47065 * 2 1 4 4 C 1.53001 * 109.46873 * 240.00243 * 2 1 3 5 5 C 1.50701 * 109.47086 * 119.99985 * 2 1 3 6 6 O 1.20756 * 120.00082 * 0.02562 * 5 2 1 7 7 C 1.50700 * 119.99677 * 179.97438 * 5 2 1 8 8 C 1.53000 * 109.47119 * 179.97438 * 7 5 2 9 9 N 1.46898 * 109.47348 * 180.02562 * 8 7 5 10 10 C 1.46894 * 111.00052 * 190.00416 * 9 8 7 11 11 C 1.50702 * 109.47343 * 71.30251 * 10 9 8 12 12 H 1.08001 * 119.99684 * 355.27718 * 11 10 9 13 13 C 1.37872 * 120.00325 * 175.26706 * 11 10 9 14 14 N 1.31514 * 119.99881 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 120.00374 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47028 * 90.00216 * 15 13 11 17 17 H 1.48500 * 109.47288 * 210.00517 * 15 13 11 18 18 H 1.48504 * 109.46793 * 330.00469 * 15 13 11 19 19 C 1.46900 * 110.99934 * 66.05107 * 9 8 7 20 20 C 1.52996 * 109.47112 * 191.46009 * 19 9 8 21 21 C 1.53003 * 117.49547 * 243.12967 * 20 19 9 22 22 C 1.53001 * 59.99958 * 252.50697 * 21 20 19 23 23 H 1.09007 * 109.46836 * 299.99982 * 1 2 3 24 24 H 1.08996 * 109.47572 * 59.99725 * 1 2 3 25 25 H 1.09000 * 109.46938 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47229 * 180.02562 * 3 2 1 27 27 H 1.09005 * 109.47388 * 299.99770 * 3 2 1 28 28 H 1.08995 * 109.47484 * 60.00001 * 3 2 1 29 29 H 1.09000 * 109.46894 * 299.99482 * 4 2 1 30 30 H 1.08996 * 109.47521 * 59.99687 * 4 2 1 31 31 H 1.09002 * 109.47056 * 180.02562 * 4 2 1 32 32 H 1.09009 * 109.47052 * 60.00148 * 7 5 2 33 33 H 1.08995 * 109.47628 * 300.00546 * 7 5 2 34 34 H 1.09009 * 109.46822 * 60.00271 * 8 7 5 35 35 H 1.08995 * 109.47532 * 300.00869 * 8 7 5 36 36 H 1.09002 * 109.46991 * 191.30304 * 10 9 8 37 37 H 1.09001 * 109.47459 * 311.30161 * 10 9 8 38 38 H 0.97004 * 119.99915 * 179.97438 * 14 13 11 39 39 H 1.09005 * 109.46774 * 311.45553 * 19 9 8 40 40 H 1.09000 * 109.47139 * 71.45513 * 19 9 8 41 41 H 1.08995 * 115.55278 * 28.83511 * 20 19 9 42 42 H 1.08995 * 117.50195 * 359.97438 * 21 20 19 43 43 H 1.09004 * 117.49922 * 145.02395 * 21 20 19 44 44 H 1.08997 * 117.50542 * 252.50689 * 22 21 20 45 45 H 1.09010 * 117.49800 * 107.48766 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0323 -0.7104 1.2305 6 8 1.2476 -1.1697 2.0251 7 6 3.5140 -0.8486 1.4686 8 6 3.7519 -1.6036 2.7779 9 7 5.1961 -1.7378 3.0104 10 6 5.4669 -2.6555 4.1249 11 6 5.1547 -4.0674 3.7004 12 1 4.7199 -4.2557 2.7299 13 6 5.4244 -5.1186 4.5507 14 7 5.9536 -4.8892 5.7326 15 14 5.0381 -6.8688 4.0241 16 1 6.2174 -7.4496 3.3335 17 1 4.7134 -7.6856 5.2211 18 1 3.8763 -6.8623 3.0992 19 6 5.8155 -0.4267 3.2457 20 6 7.3383 -0.5662 3.1989 21 6 8.1162 -0.2515 4.4783 22 6 8.1685 0.7154 3.2937 23 1 -0.3633 0.5139 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 1.6766 -1.7489 -1.2492 30 1 1.6766 -0.2074 -2.1393 31 1 3.1300 -0.7216 -1.2491 32 1 3.9655 0.1415 1.5334 33 1 3.9648 -1.4001 0.6436 34 1 3.3003 -2.5937 2.7135 35 1 3.3011 -1.0517 3.6027 36 1 6.5175 -2.5847 4.4068 37 1 4.8432 -2.3861 4.9772 38 1 6.1430 -5.6288 6.3310 39 1 5.4908 0.2721 2.4746 40 1 5.5147 -0.0531 4.2245 41 1 7.7178 -1.3657 2.5626 42 1 7.5431 0.0554 5.3531 43 1 9.0077 -0.8440 4.6840 44 1 9.0943 0.7591 2.7201 45 1 7.6297 1.6582 3.3893 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000753734344.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 09:18:35 Heat of formation + Delta-G solvation = -29.570983 kcal Electronic energy + Delta-G solvation = -21047.618430 eV Core-core repulsion = 18065.465551 eV Total energy + Delta-G solvation = -2982.152879 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.95379 -37.79606 -35.77026 -35.46863 -32.61958 -30.73518 -27.62385 -27.48220 -27.29934 -25.52352 -23.68641 -22.04827 -21.68962 -20.55917 -19.43535 -18.21478 -16.46987 -16.02919 -15.64175 -15.22243 -14.96833 -14.48744 -14.35899 -14.00921 -13.83296 -13.45025 -13.11122 -12.73601 -12.38518 -12.32623 -12.27621 -12.11871 -11.95760 -11.83110 -11.49442 -11.18981 -11.07793 -11.04992 -10.92503 -10.80501 -10.63765 -10.51094 -10.42586 -9.92386 -9.85393 -9.33064 -9.16478 -9.10084 -8.36078 -7.24123 -5.96528 -3.97009 2.17850 3.35892 3.41610 3.45868 3.99963 4.22604 4.47812 4.61646 4.75169 4.81923 4.98871 5.26200 5.30724 5.38716 5.39873 5.41938 5.43642 5.50636 5.53391 5.61098 5.69176 5.72095 5.78361 5.84572 5.88810 5.90640 6.01776 6.03685 6.09672 6.12327 6.21136 6.24176 6.30059 6.46494 6.53730 6.74018 6.82642 7.35769 7.42028 7.72721 7.85999 8.16626 8.25388 8.60171 9.09886 9.66449 11.14232 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.012626 B = 0.005894 C = 0.004309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.179021 B = 4749.226742 C = 6496.948788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.117 4.117 3 C -0.137 4.137 4 C -0.138 4.138 5 C 0.364 3.636 6 O -0.448 6.448 7 C -0.168 4.168 8 C 0.073 3.927 9 N -0.534 5.534 10 C 0.193 3.807 11 C -0.504 4.504 12 H 0.061 0.939 13 C 0.055 3.945 14 N -0.899 5.899 15 Si 0.895 3.105 16 H -0.281 1.281 17 H -0.288 1.288 18 H -0.274 1.274 19 C 0.083 3.917 20 C -0.129 4.129 21 C -0.178 4.178 22 C -0.190 4.190 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.060 0.940 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.091 0.909 33 H 0.104 0.896 34 H 0.088 0.912 35 H 0.023 0.977 36 H 0.042 0.958 37 H -0.014 1.014 38 H 0.260 0.740 39 H 0.063 0.937 40 H 0.022 0.978 41 H 0.112 0.888 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.088 0.912 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.705 13.381 -11.679 18.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.118 4.118 3 C -0.195 4.195 4 C -0.195 4.195 5 C 0.238 3.762 6 O -0.320 6.320 7 C -0.206 4.206 8 C -0.055 4.055 9 N -0.258 5.258 10 C 0.068 3.932 11 C -0.542 4.542 12 H 0.079 0.921 13 C -0.146 4.146 14 N -0.539 5.539 15 Si 0.723 3.277 16 H -0.207 1.207 17 H -0.214 1.214 18 H -0.199 1.199 19 C -0.046 4.046 20 C -0.148 4.148 21 C -0.215 4.215 22 C -0.227 4.227 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.109 0.891 33 H 0.122 0.878 34 H 0.106 0.894 35 H 0.041 0.959 36 H 0.060 0.940 37 H 0.003 0.997 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.040 0.960 41 H 0.130 0.870 42 H 0.107 0.893 43 H 0.109 0.891 44 H 0.107 0.893 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.864 12.825 -11.491 17.648 hybrid contribution -0.398 -0.624 0.570 0.935 sum -4.261 12.200 -10.921 16.920 Atomic orbital electron populations 1.21711 0.93006 1.02609 1.01736 1.21204 0.97481 0.97160 0.95999 1.21820 1.01682 0.93572 1.02386 1.21827 1.01844 1.00366 0.95511 1.24671 0.91630 0.75057 0.84872 1.90389 1.59241 1.37976 1.44421 1.22191 0.93779 1.02784 1.01835 1.21736 0.89725 1.00801 0.93255 1.62139 1.09527 1.08444 1.45707 1.19749 0.97117 0.90302 0.86001 1.21165 1.40563 0.90702 1.01809 0.92060 1.24961 0.95476 0.99160 0.94959 1.69961 1.44072 1.31638 1.08183 0.86546 0.78654 0.84543 0.77960 1.20690 1.21371 1.19904 1.21644 0.92093 0.92539 0.98315 1.22249 0.93607 0.98207 1.00695 1.22963 1.03007 1.03002 0.92571 1.22938 1.02103 0.94408 1.03273 0.92269 0.92339 0.92113 0.91595 0.91705 0.92392 0.92155 0.91770 0.91439 0.89078 0.87756 0.89394 0.95878 0.94017 0.99663 0.93045 0.91892 0.95964 0.86981 0.89284 0.89126 0.89349 0.89542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.41 7.76 37.16 0.29 -1.12 16 2 C -0.12 -1.26 0.87 -155.66 -0.14 -1.39 16 3 C -0.14 -1.19 8.25 37.16 0.31 -0.88 16 4 C -0.14 -1.27 8.26 37.16 0.31 -0.97 16 5 C 0.36 5.27 5.97 -29.03 -0.17 5.09 16 6 O -0.45 -8.19 15.60 6.00 0.09 -8.09 16 7 C -0.17 -2.48 4.92 -27.88 -0.14 -2.62 16 8 C 0.07 1.45 4.09 -3.82 -0.02 1.44 16 9 N -0.53 -11.35 4.45 -236.07 -1.05 -12.40 16 10 C 0.19 5.07 4.60 -4.98 -0.02 5.05 16 11 C -0.50 -14.35 8.52 -34.44 -0.29 -14.64 16 12 H 0.06 1.73 7.37 -52.49 -0.39 1.35 16 13 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 14 N -0.90 -27.07 13.29 55.43 0.74 -26.34 16 15 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 16 16 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 17 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 18 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 19 C 0.08 1.47 5.11 -3.83 -0.02 1.45 16 20 C -0.13 -2.19 4.73 -90.62 -0.43 -2.61 16 21 C -0.18 -2.86 10.05 -26.73 -0.27 -3.12 16 22 C -0.19 -2.57 10.25 -26.73 -0.27 -2.84 16 23 H 0.06 0.67 8.10 -51.92 -0.42 0.25 16 24 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 26 H 0.07 0.53 7.29 -51.92 -0.38 0.15 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.59 7.28 -51.93 -0.38 0.21 16 32 H 0.09 1.16 5.58 -51.92 -0.29 0.87 16 33 H 0.10 1.47 7.38 -51.93 -0.38 1.08 16 34 H 0.09 2.00 6.92 -51.92 -0.36 1.64 16 35 H 0.02 0.48 8.08 -51.93 -0.42 0.06 16 36 H 0.04 1.16 6.87 -51.93 -0.36 0.80 16 37 H -0.01 -0.41 8.06 -51.93 -0.42 -0.83 16 38 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 39 H 0.06 0.95 6.04 -51.93 -0.31 0.64 16 40 H 0.02 0.42 7.84 -51.93 -0.41 0.01 16 41 H 0.11 2.07 8.14 -51.93 -0.42 1.64 16 42 H 0.09 1.44 8.03 -51.93 -0.42 1.03 16 43 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 44 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.09 1.06 8.14 -51.92 -0.42 0.64 16 LS Contribution 357.57 15.07 5.39 5.39 Total: -1.00 -31.30 357.57 -9.11 -40.41 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -8.29 Total: -0.37 kcal Atomic # 6 Polarization: -14.72 SS G_CDS: -0.97 Total: -15.68 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: -0.31 Total: -38.74 kcal Atomic # 8 Polarization: -8.19 SS G_CDS: 0.09 Total: -8.09 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.30 -9.11 -40.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753734344.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.836 kcal (2) G-P(sol) polarization free energy of solvation -31.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds