Wall clock time and date at job start Mon Mar 30 2020 09:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47102 * 2 1 4 4 C 1.52993 * 109.47412 * 239.99362 * 2 1 3 5 5 C 1.50700 * 109.46698 * 119.99241 * 2 1 3 6 6 O 1.20757 * 120.00200 * 0.02562 * 5 2 1 7 7 C 1.50706 * 119.99701 * 179.97438 * 5 2 1 8 8 C 1.53002 * 109.47068 * 180.02562 * 7 5 2 9 9 N 1.46895 * 109.47258 * 180.02562 * 8 7 5 10 10 C 1.46854 * 110.99648 * 45.74906 * 9 8 7 11 11 C 1.53037 * 109.52285 * 185.80147 * 10 9 8 12 12 C 1.53114 * 109.31211 * 300.88400 * 11 10 9 13 13 C 1.53125 * 109.16368 * 57.63311 * 12 11 10 14 14 H 1.09001 * 109.50021 * 62.32446 * 13 12 11 15 15 C 1.50696 * 109.50521 * 182.40526 * 13 12 11 16 16 H 1.07998 * 120.00051 * 120.00106 * 15 13 12 17 17 C 1.37882 * 120.00182 * 300.00142 * 15 13 12 18 18 N 1.31517 * 119.99859 * 0.02562 * 17 15 13 19 19 Si 1.86794 * 120.00064 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47311 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47369 * 120.00067 * 19 17 15 22 22 H 1.48497 * 109.46868 * 239.99946 * 19 17 15 23 23 C 1.46840 * 111.00367 * 170.00345 * 9 8 7 24 24 H 1.09003 * 109.47164 * 300.00480 * 1 2 3 25 25 H 1.09006 * 109.46861 * 60.00284 * 1 2 3 26 26 H 1.09000 * 109.47220 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47259 * 179.97438 * 3 2 1 28 28 H 1.09006 * 109.47030 * 299.99612 * 3 2 1 29 29 H 1.09003 * 109.47502 * 59.99727 * 3 2 1 30 30 H 1.09000 * 109.47313 * 300.00414 * 4 2 1 31 31 H 1.09006 * 109.46819 * 60.00327 * 4 2 1 32 32 H 1.08998 * 109.47292 * 179.97438 * 4 2 1 33 33 H 1.09003 * 109.46543 * 60.00874 * 7 5 2 34 34 H 1.08995 * 109.47459 * 300.00483 * 7 5 2 35 35 H 1.09002 * 109.46663 * 60.00152 * 8 7 5 36 36 H 1.08995 * 109.47261 * 300.00465 * 8 7 5 37 37 H 1.09000 * 109.42692 * 65.80880 * 10 9 8 38 38 H 1.09000 * 109.49358 * 305.83873 * 10 9 8 39 39 H 1.09002 * 109.50283 * 180.92217 * 11 10 9 40 40 H 1.09003 * 109.50113 * 60.84405 * 11 10 9 41 41 H 1.08998 * 109.52405 * 177.54026 * 12 11 10 42 42 H 1.09004 * 109.52689 * 297.66875 * 12 11 10 43 43 H 0.96999 * 120.00083 * 180.02562 * 18 17 15 44 44 H 1.09001 * 109.46294 * 54.14190 * 23 9 8 45 45 H 1.09005 * 109.46534 * 294.17986 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 2.0322 -0.7103 1.2306 6 8 1.2475 -1.1695 2.0253 7 6 3.5139 -0.8484 1.4688 8 6 3.7517 -1.6044 2.7776 9 7 5.1959 -1.7386 3.0102 10 6 5.8880 -0.4658 2.7703 11 6 7.3997 -0.6770 2.8802 12 6 7.7365 -1.2084 4.2762 13 6 6.9657 -2.5091 4.5184 14 1 7.2811 -3.2593 3.7933 15 6 7.2458 -3.0078 5.9126 16 1 6.4353 -3.1276 6.6162 17 6 8.5368 -3.3110 6.2900 18 7 9.5239 -3.1646 5.4333 19 14 8.8839 -3.9299 8.0179 20 1 7.6124 -4.0055 8.7814 21 1 9.4997 -5.2792 7.9461 22 1 9.8156 -2.9962 8.7002 23 6 5.4666 -2.2446 4.3618 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8901 29 1 1.6766 1.9564 0.8900 30 1 1.6767 -1.7490 -1.2490 31 1 1.6767 -0.2075 -2.1391 32 1 3.1300 -0.7209 -1.2493 33 1 3.9653 0.1416 1.5336 34 1 3.9647 -1.4001 0.6439 35 1 3.3003 -2.5944 2.7124 36 1 3.3008 -1.0532 3.6027 37 1 5.5686 0.2660 3.5122 38 1 5.6438 -0.1015 1.7724 39 1 7.9124 0.2712 2.7183 40 1 7.7220 -1.3980 2.1289 41 1 8.8072 -1.4014 4.3439 42 1 7.4514 -0.4700 5.0256 43 1 10.4321 -3.3783 5.6986 44 1 4.9158 -3.1718 4.5196 45 1 5.1496 -1.5046 5.0969 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852319318.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 09:18:21 Heat of formation + Delta-G solvation = -77.937780 kcal Electronic energy + Delta-G solvation = -21097.446912 eV Core-core repulsion = 18113.196691 eV Total energy + Delta-G solvation = -2984.250221 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.21579 -39.74924 -36.69552 -35.97025 -33.93053 -31.97133 -31.03733 -28.16722 -28.07265 -26.95103 -26.18079 -23.86063 -23.43291 -21.69366 -20.35665 -19.32698 -18.43651 -17.38133 -16.70248 -16.62368 -16.44566 -15.93207 -15.43153 -15.17969 -14.95082 -14.61498 -14.53408 -14.27311 -14.03298 -13.68553 -13.27013 -13.15233 -13.05151 -12.97047 -12.87314 -12.83340 -12.64159 -12.54843 -12.39623 -12.08059 -11.85401 -11.78591 -11.71430 -11.67806 -11.37200 -10.85472 -10.66081 -10.37942 -10.35740 -9.17781 -8.09217 -6.23246 0.99917 1.39010 1.40686 1.52211 2.41508 2.77730 3.17378 3.29010 3.77394 3.85353 3.93628 4.06874 4.12097 4.20404 4.33589 4.40268 4.52864 4.59212 4.62185 4.72266 4.77194 4.78830 4.85801 4.88470 4.91613 4.93932 4.99513 5.00479 5.03108 5.07891 5.12290 5.18160 5.25988 5.38766 5.40622 5.42089 5.52228 5.63137 5.95366 6.11248 6.19249 6.30850 6.44716 6.56018 6.88678 7.44367 8.95451 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.040437 B = 0.003634 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.271165 B = 7703.637651 C = 8094.589912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.112 4.112 3 C -0.139 4.139 4 C -0.138 4.138 5 C 0.368 3.632 6 O -0.493 6.493 7 C -0.169 4.169 8 C 0.067 3.933 9 N -0.544 5.544 10 C 0.056 3.944 11 C -0.111 4.111 12 C -0.105 4.105 13 C 0.054 3.946 14 H -0.001 1.001 15 C -0.539 4.539 16 H 0.047 0.953 17 C 0.015 3.985 18 N -0.913 5.913 19 Si 0.954 3.046 20 H -0.271 1.271 21 H -0.279 1.279 22 H -0.278 1.278 23 C 0.080 3.920 24 H 0.045 0.955 25 H 0.083 0.917 26 H 0.046 0.954 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.122 0.878 34 H 0.125 0.875 35 H 0.061 0.939 36 H 0.018 0.982 37 H 0.022 0.978 38 H 0.108 0.892 39 H 0.074 0.926 40 H 0.054 0.946 41 H 0.059 0.941 42 H 0.020 0.980 43 H 0.261 0.739 44 H 0.049 0.951 45 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.001 10.240 -15.040 22.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.113 4.113 3 C -0.196 4.196 4 C -0.195 4.195 5 C 0.245 3.755 6 O -0.369 6.369 7 C -0.206 4.206 8 C -0.060 4.060 9 N -0.268 5.268 10 C -0.071 4.071 11 C -0.148 4.148 12 C -0.144 4.144 13 C 0.035 3.965 14 H 0.018 0.982 15 C -0.578 4.578 16 H 0.065 0.935 17 C -0.184 4.184 18 N -0.552 5.552 19 Si 0.780 3.220 20 H -0.195 1.195 21 H -0.205 1.205 22 H -0.204 1.204 23 C -0.047 4.047 24 H 0.064 0.936 25 H 0.102 0.898 26 H 0.065 0.935 27 H 0.095 0.905 28 H 0.104 0.896 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.104 0.896 32 H 0.095 0.905 33 H 0.140 0.860 34 H 0.143 0.857 35 H 0.080 0.920 36 H 0.036 0.964 37 H 0.041 0.959 38 H 0.126 0.874 39 H 0.092 0.908 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.038 0.962 43 H 0.070 0.930 44 H 0.068 0.932 45 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges -13.054 9.633 -14.962 22.070 hybrid contribution 0.092 -0.171 1.991 2.001 sum -12.962 9.461 -12.971 20.634 Atomic orbital electron populations 1.21731 0.93102 1.01873 1.02405 1.21211 0.97425 0.98102 0.94566 1.21879 1.02430 0.92003 1.03256 1.21871 1.02434 0.99864 0.95354 1.25117 0.90902 0.73990 0.85458 1.90383 1.60069 1.40293 1.46130 1.22305 0.95188 1.03926 0.99134 1.21827 0.87772 0.99934 0.96506 1.62028 1.08564 1.28764 1.27469 1.22263 0.94088 0.89280 1.01457 1.21600 0.95332 1.00559 0.97357 1.21472 1.02004 0.96396 0.94501 1.18583 0.89816 0.93665 0.94465 0.98248 1.21547 0.93177 1.44237 0.98827 0.93503 1.25697 0.96107 0.95627 1.00921 1.70030 0.99959 1.49209 1.36015 0.85567 0.78092 0.78061 0.80297 1.19517 1.20452 1.20380 1.21979 0.98391 0.97252 0.87106 0.93568 0.89822 0.93520 0.90452 0.89552 0.93071 0.93035 0.89597 0.90480 0.86019 0.85693 0.92007 0.96396 0.95927 0.87450 0.90755 0.92683 0.92210 0.96156 0.92975 0.93246 0.97089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.15 7.76 71.98 0.56 -1.59 16 2 C -0.11 -1.69 0.87 -52.93 -0.05 -1.73 16 3 C -0.14 -1.52 8.26 71.98 0.59 -0.93 16 4 C -0.14 -1.56 8.25 71.98 0.59 -0.96 16 5 C 0.37 8.21 5.97 29.10 0.17 8.39 16 6 O -0.49 -15.13 15.60 -1.44 -0.02 -15.15 16 7 C -0.17 -3.62 4.22 29.85 0.13 -3.50 16 8 C 0.07 2.11 4.56 86.30 0.39 2.51 16 9 N -0.54 -19.89 4.80 -896.37 -4.31 -24.20 16 10 C 0.06 1.79 4.85 86.32 0.42 2.21 16 11 C -0.11 -4.10 6.09 30.64 0.19 -3.91 16 12 C -0.11 -5.10 5.02 30.67 0.15 -4.94 16 13 C 0.05 2.81 2.26 -11.49 -0.03 2.78 16 14 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 15 C -0.54 -30.94 8.56 25.60 0.22 -30.72 16 16 H 0.05 2.67 7.74 -2.91 -0.02 2.65 16 17 C 0.02 0.87 5.30 84.66 0.45 1.32 16 18 N -0.91 -53.47 11.35 21.45 0.24 -53.23 16 19 Si 0.95 44.63 29.54 68.60 2.03 46.65 16 20 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 21 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 22 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 23 C 0.08 3.63 4.65 86.33 0.40 4.03 16 24 H 0.05 0.85 8.10 -2.39 -0.02 0.83 16 25 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 26 H 0.05 0.86 8.10 -2.39 -0.02 0.85 16 27 H 0.08 0.69 7.28 -2.39 -0.02 0.68 16 28 H 0.09 0.65 8.14 -2.38 -0.02 0.63 16 29 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16 32 H 0.08 0.73 7.28 -2.39 -0.02 0.72 16 33 H 0.12 2.12 5.44 -2.39 -0.01 2.11 16 34 H 0.13 2.30 7.38 -2.39 -0.02 2.28 16 35 H 0.06 2.08 8.10 -2.39 -0.02 2.06 16 36 H 0.02 0.61 8.04 -2.39 -0.02 0.59 16 37 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.11 2.49 5.82 -2.39 -0.01 2.48 16 39 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 40 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.06 3.25 6.15 -2.39 -0.01 3.24 16 42 H 0.02 0.97 8.14 -2.38 -0.02 0.95 16 43 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 44 H 0.05 2.27 8.12 -2.39 -0.02 2.25 16 45 H 0.01 0.50 8.14 -2.38 -0.02 0.48 16 Total: -1.00 -67.32 344.69 3.06 -64.26 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: 0.92 Total: 8.72 kcal Atomic # 6 Polarization: -31.25 SS G_CDS: 4.20 Total: -27.05 kcal Atomic # 7 Polarization: -73.37 SS G_CDS: -4.06 Total: -77.43 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: -0.02 Total: -15.15 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal Total: -67.32 3.06 -64.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852319318.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.682 kcal (2) G-P(sol) polarization free energy of solvation -67.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds