Wall clock time and date at job start Mon Mar 30 2020 09:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46695 * 2 1 4 4 C 1.53003 * 109.47205 * 240.00481 * 2 1 3 5 5 C 1.50697 * 109.47375 * 120.00188 * 2 1 3 6 6 O 1.20760 * 119.99964 * 359.97438 * 5 2 1 7 7 C 1.50697 * 120.00011 * 180.02562 * 5 2 1 8 8 C 1.52998 * 109.47047 * 179.97438 * 7 5 2 9 9 N 1.46904 * 109.47283 * 179.97438 * 8 7 5 10 10 C 1.46846 * 110.99942 * 293.95697 * 9 8 7 11 11 C 1.53035 * 109.52744 * 174.16069 * 10 9 8 12 12 C 1.53123 * 109.27774 * 59.17321 * 11 10 9 13 13 C 1.53114 * 109.16198 * 302.35270 * 12 11 10 14 14 H 1.09000 * 109.50493 * 297.71120 * 13 12 11 15 15 C 1.50696 * 109.50126 * 177.59670 * 13 12 11 16 16 H 1.08003 * 119.99625 * 240.19388 * 15 13 12 17 17 C 1.37871 * 120.00478 * 60.19635 * 15 13 12 18 18 N 1.31518 * 120.00022 * 359.97438 * 17 15 13 19 19 Si 1.86799 * 120.00480 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47028 * 59.99717 * 19 17 15 21 21 H 1.48498 * 109.47574 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.47093 * 299.99847 * 19 17 15 23 23 C 1.46844 * 111.00328 * 169.74543 * 9 8 7 24 24 H 1.08996 * 109.47176 * 299.99132 * 1 2 3 25 25 H 1.09002 * 109.47523 * 60.00276 * 1 2 3 26 26 H 1.09009 * 109.46791 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47081 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47541 * 300.00314 * 3 2 1 29 29 H 1.09004 * 109.47098 * 60.00146 * 3 2 1 30 30 H 1.08993 * 109.46905 * 299.99528 * 4 2 1 31 31 H 1.08996 * 109.47008 * 59.99700 * 4 2 1 32 32 H 1.08999 * 109.46783 * 179.97438 * 4 2 1 33 33 H 1.09003 * 109.46931 * 59.99974 * 7 5 2 34 34 H 1.08995 * 109.47233 * 299.99736 * 7 5 2 35 35 H 1.09003 * 109.47112 * 60.00286 * 8 7 5 36 36 H 1.08996 * 109.47539 * 300.00252 * 8 7 5 37 37 H 1.09008 * 109.46456 * 294.17536 * 10 9 8 38 38 H 1.09003 * 109.46474 * 54.14041 * 10 9 8 39 39 H 1.08995 * 109.50534 * 179.12351 * 11 10 9 40 40 H 1.09011 * 109.49854 * 299.24031 * 11 10 9 41 41 H 1.09000 * 109.52219 * 182.44440 * 12 11 10 42 42 H 1.09001 * 109.57074 * 62.29217 * 12 11 10 43 43 H 0.97000 * 120.00379 * 180.02562 * 18 17 15 44 44 H 1.09000 * 109.46271 * 305.85568 * 23 9 8 45 45 H 1.09008 * 109.46154 * 65.83367 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2304 6 8 1.2477 -1.1690 2.0255 7 6 3.5140 -0.8476 1.4691 8 6 3.7518 -1.6029 2.7782 9 7 5.1961 -1.7371 3.0107 10 6 5.8151 -2.5969 1.9938 11 6 7.3341 -2.5969 2.1797 12 6 7.6717 -3.1094 3.5826 13 6 6.9757 -2.2258 4.6215 14 1 7.3511 -1.2056 4.5416 15 6 7.2548 -2.7586 6.0032 16 1 6.4380 -3.0737 6.6355 17 6 8.5528 -2.8439 6.4601 18 7 9.5476 -2.4606 5.6898 19 14 8.8989 -3.5050 8.1725 20 1 8.3892 -4.8958 8.2784 21 1 10.3629 -3.4946 8.4208 22 1 8.2195 -2.6508 9.1796 23 6 5.4671 -2.2366 4.3647 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0278 -0.0005 27 1 3.1299 1.4426 0.0005 28 1 1.6765 1.9564 -0.8899 29 1 1.6765 1.9563 0.8900 30 1 1.6768 -1.7488 -1.2493 31 1 1.6766 -0.2073 -2.1392 32 1 3.1300 -0.7207 -1.2495 33 1 3.9647 0.1428 1.5343 34 1 3.9654 -1.3986 0.6442 35 1 3.3011 -2.5932 2.7134 36 1 3.3004 -1.0515 3.6030 37 1 5.4365 -3.6137 2.0985 38 1 5.5707 -2.2191 1.0010 39 1 7.7920 -3.2474 1.4346 40 1 7.7152 -1.5825 2.0615 41 1 8.7503 -3.0702 3.7350 42 1 7.3261 -4.1377 3.6887 43 1 10.4609 -2.5209 6.0111 44 1 4.9700 -1.5970 5.0940 45 1 5.0902 -3.2551 4.4583 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852319317.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 09:18:18 Heat of formation + Delta-G solvation = -63.669386 kcal Electronic energy + Delta-G solvation = -21051.210771 eV Core-core repulsion = 18067.579275 eV Total energy + Delta-G solvation = -2983.631497 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.19387 -38.14177 -35.90928 -34.16097 -32.17223 -30.32376 -29.54443 -27.62308 -27.35593 -24.97536 -24.82399 -22.52326 -21.67316 -20.47105 -18.66339 -18.34715 -16.58802 -16.08713 -15.57846 -15.40477 -14.86261 -14.47003 -14.33513 -13.89946 -13.67394 -13.44663 -13.04143 -12.65364 -12.50317 -12.47574 -12.39708 -12.34208 -12.12838 -11.96930 -11.53477 -11.48592 -11.20717 -11.08248 -10.90889 -10.85769 -10.67122 -10.54586 -10.07720 -9.82254 -9.48364 -9.42016 -8.98284 -8.68686 -8.27647 -7.65502 -5.94985 -4.00980 1.93684 3.34368 3.38707 3.41569 3.77349 4.41359 4.47073 4.59682 4.61948 4.83011 5.05722 5.20009 5.29065 5.30729 5.34957 5.44189 5.47560 5.57431 5.58801 5.64498 5.69184 5.71580 5.80532 5.90770 5.94719 6.01506 6.08146 6.11442 6.16259 6.32925 6.44772 6.54347 6.72528 6.77642 6.99504 7.23953 7.40988 7.48220 7.68177 7.77732 7.84537 8.11130 8.19777 8.51136 9.02846 9.63138 11.11022 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.038256 B = 0.003624 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.739903 B = 7725.300285 C = 8084.143282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.117 4.117 3 C -0.139 4.139 4 C -0.139 4.139 5 C 0.366 3.634 6 O -0.452 6.452 7 C -0.168 4.168 8 C 0.064 3.936 9 N -0.539 5.539 10 C 0.060 3.940 11 C -0.117 4.117 12 C -0.111 4.111 13 C 0.055 3.945 14 H 0.034 0.966 15 C -0.515 4.515 16 H 0.053 0.947 17 C 0.063 3.937 18 N -0.889 5.889 19 Si 0.891 3.109 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.277 1.277 23 C 0.068 3.932 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.107 0.893 34 H 0.097 0.903 35 H 0.030 0.970 36 H 0.074 0.926 37 H 0.022 0.978 38 H 0.058 0.942 39 H 0.045 0.955 40 H 0.061 0.939 41 H 0.090 0.910 42 H 0.029 0.971 43 H 0.260 0.740 44 H 0.059 0.941 45 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.720 5.086 -14.578 20.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.118 4.118 3 C -0.196 4.196 4 C -0.196 4.196 5 C 0.240 3.760 6 O -0.325 6.325 7 C -0.205 4.205 8 C -0.064 4.064 9 N -0.263 5.263 10 C -0.068 4.068 11 C -0.155 4.155 12 C -0.149 4.149 13 C 0.037 3.963 14 H 0.053 0.947 15 C -0.554 4.554 16 H 0.071 0.929 17 C -0.138 4.138 18 N -0.528 5.528 19 Si 0.719 3.281 20 H -0.204 1.204 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.059 4.059 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.125 0.875 34 H 0.115 0.885 35 H 0.048 0.952 36 H 0.092 0.908 37 H 0.040 0.960 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.079 0.921 41 H 0.109 0.891 42 H 0.048 0.952 43 H 0.070 0.930 44 H 0.077 0.923 45 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -12.729 5.312 -14.174 19.778 hybrid contribution -0.088 -1.187 0.918 1.503 sum -12.817 4.124 -13.257 18.895 Atomic orbital electron populations 1.21714 0.92870 1.02523 1.01963 1.21198 0.97574 0.97353 0.95671 1.21837 1.01868 0.93295 1.02611 1.21834 1.01753 1.00243 0.95759 1.24669 0.91412 0.74898 0.84979 1.90378 1.59292 1.38350 1.44439 1.22143 0.94082 1.04047 1.00274 1.21819 0.89750 0.98537 0.96303 1.62008 1.09053 1.50928 1.04348 1.22090 0.96455 0.93966 0.94332 1.21674 0.93283 1.01047 0.99477 1.21654 1.04301 0.97531 0.91420 1.18657 0.87510 0.96563 0.93613 0.94746 1.21126 0.92220 1.42576 0.99477 0.92906 1.24927 0.96311 0.95370 0.97205 1.69882 0.99064 1.47771 1.36075 0.86687 0.77006 0.79487 0.84966 1.20398 1.21327 1.20293 1.22309 1.00860 0.96251 0.86457 0.92142 0.92193 0.92237 0.91403 0.91586 0.92188 0.92323 0.91536 0.91524 0.87525 0.88472 0.95155 0.90750 0.95964 0.92404 0.93587 0.92071 0.89119 0.95202 0.93031 0.92251 0.96291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.19 7.76 37.16 0.29 -0.90 16 2 C -0.12 -1.04 0.87 -155.66 -0.14 -1.18 16 3 C -0.14 -1.04 8.25 37.16 0.31 -0.74 16 4 C -0.14 -1.02 8.26 37.16 0.31 -0.71 16 5 C 0.37 4.40 5.97 -29.04 -0.17 4.23 16 6 O -0.45 -6.95 15.61 6.00 0.09 -6.86 16 7 C -0.17 -2.05 4.91 -27.89 -0.14 -2.19 16 8 C 0.06 1.03 4.25 -3.82 -0.02 1.01 16 9 N -0.54 -10.04 4.65 -234.67 -1.09 -11.13 16 10 C 0.06 1.04 5.29 -3.84 -0.02 1.02 16 11 C -0.12 -2.26 6.09 -26.65 -0.16 -2.43 16 12 C -0.11 -2.64 5.03 -26.61 -0.13 -2.78 16 13 C 0.06 1.40 2.26 -91.70 -0.21 1.19 16 14 H 0.03 0.96 8.14 -51.93 -0.42 0.54 16 15 C -0.52 -14.32 8.56 -34.44 -0.29 -14.61 16 16 H 0.05 1.45 7.74 -52.48 -0.41 1.05 16 17 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 18 N -0.89 -25.47 11.36 55.43 0.63 -24.84 16 19 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 C 0.07 1.49 4.68 -3.84 -0.02 1.47 16 24 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 25 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.57 8.10 -51.92 -0.42 0.15 16 27 H 0.07 0.48 7.28 -51.93 -0.38 0.10 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.46 7.29 -51.93 -0.38 0.08 16 33 H 0.11 1.22 7.38 -51.93 -0.38 0.84 16 34 H 0.10 1.06 5.67 -51.93 -0.29 0.77 16 35 H 0.03 0.51 8.08 -51.93 -0.42 0.09 16 36 H 0.07 1.25 7.94 -51.93 -0.41 0.83 16 37 H 0.02 0.40 8.14 -51.92 -0.42 -0.02 16 38 H 0.06 0.84 6.22 -51.93 -0.32 0.52 16 39 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.06 1.21 8.14 -51.92 -0.42 0.79 16 41 H 0.09 2.40 6.16 -51.93 -0.32 2.08 16 42 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 44 H 0.06 1.30 8.01 -51.93 -0.42 0.88 16 45 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16 LS Contribution 345.82 15.07 5.21 5.21 Total: -1.00 -29.69 345.82 -9.03 -38.72 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -8.36 Total: -2.59 kcal Atomic # 6 Polarization: -14.45 SS G_CDS: -0.49 Total: -14.94 kcal Atomic # 7 Polarization: -35.51 SS G_CDS: -0.46 Total: -35.98 kcal Atomic # 8 Polarization: -6.95 SS G_CDS: 0.09 Total: -6.86 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.69 -9.03 -38.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852319317.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.951 kcal (2) G-P(sol) polarization free energy of solvation -29.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds