Wall clock time and date at job start Mon Mar 30 2020 09:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47065 * 2 1 4 4 C 1.53001 * 109.46873 * 240.00243 * 2 1 3 5 5 C 1.50701 * 109.47086 * 119.99985 * 2 1 3 6 6 O 1.20756 * 120.00082 * 0.02562 * 5 2 1 7 7 C 1.50700 * 119.99677 * 179.97438 * 5 2 1 8 8 C 1.53000 * 109.47119 * 179.97438 * 7 5 2 9 9 N 1.46898 * 109.47348 * 180.02562 * 8 7 5 10 10 C 1.46894 * 111.00052 * 190.00416 * 9 8 7 11 11 C 1.50702 * 109.47343 * 71.30251 * 10 9 8 12 12 H 1.08001 * 119.99684 * 355.27718 * 11 10 9 13 13 C 1.37872 * 120.00325 * 175.26706 * 11 10 9 14 14 N 1.31514 * 119.99881 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 120.00374 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47028 * 90.00216 * 15 13 11 17 17 H 1.48500 * 109.47288 * 210.00517 * 15 13 11 18 18 H 1.48504 * 109.46793 * 330.00469 * 15 13 11 19 19 C 1.46900 * 110.99934 * 66.05107 * 9 8 7 20 20 C 1.52996 * 109.47112 * 191.46009 * 19 9 8 21 21 C 1.53003 * 117.49547 * 243.12967 * 20 19 9 22 22 C 1.53001 * 59.99958 * 252.50697 * 21 20 19 23 23 H 1.09007 * 109.46836 * 299.99982 * 1 2 3 24 24 H 1.08996 * 109.47572 * 59.99725 * 1 2 3 25 25 H 1.09000 * 109.46938 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47229 * 180.02562 * 3 2 1 27 27 H 1.09005 * 109.47388 * 299.99770 * 3 2 1 28 28 H 1.08995 * 109.47484 * 60.00001 * 3 2 1 29 29 H 1.09000 * 109.46894 * 299.99482 * 4 2 1 30 30 H 1.08996 * 109.47521 * 59.99687 * 4 2 1 31 31 H 1.09002 * 109.47056 * 180.02562 * 4 2 1 32 32 H 1.09009 * 109.47052 * 60.00148 * 7 5 2 33 33 H 1.08995 * 109.47628 * 300.00546 * 7 5 2 34 34 H 1.09009 * 109.46822 * 60.00271 * 8 7 5 35 35 H 1.08995 * 109.47532 * 300.00869 * 8 7 5 36 36 H 1.09002 * 109.46991 * 191.30304 * 10 9 8 37 37 H 1.09001 * 109.47459 * 311.30161 * 10 9 8 38 38 H 0.97004 * 119.99915 * 179.97438 * 14 13 11 39 39 H 1.09005 * 109.46774 * 311.45553 * 19 9 8 40 40 H 1.09000 * 109.47139 * 71.45513 * 19 9 8 41 41 H 1.08995 * 115.55278 * 28.83511 * 20 19 9 42 42 H 1.08995 * 117.50195 * 359.97438 * 21 20 19 43 43 H 1.09004 * 117.49922 * 145.02395 * 21 20 19 44 44 H 1.08997 * 117.50542 * 252.50689 * 22 21 20 45 45 H 1.09010 * 117.49800 * 107.48766 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0323 -0.7104 1.2305 6 8 1.2476 -1.1697 2.0251 7 6 3.5140 -0.8486 1.4686 8 6 3.7519 -1.6036 2.7779 9 7 5.1961 -1.7378 3.0104 10 6 5.4669 -2.6555 4.1249 11 6 5.1547 -4.0674 3.7004 12 1 4.7199 -4.2557 2.7299 13 6 5.4244 -5.1186 4.5507 14 7 5.9536 -4.8892 5.7326 15 14 5.0381 -6.8688 4.0241 16 1 6.2174 -7.4496 3.3335 17 1 4.7134 -7.6856 5.2211 18 1 3.8763 -6.8623 3.0992 19 6 5.8155 -0.4267 3.2457 20 6 7.3383 -0.5662 3.1989 21 6 8.1162 -0.2515 4.4783 22 6 8.1685 0.7154 3.2937 23 1 -0.3633 0.5139 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 1.6766 -1.7489 -1.2492 30 1 1.6766 -0.2074 -2.1393 31 1 3.1300 -0.7216 -1.2491 32 1 3.9655 0.1415 1.5334 33 1 3.9648 -1.4001 0.6436 34 1 3.3003 -2.5937 2.7135 35 1 3.3011 -1.0517 3.6027 36 1 6.5175 -2.5847 4.4068 37 1 4.8432 -2.3861 4.9772 38 1 6.1430 -5.6288 6.3310 39 1 5.4908 0.2721 2.4746 40 1 5.5147 -0.0531 4.2245 41 1 7.7178 -1.3657 2.5626 42 1 7.5431 0.0554 5.3531 43 1 9.0077 -0.8440 4.6840 44 1 9.0943 0.7591 2.7201 45 1 7.6297 1.6582 3.3893 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000753734344.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 09:18:35 Heat of formation + Delta-G solvation = -48.075559 kcal Electronic energy + Delta-G solvation = -21048.420848 eV Core-core repulsion = 18065.465551 eV Total energy + Delta-G solvation = -2982.955298 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.13645 -39.27959 -37.03492 -36.66374 -34.76912 -32.23188 -29.53263 -28.19123 -28.15336 -27.02892 -25.38060 -23.34820 -23.12309 -21.96904 -20.97192 -19.31377 -18.55546 -17.28338 -17.06341 -16.60679 -16.29330 -16.14762 -15.72945 -15.30517 -14.94718 -14.70708 -14.53279 -14.27747 -13.87688 -13.73810 -13.27309 -13.17283 -13.03480 -12.99746 -12.82595 -12.65797 -12.57555 -12.41549 -12.34151 -12.25696 -11.92151 -11.84330 -11.81609 -11.73586 -11.39533 -11.06929 -10.68430 -10.55843 -10.32883 -9.07014 -8.20414 -6.29672 1.02899 1.37537 1.39433 1.50196 2.38620 2.81343 3.00530 3.11955 3.40047 3.80445 3.90394 3.94666 4.00314 4.07782 4.11292 4.20334 4.30606 4.50420 4.56699 4.65000 4.71711 4.77888 4.78448 4.81352 4.83634 4.89218 4.97041 5.00141 5.01225 5.03974 5.06372 5.09475 5.22130 5.27405 5.29330 5.34487 5.41027 5.41928 5.44028 5.65578 6.07264 6.31596 6.59026 6.65019 6.85406 7.39017 8.90467 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.012626 B = 0.005894 C = 0.004309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.179021 B = 4749.226742 C = 6496.948788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.111 4.111 3 C -0.136 4.136 4 C -0.138 4.138 5 C 0.364 3.636 6 O -0.497 6.497 7 C -0.158 4.158 8 C 0.077 3.923 9 N -0.533 5.533 10 C 0.211 3.789 11 C -0.522 4.522 12 H 0.058 0.942 13 C 0.002 3.998 14 N -0.933 5.933 15 Si 0.965 3.035 16 H -0.268 1.268 17 H -0.282 1.282 18 H -0.269 1.269 19 C 0.084 3.916 20 C -0.154 4.154 21 C -0.199 4.199 22 C -0.143 4.143 23 H 0.045 0.955 24 H 0.087 0.913 25 H 0.042 0.958 26 H 0.077 0.923 27 H 0.088 0.912 28 H 0.051 0.949 29 H 0.046 0.954 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.122 0.878 33 H 0.119 0.881 34 H 0.049 0.951 35 H 0.005 0.995 36 H 0.022 0.978 37 H -0.054 1.054 38 H 0.263 0.737 39 H 0.100 0.900 40 H 0.010 0.990 41 H 0.094 0.906 42 H 0.080 0.920 43 H 0.086 0.914 44 H 0.111 0.889 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.257 15.002 -14.507 21.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.112 4.112 3 C -0.193 4.193 4 C -0.195 4.195 5 C 0.242 3.758 6 O -0.372 6.372 7 C -0.195 4.195 8 C -0.051 4.051 9 N -0.257 5.257 10 C 0.085 3.915 11 C -0.560 4.560 12 H 0.076 0.924 13 C -0.196 4.196 14 N -0.574 5.574 15 Si 0.789 3.211 16 H -0.193 1.193 17 H -0.208 1.208 18 H -0.194 1.194 19 C -0.044 4.044 20 C -0.173 4.173 21 C -0.236 4.236 22 C -0.181 4.181 23 H 0.065 0.935 24 H 0.105 0.895 25 H 0.061 0.939 26 H 0.096 0.904 27 H 0.107 0.893 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.108 0.892 31 H 0.094 0.906 32 H 0.140 0.860 33 H 0.137 0.863 34 H 0.067 0.933 35 H 0.023 0.977 36 H 0.040 0.960 37 H -0.037 1.037 38 H 0.072 0.928 39 H 0.118 0.882 40 H 0.028 0.972 41 H 0.112 0.888 42 H 0.098 0.902 43 H 0.105 0.895 44 H 0.129 0.871 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -3.405 14.471 -14.347 20.660 hybrid contribution -0.535 -1.089 1.483 1.916 sum -3.939 13.382 -12.864 18.975 Atomic orbital electron populations 1.21732 0.93099 1.01739 1.02512 1.21215 0.97429 0.98291 0.94249 1.21863 1.02446 0.91653 1.03350 1.21870 1.02421 0.99724 0.95473 1.25234 0.90995 0.73998 0.85605 1.90388 1.60115 1.40274 1.46472 1.22140 0.94906 1.03574 0.98887 1.21632 0.88421 0.99293 0.95762 1.62094 1.10515 1.09973 1.43094 1.19353 0.94886 0.91013 0.86288 1.21472 1.40641 0.92078 1.01799 0.92371 1.25871 0.95104 1.03736 0.94875 1.70088 1.44899 1.33104 1.09293 0.85452 0.78853 0.78977 0.77769 1.19315 1.20767 1.19393 1.21770 0.92723 0.91020 0.98881 1.22164 0.93162 1.00582 1.01387 1.22999 1.02810 1.04974 0.92837 1.23036 1.01774 0.93340 0.99914 0.93533 0.89454 0.93881 0.90416 0.89274 0.92995 0.93483 0.89181 0.90556 0.86037 0.86324 0.93255 0.97715 0.95973 1.03667 0.92776 0.88191 0.97203 0.88796 0.90192 0.89522 0.87078 0.87292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.64 7.76 71.98 0.56 -2.08 16 2 C -0.11 -2.12 0.87 -52.93 -0.05 -2.17 16 3 C -0.14 -1.85 8.25 71.98 0.59 -1.26 16 4 C -0.14 -2.12 8.26 71.98 0.59 -1.52 16 5 C 0.36 10.37 5.97 29.10 0.17 10.54 16 6 O -0.50 -18.85 15.60 -1.44 -0.02 -18.87 16 7 C -0.16 -4.48 4.92 29.85 0.15 -4.33 16 8 C 0.08 3.19 4.09 86.30 0.35 3.54 16 9 N -0.53 -23.32 4.45 -900.80 -4.00 -27.32 16 10 C 0.21 11.70 4.60 85.56 0.39 12.09 16 11 C -0.52 -30.89 8.52 25.60 0.22 -30.68 16 12 H 0.06 3.40 7.37 -2.91 -0.02 3.38 16 13 C 0.00 0.12 5.46 84.65 0.46 0.58 16 14 N -0.93 -58.03 13.29 21.45 0.28 -57.74 16 15 Si 0.96 46.14 29.54 68.60 2.03 48.16 16 16 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 17 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 18 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 19 C 0.08 2.94 5.11 86.30 0.44 3.38 16 20 C -0.15 -5.13 4.73 -10.79 -0.05 -5.18 16 21 C -0.20 -6.35 10.05 30.60 0.31 -6.04 16 22 C -0.14 -3.46 10.25 30.59 0.31 -3.14 16 23 H 0.05 1.02 8.10 -2.38 -0.02 1.00 16 24 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.04 0.99 8.10 -2.39 -0.02 0.97 16 26 H 0.08 0.89 7.29 -2.38 -0.02 0.87 16 27 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 28 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.08 1.05 7.28 -2.39 -0.02 1.03 16 32 H 0.12 2.71 5.58 -2.38 -0.01 2.69 16 33 H 0.12 3.09 7.38 -2.39 -0.02 3.07 16 34 H 0.05 2.39 6.92 -2.38 -0.02 2.37 16 35 H 0.00 0.20 8.08 -2.39 -0.02 0.18 16 36 H 0.02 1.30 6.87 -2.39 -0.02 1.29 16 37 H -0.05 -3.37 8.06 -2.39 -0.02 -3.38 16 38 H 0.26 15.39 8.31 -92.70 -0.77 14.62 16 39 H 0.10 2.73 6.04 -2.38 -0.01 2.72 16 40 H 0.01 0.37 7.84 -2.39 -0.02 0.35 16 41 H 0.09 3.47 8.14 -2.39 -0.02 3.45 16 42 H 0.08 2.66 8.03 -2.39 -0.02 2.64 16 43 H 0.09 2.78 8.14 -2.38 -0.02 2.76 16 44 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 45 H 0.11 2.19 8.14 -2.38 -0.02 2.17 16 Total: -1.00 -72.60 357.57 3.67 -68.93 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: 0.93 Total: 13.10 kcal Atomic # 6 Polarization: -30.72 SS G_CDS: 4.46 Total: -26.26 kcal Atomic # 7 Polarization: -81.34 SS G_CDS: -3.72 Total: -85.06 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: -0.02 Total: -18.87 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.16 kcal Total: -72.60 3.67 -68.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753734344.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.856 kcal (2) G-P(sol) polarization free energy of solvation -72.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds