Wall clock time and date at job start Mon Mar 30 2020 09:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47442 * 2 1 4 4 C 1.53000 * 109.47227 * 120.00351 * 2 1 3 5 5 C 1.50701 * 109.47086 * 174.99832 * 4 2 1 6 6 O 1.20756 * 120.00082 * 0.02562 * 5 4 2 7 7 C 1.50700 * 119.99677 * 179.97438 * 5 4 2 8 8 C 1.53000 * 109.47119 * 179.97438 * 7 5 4 9 9 N 1.46898 * 109.47348 * 180.02562 * 8 7 5 10 10 C 1.46894 * 111.00052 * 190.00416 * 9 8 7 11 11 C 1.50709 * 109.47267 * 71.30537 * 10 9 8 12 12 H 1.07997 * 119.99465 * 355.27019 * 11 10 9 13 13 C 1.37870 * 120.00000 * 175.27117 * 11 10 9 14 14 N 1.31514 * 120.00154 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 120.00101 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46963 * 60.00092 * 15 13 11 17 17 H 1.48500 * 109.46978 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47006 * 300.00241 * 15 13 11 19 19 C 1.46900 * 110.99934 * 66.05107 * 9 8 7 20 20 C 1.52996 * 109.47112 * 191.46009 * 19 9 8 21 21 C 1.53003 * 117.49547 * 243.12967 * 20 19 9 22 22 C 1.53000 * 60.00112 * 252.51090 * 21 20 19 23 23 H 1.08997 * 109.47165 * 299.99959 * 1 2 3 24 24 H 1.08999 * 109.46975 * 60.00001 * 1 2 3 25 25 H 1.09000 * 109.47373 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.46968 * 240.00034 * 2 1 3 27 27 H 1.08994 * 109.47400 * 300.00263 * 3 2 1 28 28 H 1.09007 * 109.47012 * 60.00060 * 3 2 1 29 29 H 1.09001 * 109.47646 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.46938 * 54.99545 * 4 2 1 31 31 H 1.08998 * 109.46749 * 295.00009 * 4 2 1 32 32 H 1.09009 * 109.47052 * 60.00148 * 7 5 4 33 33 H 1.08995 * 109.47628 * 300.00546 * 7 5 4 34 34 H 1.09009 * 109.46822 * 60.00271 * 8 7 5 35 35 H 1.08995 * 109.47532 * 300.00869 * 8 7 5 36 36 H 1.09002 * 109.46991 * 191.30304 * 10 9 8 37 37 H 1.09001 * 109.47459 * 311.30161 * 10 9 8 38 38 H 0.97002 * 120.00323 * 179.97438 * 14 13 11 39 39 H 1.09005 * 109.46774 * 311.45553 * 19 9 8 40 40 H 1.09000 * 109.47139 * 71.45513 * 19 9 8 41 41 H 1.08995 * 115.55278 * 28.83511 * 20 19 9 42 42 H 1.08995 * 117.50195 * 359.97438 * 21 20 19 43 43 H 1.09004 * 117.49922 * 145.02395 * 21 20 19 44 44 H 1.09004 * 117.50117 * 252.51409 * 22 21 20 45 45 H 1.09002 * 117.50445 * 107.48868 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.8295 1.1888 6 8 4.1424 -0.3760 0.2443 7 6 4.2944 -1.5026 2.3076 8 6 5.7932 -1.4785 2.0009 9 7 6.5267 -2.1352 3.0912 10 6 7.9741 -1.9255 2.9530 11 6 8.3056 -0.4888 3.2649 12 1 7.5130 0.2173 3.4636 13 6 9.6207 -0.0761 3.2965 14 7 10.5859 -0.9362 3.0550 15 14 10.0317 1.7049 3.6824 16 1 9.5145 2.0513 5.0307 17 1 11.5048 1.8902 3.6542 18 1 9.4025 2.5889 2.6687 19 6 6.2059 -3.5673 3.1538 20 6 6.7529 -4.1561 4.4557 21 6 7.8300 -5.2370 4.3445 22 6 6.4097 -5.6134 4.7710 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.6767 1.9563 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 3.1301 1.4425 0.0005 30 1 1.6053 -1.7198 1.2951 31 1 1.7516 -0.1584 2.1369 32 1 3.9595 -2.5357 2.4007 33 1 4.1058 -0.9740 3.2419 34 1 6.1284 -0.4455 1.9075 35 1 5.9815 -2.0074 1.0666 36 1 8.5037 -2.5793 3.6460 37 1 8.2787 -2.1553 1.9319 38 1 11.5111 -0.6457 3.0769 39 1 5.1243 -3.6990 3.1217 40 1 6.6595 -4.0788 2.3048 41 1 6.8204 -3.4622 5.2936 42 1 8.1486 -5.5289 3.3438 43 1 8.6065 -5.2544 5.1093 44 1 6.2517 -5.8783 5.8165 45 1 5.7941 -6.1526 4.0511 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827970870.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 09:18:40 Heat of formation + Delta-G solvation = -32.026907 kcal Electronic energy + Delta-G solvation = -20650.510155 eV Core-core repulsion = 17668.250778 eV Total energy + Delta-G solvation = -2982.259376 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.71232 -37.80000 -35.78762 -35.34354 -32.63197 -31.01630 -28.35907 -27.61262 -27.19574 -25.11121 -22.97722 -21.94661 -20.94871 -20.24840 -19.46054 -19.12350 -16.48636 -16.12132 -15.64894 -15.55332 -14.84885 -14.58198 -14.46082 -14.05680 -13.87122 -13.46487 -13.13987 -12.77041 -12.64073 -12.37341 -12.19012 -11.98924 -11.90480 -11.45337 -11.22607 -11.18775 -11.04929 -10.91071 -10.80772 -10.77800 -10.66326 -10.50023 -10.44444 -9.92449 -9.85409 -9.33205 -9.18212 -9.10961 -8.36015 -7.24068 -5.96351 -3.97010 2.19131 3.37686 3.41143 3.44360 4.06103 4.23560 4.48097 4.68045 4.79811 4.86325 5.07424 5.25875 5.28806 5.36468 5.37813 5.39698 5.45309 5.53412 5.54441 5.58692 5.60127 5.78296 5.83677 5.86342 5.90058 5.96715 6.01684 6.06725 6.15211 6.23417 6.24895 6.30065 6.36646 6.46482 6.53603 6.74117 6.82774 7.35828 7.41984 7.76203 7.85722 8.16769 8.25567 8.60155 9.09601 9.66426 11.14369 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.012380 B = 0.005249 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.139855 B = 5333.096564 C = 7296.618501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.089 4.089 3 C -0.155 4.155 4 C -0.168 4.168 5 C 0.353 3.647 6 O -0.447 6.447 7 C -0.169 4.169 8 C 0.073 3.927 9 N -0.534 5.534 10 C 0.194 3.806 11 C -0.505 4.505 12 H 0.061 0.939 13 C 0.056 3.944 14 N -0.899 5.899 15 Si 0.895 3.105 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.277 1.277 19 C 0.082 3.918 20 C -0.129 4.129 21 C -0.178 4.178 22 C -0.190 4.190 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.074 0.926 27 H 0.051 0.949 28 H 0.049 0.951 29 H 0.073 0.927 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.103 0.897 34 H 0.088 0.912 35 H 0.023 0.977 36 H 0.041 0.959 37 H -0.015 1.015 38 H 0.261 0.739 39 H 0.063 0.937 40 H 0.022 0.978 41 H 0.112 0.888 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.088 0.912 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.561 -3.829 -1.338 18.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.107 4.107 3 C -0.212 4.212 4 C -0.205 4.205 5 C 0.228 3.772 6 O -0.320 6.320 7 C -0.207 4.207 8 C -0.055 4.055 9 N -0.259 5.259 10 C 0.069 3.931 11 C -0.543 4.543 12 H 0.079 0.921 13 C -0.145 4.145 14 N -0.539 5.539 15 Si 0.723 3.277 16 H -0.202 1.202 17 H -0.214 1.214 18 H -0.203 1.203 19 C -0.046 4.046 20 C -0.147 4.147 21 C -0.215 4.215 22 C -0.227 4.227 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.092 0.908 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.092 0.908 30 H 0.112 0.888 31 H 0.114 0.886 32 H 0.108 0.892 33 H 0.121 0.879 34 H 0.106 0.894 35 H 0.041 0.959 36 H 0.060 0.940 37 H 0.003 0.997 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.040 0.960 41 H 0.130 0.870 42 H 0.107 0.893 43 H 0.109 0.891 44 H 0.106 0.894 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -17.168 -3.376 -1.420 17.555 hybrid contribution 0.588 0.456 -0.410 0.849 sum -16.580 -2.921 -1.830 16.934 Atomic orbital electron populations 1.21856 0.95224 1.01535 1.01798 1.20937 0.95099 0.96976 0.97715 1.21965 1.03073 0.95115 1.01065 1.22221 0.95138 1.02756 1.00423 1.24682 0.91125 0.75301 0.86096 1.90370 1.71507 1.37147 1.33015 1.22196 0.97519 1.01906 0.99101 1.21733 0.90315 1.01582 0.91889 1.62141 1.11559 1.08435 1.43744 1.19742 0.80394 0.97603 0.95377 1.21126 0.91774 0.94545 1.46883 0.92114 1.24956 0.96362 0.97562 0.95626 1.69949 0.99614 1.34267 1.50042 0.86609 0.77002 0.85168 0.78925 1.20219 1.21402 1.20315 1.21646 0.98608 0.90272 0.94076 1.22246 1.01881 0.90320 1.00277 1.22963 0.91842 1.04301 1.02441 1.22939 0.99275 0.99175 1.01350 0.92672 0.92665 0.92802 0.90783 0.93034 0.93200 0.90849 0.88800 0.88564 0.89206 0.87876 0.89382 0.95858 0.94046 0.99684 0.92981 0.91869 0.95972 0.86996 0.89287 0.89129 0.89354 0.89543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.19 37.16 0.34 -0.83 16 2 C -0.09 -0.91 2.57 -90.62 -0.23 -1.14 16 3 C -0.16 -1.75 8.93 37.16 0.33 -1.41 16 4 C -0.17 -1.65 5.11 -27.88 -0.14 -1.79 16 5 C 0.35 4.82 6.88 -29.03 -0.20 4.62 16 6 O -0.45 -7.71 13.59 6.00 0.08 -7.63 16 7 C -0.17 -2.42 5.59 -27.88 -0.16 -2.58 16 8 C 0.07 1.43 4.09 -3.82 -0.02 1.42 16 9 N -0.53 -11.33 4.45 -236.07 -1.05 -12.38 16 10 C 0.19 5.07 4.60 -4.97 -0.02 5.05 16 11 C -0.50 -14.34 8.52 -34.44 -0.29 -14.63 16 12 H 0.06 1.71 7.37 -52.49 -0.39 1.32 16 13 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 14 N -0.90 -27.05 13.29 55.43 0.74 -26.32 16 15 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 C 0.08 1.46 5.11 -3.83 -0.02 1.44 16 20 C -0.13 -2.18 4.73 -90.62 -0.43 -2.61 16 21 C -0.18 -2.86 10.05 -26.73 -0.27 -3.13 16 22 C -0.19 -2.58 10.25 -26.73 -0.27 -2.85 16 23 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.07 0.85 7.96 -51.93 -0.41 0.44 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.07 1.02 5.96 -51.93 -0.31 0.71 16 30 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.09 1.10 6.34 -51.92 -0.33 0.78 16 33 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 34 H 0.09 1.98 6.92 -51.92 -0.36 1.62 16 35 H 0.02 0.48 8.08 -51.93 -0.42 0.06 16 36 H 0.04 1.15 6.87 -51.93 -0.36 0.79 16 37 H -0.01 -0.42 8.06 -51.93 -0.42 -0.84 16 38 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 39 H 0.06 0.95 6.04 -51.93 -0.31 0.64 16 40 H 0.02 0.41 7.84 -51.93 -0.41 0.01 16 41 H 0.11 2.07 8.14 -51.93 -0.42 1.64 16 42 H 0.09 1.44 8.03 -51.93 -0.42 1.03 16 43 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 44 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 358.74 15.07 5.41 5.41 Total: -1.00 -31.01 358.74 -9.66 -40.68 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -8.34 Total: 0.13 kcal Atomic # 6 Polarization: -15.45 SS G_CDS: -1.48 Total: -16.93 kcal Atomic # 7 Polarization: -38.38 SS G_CDS: -0.31 Total: -38.69 kcal Atomic # 8 Polarization: -7.71 SS G_CDS: 0.08 Total: -7.63 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.01 -9.66 -40.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827970870.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.650 kcal (2) G-P(sol) polarization free energy of solvation -31.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds