Wall clock time and date at job start Mon Mar 30 2020 09:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47442 * 2 1 4 4 C 1.53000 * 109.47227 * 120.00351 * 2 1 3 5 5 C 1.50701 * 109.47086 * 174.99832 * 4 2 1 6 6 O 1.20756 * 120.00082 * 0.02562 * 5 4 2 7 7 C 1.50700 * 119.99677 * 179.97438 * 5 4 2 8 8 C 1.53000 * 109.47119 * 179.97438 * 7 5 4 9 9 N 1.46898 * 109.47348 * 180.02562 * 8 7 5 10 10 C 1.46894 * 111.00052 * 190.00416 * 9 8 7 11 11 C 1.50709 * 109.47267 * 71.30537 * 10 9 8 12 12 H 1.07997 * 119.99465 * 355.27019 * 11 10 9 13 13 C 1.37870 * 120.00000 * 175.27117 * 11 10 9 14 14 N 1.31514 * 120.00154 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 120.00101 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46963 * 60.00092 * 15 13 11 17 17 H 1.48500 * 109.46978 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47006 * 300.00241 * 15 13 11 19 19 C 1.46900 * 110.99934 * 66.05107 * 9 8 7 20 20 C 1.52996 * 109.47112 * 191.46009 * 19 9 8 21 21 C 1.53003 * 117.49547 * 243.12967 * 20 19 9 22 22 C 1.53000 * 60.00112 * 252.51090 * 21 20 19 23 23 H 1.08997 * 109.47165 * 299.99959 * 1 2 3 24 24 H 1.08999 * 109.46975 * 60.00001 * 1 2 3 25 25 H 1.09000 * 109.47373 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.46968 * 240.00034 * 2 1 3 27 27 H 1.08994 * 109.47400 * 300.00263 * 3 2 1 28 28 H 1.09007 * 109.47012 * 60.00060 * 3 2 1 29 29 H 1.09001 * 109.47646 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.46938 * 54.99545 * 4 2 1 31 31 H 1.08998 * 109.46749 * 295.00009 * 4 2 1 32 32 H 1.09009 * 109.47052 * 60.00148 * 7 5 4 33 33 H 1.08995 * 109.47628 * 300.00546 * 7 5 4 34 34 H 1.09009 * 109.46822 * 60.00271 * 8 7 5 35 35 H 1.08995 * 109.47532 * 300.00869 * 8 7 5 36 36 H 1.09002 * 109.46991 * 191.30304 * 10 9 8 37 37 H 1.09001 * 109.47459 * 311.30161 * 10 9 8 38 38 H 0.97002 * 120.00323 * 179.97438 * 14 13 11 39 39 H 1.09005 * 109.46774 * 311.45553 * 19 9 8 40 40 H 1.09000 * 109.47139 * 71.45513 * 19 9 8 41 41 H 1.08995 * 115.55278 * 28.83511 * 20 19 9 42 42 H 1.08995 * 117.50195 * 359.97438 * 21 20 19 43 43 H 1.09004 * 117.49922 * 145.02395 * 21 20 19 44 44 H 1.09004 * 117.50117 * 252.51409 * 22 21 20 45 45 H 1.09002 * 117.50445 * 107.48868 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.8295 1.1888 6 8 4.1424 -0.3760 0.2443 7 6 4.2944 -1.5026 2.3076 8 6 5.7932 -1.4785 2.0009 9 7 6.5267 -2.1352 3.0912 10 6 7.9741 -1.9255 2.9530 11 6 8.3056 -0.4888 3.2649 12 1 7.5130 0.2173 3.4636 13 6 9.6207 -0.0761 3.2965 14 7 10.5859 -0.9362 3.0550 15 14 10.0317 1.7049 3.6824 16 1 9.5145 2.0513 5.0307 17 1 11.5048 1.8902 3.6542 18 1 9.4025 2.5889 2.6687 19 6 6.2059 -3.5673 3.1538 20 6 6.7529 -4.1561 4.4557 21 6 7.8300 -5.2370 4.3445 22 6 6.4097 -5.6134 4.7710 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.6767 1.9563 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 3.1301 1.4425 0.0005 30 1 1.6053 -1.7198 1.2951 31 1 1.7516 -0.1584 2.1369 32 1 3.9595 -2.5357 2.4007 33 1 4.1058 -0.9740 3.2419 34 1 6.1284 -0.4455 1.9075 35 1 5.9815 -2.0074 1.0666 36 1 8.5037 -2.5793 3.6460 37 1 8.2787 -2.1553 1.9319 38 1 11.5111 -0.6457 3.0769 39 1 5.1243 -3.6990 3.1217 40 1 6.6595 -4.0788 2.3048 41 1 6.8204 -3.4622 5.2936 42 1 8.1486 -5.5289 3.3438 43 1 8.6065 -5.2544 5.1093 44 1 6.2517 -5.8783 5.8165 45 1 5.7941 -6.1526 4.0511 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827970870.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 09:18:39 Heat of formation + Delta-G solvation = -50.004544 kcal Electronic energy + Delta-G solvation = -20651.289723 eV Core-core repulsion = 17668.250778 eV Total energy + Delta-G solvation = -2983.038945 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.86118 -39.26566 -37.06031 -36.41857 -34.76174 -32.43166 -29.63918 -29.26695 -27.94848 -26.71847 -24.75396 -23.14664 -22.47372 -21.30927 -20.88012 -20.19487 -18.57076 -17.36249 -16.99626 -16.81451 -16.35935 -16.00962 -15.80377 -15.34298 -15.10220 -14.84069 -14.41414 -14.30270 -13.93988 -13.80205 -13.37741 -13.21769 -13.01686 -12.78863 -12.69484 -12.66966 -12.39141 -12.34533 -12.25192 -12.10742 -11.91108 -11.81727 -11.66854 -11.53791 -11.39844 -11.06589 -10.67986 -10.55475 -10.30160 -9.05565 -8.19859 -6.29291 1.12904 1.37841 1.41398 1.48958 2.39041 2.86917 3.03583 3.12972 3.47088 3.88658 3.93030 4.01116 4.05901 4.08908 4.19779 4.22517 4.34492 4.51650 4.58138 4.65367 4.74573 4.76979 4.78632 4.81042 4.83019 4.88071 4.89732 5.02837 5.04835 5.06594 5.07737 5.16449 5.27521 5.29392 5.34450 5.35501 5.43987 5.47073 5.52236 5.65875 6.07876 6.33605 6.64733 6.72846 6.85815 7.39423 8.90844 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.012380 B = 0.005249 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.139855 B = 5333.096564 C = 7296.618501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.091 4.091 3 C -0.156 4.156 4 C -0.158 4.158 5 C 0.355 3.645 6 O -0.493 6.493 7 C -0.160 4.160 8 C 0.076 3.924 9 N -0.534 5.534 10 C 0.211 3.789 11 C -0.522 4.522 12 H 0.059 0.941 13 C 0.002 3.998 14 N -0.934 5.934 15 Si 0.965 3.035 16 H -0.264 1.264 17 H -0.281 1.281 18 H -0.274 1.274 19 C 0.084 3.916 20 C -0.154 4.154 21 C -0.199 4.199 22 C -0.144 4.144 23 H 0.065 0.935 24 H 0.055 0.945 25 H 0.066 0.934 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.039 0.961 30 H 0.126 0.874 31 H 0.120 0.880 32 H 0.121 0.879 33 H 0.117 0.883 34 H 0.049 0.951 35 H 0.004 0.996 36 H 0.021 0.979 37 H -0.055 1.055 38 H 0.264 0.736 39 H 0.101 0.899 40 H 0.009 0.991 41 H 0.093 0.907 42 H 0.079 0.921 43 H 0.086 0.914 44 H 0.111 0.889 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.604 -4.207 0.031 21.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.109 4.109 3 C -0.213 4.213 4 C -0.195 4.195 5 C 0.233 3.767 6 O -0.370 6.370 7 C -0.197 4.197 8 C -0.052 4.052 9 N -0.258 5.258 10 C 0.085 3.915 11 C -0.561 4.561 12 H 0.077 0.923 13 C -0.196 4.196 14 N -0.574 5.574 15 Si 0.789 3.211 16 H -0.189 1.189 17 H -0.206 1.206 18 H -0.199 1.199 19 C -0.044 4.044 20 C -0.172 4.172 21 C -0.236 4.236 22 C -0.181 4.181 23 H 0.084 0.916 24 H 0.074 0.926 25 H 0.085 0.915 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.058 0.942 30 H 0.144 0.856 31 H 0.138 0.862 32 H 0.139 0.861 33 H 0.136 0.864 34 H 0.068 0.932 35 H 0.023 0.977 36 H 0.039 0.961 37 H -0.037 1.037 38 H 0.072 0.928 39 H 0.119 0.881 40 H 0.027 0.973 41 H 0.111 0.889 42 H 0.098 0.902 43 H 0.104 0.896 44 H 0.129 0.871 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -20.245 -3.768 -0.037 20.592 hybrid contribution 1.552 0.533 -0.864 1.854 sum -18.693 -3.235 -0.900 18.992 Atomic orbital electron populations 1.21800 0.92930 1.02633 1.02416 1.20946 0.96876 0.95812 0.97286 1.21955 1.00900 0.96532 1.01910 1.22240 0.91391 1.04856 1.01027 1.25154 0.93128 0.73672 0.84731 1.90384 1.72801 1.39105 1.34688 1.22154 0.93177 1.04265 1.00084 1.21647 0.94001 0.98772 0.90782 1.62098 1.08438 1.11198 1.44073 1.19341 0.83673 0.96278 0.92190 1.21449 0.92113 0.95593 1.46906 0.92322 1.25870 0.96187 1.02247 0.95252 1.70080 1.00015 1.36486 1.50847 0.85512 0.77004 0.79416 0.79160 1.18882 1.20632 1.19886 1.21771 1.00796 0.87653 0.94179 1.22162 1.03897 0.91903 0.99259 1.22997 0.93415 1.05088 1.02147 1.23035 0.96482 0.95426 1.03164 0.91553 0.92621 0.91455 0.92657 0.92646 0.91952 0.94172 0.85647 0.86223 0.86102 0.86449 0.93240 0.97732 0.96110 1.03733 0.92775 0.88082 0.97256 0.88865 0.90197 0.89553 0.87115 0.87289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.19 71.98 0.66 -1.13 16 2 C -0.09 -1.68 2.57 -10.80 -0.03 -1.71 16 3 C -0.16 -3.41 8.93 71.98 0.64 -2.76 16 4 C -0.16 -2.59 5.11 29.85 0.15 -2.44 16 5 C 0.36 9.29 6.88 29.10 0.20 9.49 16 6 O -0.49 -17.57 13.59 -1.44 -0.02 -17.59 16 7 C -0.16 -4.29 5.59 29.85 0.17 -4.12 16 8 C 0.08 3.09 4.09 86.30 0.35 3.44 16 9 N -0.53 -23.25 4.45 -900.79 -4.00 -27.26 16 10 C 0.21 11.72 4.60 85.56 0.39 12.11 16 11 C -0.52 -30.88 8.52 25.60 0.22 -30.66 16 12 H 0.06 3.41 7.37 -2.91 -0.02 3.39 16 13 C 0.00 0.13 5.46 84.65 0.46 0.60 16 14 N -0.93 -58.09 13.29 21.44 0.28 -57.81 16 15 Si 0.96 46.04 29.54 68.60 2.03 48.07 16 16 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 17 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 18 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 19 C 0.08 2.93 5.11 86.30 0.44 3.37 16 20 C -0.15 -5.11 4.73 -10.79 -0.05 -5.16 16 21 C -0.20 -6.38 10.05 30.60 0.31 -6.07 16 22 C -0.14 -3.48 10.25 30.60 0.31 -3.17 16 23 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 24 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.05 1.23 7.96 -2.38 -0.02 1.21 16 27 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 29 H 0.04 1.15 5.96 -2.39 -0.01 1.13 16 30 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.12 2.51 6.34 -2.38 -0.02 2.50 16 33 H 0.12 2.89 8.14 -2.39 -0.02 2.87 16 34 H 0.05 2.35 6.92 -2.38 -0.02 2.34 16 35 H 0.00 0.19 8.08 -2.39 -0.02 0.17 16 36 H 0.02 1.22 6.87 -2.39 -0.02 1.21 16 37 H -0.05 -3.41 8.06 -2.39 -0.02 -3.42 16 38 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 39 H 0.10 2.74 6.04 -2.38 -0.01 2.72 16 40 H 0.01 0.35 7.84 -2.39 -0.02 0.33 16 41 H 0.09 3.46 8.14 -2.39 -0.02 3.44 16 42 H 0.08 2.66 8.03 -2.39 -0.02 2.64 16 43 H 0.09 2.78 8.14 -2.38 -0.02 2.76 16 44 H 0.11 2.24 8.14 -2.38 -0.02 2.22 16 45 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -72.45 358.74 3.44 -69.01 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: 0.92 Total: 13.78 kcal Atomic # 6 Polarization: -32.44 SS G_CDS: 4.23 Total: -28.20 kcal Atomic # 7 Polarization: -81.35 SS G_CDS: -3.72 Total: -85.07 kcal Atomic # 8 Polarization: -17.57 SS G_CDS: -0.02 Total: -17.59 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Total: -72.45 3.44 -69.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827970870.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.003 kcal (2) G-P(sol) polarization free energy of solvation -72.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds