Wall clock time and date at job start Mon Mar 30 2020 09:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46695 * 2 1 4 4 C 1.53003 * 109.47205 * 240.00481 * 2 1 3 5 5 C 1.50697 * 109.47375 * 120.00188 * 2 1 3 6 6 O 1.20760 * 119.99964 * 359.97438 * 5 2 1 7 7 C 1.50697 * 120.00011 * 180.02562 * 5 2 1 8 8 C 1.52998 * 109.47047 * 179.97438 * 7 5 2 9 9 N 1.46904 * 109.47283 * 179.97438 * 8 7 5 10 10 C 1.46846 * 110.99942 * 293.95697 * 9 8 7 11 11 C 1.53035 * 109.52744 * 174.16069 * 10 9 8 12 12 C 1.53123 * 109.27774 * 59.17321 * 11 10 9 13 13 C 1.53114 * 109.16198 * 302.35270 * 12 11 10 14 14 H 1.09000 * 109.50493 * 297.71120 * 13 12 11 15 15 C 1.50696 * 109.50126 * 177.59670 * 13 12 11 16 16 H 1.08003 * 119.99625 * 240.19388 * 15 13 12 17 17 C 1.37871 * 120.00478 * 60.19635 * 15 13 12 18 18 N 1.31518 * 120.00022 * 359.97438 * 17 15 13 19 19 Si 1.86799 * 120.00480 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47028 * 59.99717 * 19 17 15 21 21 H 1.48498 * 109.47574 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.47093 * 299.99847 * 19 17 15 23 23 C 1.46844 * 111.00328 * 169.74543 * 9 8 7 24 24 H 1.08996 * 109.47176 * 299.99132 * 1 2 3 25 25 H 1.09002 * 109.47523 * 60.00276 * 1 2 3 26 26 H 1.09009 * 109.46791 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47081 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47541 * 300.00314 * 3 2 1 29 29 H 1.09004 * 109.47098 * 60.00146 * 3 2 1 30 30 H 1.08993 * 109.46905 * 299.99528 * 4 2 1 31 31 H 1.08996 * 109.47008 * 59.99700 * 4 2 1 32 32 H 1.08999 * 109.46783 * 179.97438 * 4 2 1 33 33 H 1.09003 * 109.46931 * 59.99974 * 7 5 2 34 34 H 1.08995 * 109.47233 * 299.99736 * 7 5 2 35 35 H 1.09003 * 109.47112 * 60.00286 * 8 7 5 36 36 H 1.08996 * 109.47539 * 300.00252 * 8 7 5 37 37 H 1.09008 * 109.46456 * 294.17536 * 10 9 8 38 38 H 1.09003 * 109.46474 * 54.14041 * 10 9 8 39 39 H 1.08995 * 109.50534 * 179.12351 * 11 10 9 40 40 H 1.09011 * 109.49854 * 299.24031 * 11 10 9 41 41 H 1.09000 * 109.52219 * 182.44440 * 12 11 10 42 42 H 1.09001 * 109.57074 * 62.29217 * 12 11 10 43 43 H 0.97000 * 120.00379 * 180.02562 * 18 17 15 44 44 H 1.09000 * 109.46271 * 305.85568 * 23 9 8 45 45 H 1.09008 * 109.46154 * 65.83367 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2304 6 8 1.2477 -1.1690 2.0255 7 6 3.5140 -0.8476 1.4691 8 6 3.7518 -1.6029 2.7782 9 7 5.1961 -1.7371 3.0107 10 6 5.8151 -2.5969 1.9938 11 6 7.3341 -2.5969 2.1797 12 6 7.6717 -3.1094 3.5826 13 6 6.9757 -2.2258 4.6215 14 1 7.3511 -1.2056 4.5416 15 6 7.2548 -2.7586 6.0032 16 1 6.4380 -3.0737 6.6355 17 6 8.5528 -2.8439 6.4601 18 7 9.5476 -2.4606 5.6898 19 14 8.8989 -3.5050 8.1725 20 1 8.3892 -4.8958 8.2784 21 1 10.3629 -3.4946 8.4208 22 1 8.2195 -2.6508 9.1796 23 6 5.4671 -2.2366 4.3647 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0278 -0.0005 27 1 3.1299 1.4426 0.0005 28 1 1.6765 1.9564 -0.8899 29 1 1.6765 1.9563 0.8900 30 1 1.6768 -1.7488 -1.2493 31 1 1.6766 -0.2073 -2.1392 32 1 3.1300 -0.7207 -1.2495 33 1 3.9647 0.1428 1.5343 34 1 3.9654 -1.3986 0.6442 35 1 3.3011 -2.5932 2.7134 36 1 3.3004 -1.0515 3.6030 37 1 5.4365 -3.6137 2.0985 38 1 5.5707 -2.2191 1.0010 39 1 7.7920 -3.2474 1.4346 40 1 7.7152 -1.5825 2.0615 41 1 8.7503 -3.0702 3.7350 42 1 7.3261 -4.1377 3.6887 43 1 10.4609 -2.5209 6.0111 44 1 4.9700 -1.5970 5.0940 45 1 5.0902 -3.2551 4.4583 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852319317.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 09:18:17 Heat of formation + Delta-G solvation = -80.652062 kcal Electronic energy + Delta-G solvation = -21051.947196 eV Core-core repulsion = 18067.579275 eV Total energy + Delta-G solvation = -2984.367921 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.17454 -39.72416 -36.68874 -35.91579 -33.95077 -31.88828 -31.15118 -28.16488 -28.07159 -26.93167 -26.12918 -23.80893 -23.35623 -21.81485 -20.38492 -19.30292 -18.42827 -17.31723 -16.70087 -16.61731 -16.44174 -15.90701 -15.50713 -15.07146 -14.95528 -14.61877 -14.54786 -14.28793 -14.01759 -13.67008 -13.25845 -13.16510 -13.04662 -12.97572 -12.84748 -12.83814 -12.61783 -12.55757 -12.46021 -12.00416 -11.85070 -11.77126 -11.74807 -11.68592 -11.37586 -10.87565 -10.67685 -10.38163 -10.34296 -9.20183 -8.08679 -6.22806 1.00751 1.40833 1.42051 1.49793 2.41814 2.76513 3.17943 3.31478 3.79123 3.87612 3.95203 4.05932 4.14813 4.20523 4.32355 4.41177 4.55572 4.60165 4.63530 4.70901 4.77504 4.77959 4.86864 4.88857 4.91216 4.95997 4.99895 5.00739 5.02387 5.08297 5.12972 5.17946 5.26620 5.39435 5.40828 5.41754 5.51989 5.62989 5.95384 6.10931 6.19101 6.30000 6.44718 6.56843 6.88800 7.44729 8.95726 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.038256 B = 0.003624 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.739903 B = 7725.300285 C = 8084.143282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.112 4.112 3 C -0.138 4.138 4 C -0.138 4.138 5 C 0.369 3.631 6 O -0.494 6.494 7 C -0.161 4.161 8 C 0.067 3.933 9 N -0.541 5.541 10 C 0.061 3.939 11 C -0.110 4.110 12 C -0.105 4.105 13 C 0.054 3.946 14 H 0.001 0.999 15 C -0.542 4.542 16 H 0.047 0.953 17 C 0.016 3.984 18 N -0.913 5.913 19 Si 0.953 3.047 20 H -0.273 1.273 21 H -0.281 1.281 22 H -0.272 1.272 23 C 0.080 3.920 24 H 0.045 0.955 25 H 0.083 0.917 26 H 0.046 0.954 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.021 0.979 36 H 0.059 0.941 37 H 0.020 0.980 38 H 0.101 0.899 39 H 0.072 0.928 40 H 0.056 0.944 41 H 0.059 0.941 42 H 0.018 0.982 43 H 0.261 0.739 44 H 0.051 0.949 45 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.169 5.501 -16.598 21.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.113 4.113 3 C -0.195 4.195 4 C -0.195 4.195 5 C 0.246 3.754 6 O -0.369 6.369 7 C -0.199 4.199 8 C -0.061 4.061 9 N -0.266 5.266 10 C -0.066 4.066 11 C -0.147 4.147 12 C -0.144 4.144 13 C 0.036 3.964 14 H 0.019 0.981 15 C -0.580 4.580 16 H 0.065 0.935 17 C -0.183 4.183 18 N -0.552 5.552 19 Si 0.779 3.221 20 H -0.199 1.199 21 H -0.206 1.206 22 H -0.198 1.198 23 C -0.048 4.048 24 H 0.064 0.936 25 H 0.101 0.899 26 H 0.065 0.935 27 H 0.094 0.906 28 H 0.104 0.896 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.104 0.896 32 H 0.095 0.905 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.039 0.961 36 H 0.078 0.922 37 H 0.038 0.962 38 H 0.119 0.881 39 H 0.091 0.909 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.037 0.963 43 H 0.070 0.930 44 H 0.070 0.930 45 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges -13.183 5.735 -16.215 21.671 hybrid contribution 0.048 -1.298 1.547 2.020 sum -13.135 4.437 -14.668 20.184 Atomic orbital electron populations 1.21727 0.93072 1.01874 1.02407 1.21212 0.97431 0.98047 0.94640 1.21870 1.02376 0.92103 1.03196 1.21870 1.02399 0.99881 0.95348 1.25109 0.90939 0.73909 0.85457 1.90380 1.60088 1.40362 1.46107 1.22130 0.94796 1.04413 0.98515 1.21808 0.87637 0.98494 0.98178 1.61972 1.10904 1.50851 1.02856 1.22160 0.94676 0.94010 0.95802 1.21588 0.95145 1.01032 0.96973 1.21473 1.01987 0.96762 0.94144 1.18570 0.89832 0.94654 0.93380 0.98104 1.21498 0.92487 1.43112 1.00917 0.93454 1.25689 0.96092 0.95546 1.00950 1.70015 0.99293 1.48286 1.37611 0.85691 0.77045 0.78949 0.80428 1.19850 1.20625 1.19751 1.21989 0.98334 0.95685 0.88762 0.93569 0.89851 0.93470 0.90610 0.89593 0.93107 0.92926 0.89616 0.90514 0.86159 0.86238 0.96071 0.92193 0.96179 0.88124 0.90905 0.92488 0.92200 0.96268 0.92957 0.93013 0.97236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.16 7.76 71.98 0.56 -1.60 16 2 C -0.11 -1.72 0.87 -52.93 -0.05 -1.77 16 3 C -0.14 -1.66 8.25 71.98 0.59 -1.06 16 4 C -0.14 -1.54 8.26 71.98 0.59 -0.94 16 5 C 0.37 8.30 5.97 29.10 0.17 8.48 16 6 O -0.49 -15.15 15.61 -1.45 -0.02 -15.17 16 7 C -0.16 -3.54 4.91 29.85 0.15 -3.40 16 8 C 0.07 2.09 4.25 86.30 0.37 2.45 16 9 N -0.54 -19.72 4.65 -896.35 -4.17 -23.90 16 10 C 0.06 1.98 5.29 86.33 0.46 2.44 16 11 C -0.11 -4.09 6.09 30.65 0.19 -3.90 16 12 C -0.11 -5.11 5.03 30.67 0.15 -4.95 16 13 C 0.05 2.84 2.26 -11.49 -0.03 2.82 16 14 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 15 C -0.54 -30.98 8.56 25.60 0.22 -30.76 16 16 H 0.05 2.68 7.74 -2.91 -0.02 2.66 16 17 C 0.02 0.92 5.30 84.65 0.45 1.37 16 18 N -0.91 -53.43 11.36 21.45 0.24 -53.19 16 19 Si 0.95 44.50 29.54 68.60 2.03 46.53 16 20 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 21 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 22 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 23 C 0.08 3.58 4.68 86.32 0.40 3.99 16 24 H 0.05 0.87 8.10 -2.39 -0.02 0.85 16 25 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.05 0.87 8.10 -2.38 -0.02 0.85 16 27 H 0.07 0.80 7.28 -2.39 -0.02 0.78 16 28 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 30 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.08 0.72 7.29 -2.39 -0.02 0.70 16 33 H 0.12 2.39 7.38 -2.39 -0.02 2.37 16 34 H 0.12 2.11 5.67 -2.39 -0.01 2.10 16 35 H 0.02 0.70 8.08 -2.39 -0.02 0.68 16 36 H 0.06 2.03 7.94 -2.39 -0.02 2.01 16 37 H 0.02 0.67 8.14 -2.38 -0.02 0.65 16 38 H 0.10 2.46 6.22 -2.39 -0.01 2.45 16 39 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16 41 H 0.06 3.26 6.16 -2.39 -0.01 3.24 16 42 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 44 H 0.05 2.34 8.01 -2.39 -0.02 2.32 16 45 H 0.01 0.43 8.14 -2.38 -0.02 0.42 16 Total: -1.00 -66.46 345.82 3.23 -63.23 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: 0.92 Total: 9.34 kcal Atomic # 6 Polarization: -31.08 SS G_CDS: 4.23 Total: -26.85 kcal Atomic # 7 Polarization: -73.16 SS G_CDS: -3.93 Total: -77.08 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: -0.02 Total: -15.17 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -66.46 3.23 -63.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852319317.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.420 kcal (2) G-P(sol) polarization free energy of solvation -66.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds