Wall clock time and date at job start Mon Mar 30 2020 09:18:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.52998 * 109.47102 * 2 1
4 4 C 1.52993 * 109.47412 * 239.99362 * 2 1 3
5 5 C 1.50700 * 109.46698 * 119.99241 * 2 1 3
6 6 O 1.20757 * 120.00200 * 0.02562 * 5 2 1
7 7 C 1.50706 * 119.99701 * 179.97438 * 5 2 1
8 8 C 1.53002 * 109.47068 * 180.02562 * 7 5 2
9 9 N 1.46895 * 109.47258 * 180.02562 * 8 7 5
10 10 C 1.46854 * 110.99648 * 45.74906 * 9 8 7
11 11 C 1.53037 * 109.52285 * 185.80147 * 10 9 8
12 12 C 1.53114 * 109.31211 * 300.88400 * 11 10 9
13 13 C 1.53125 * 109.16368 * 57.63311 * 12 11 10
14 14 H 1.09001 * 109.50021 * 62.32446 * 13 12 11
15 15 C 1.50696 * 109.50521 * 182.40526 * 13 12 11
16 16 H 1.07998 * 120.00051 * 120.00106 * 15 13 12
17 17 C 1.37882 * 120.00182 * 300.00142 * 15 13 12
18 18 N 1.31517 * 119.99859 * 0.02562 * 17 15 13
19 19 Si 1.86794 * 120.00064 * 180.02562 * 17 15 13
20 20 H 1.48500 * 109.47311 * 359.97438 * 19 17 15
21 21 H 1.48493 * 109.47369 * 120.00067 * 19 17 15
22 22 H 1.48497 * 109.46868 * 239.99946 * 19 17 15
23 23 C 1.46840 * 111.00367 * 170.00345 * 9 8 7
24 24 H 1.09003 * 109.47164 * 300.00480 * 1 2 3
25 25 H 1.09006 * 109.46861 * 60.00284 * 1 2 3
26 26 H 1.09000 * 109.47220 * 180.02562 * 1 2 3
27 27 H 1.08998 * 109.47259 * 179.97438 * 3 2 1
28 28 H 1.09006 * 109.47030 * 299.99612 * 3 2 1
29 29 H 1.09003 * 109.47502 * 59.99727 * 3 2 1
30 30 H 1.09000 * 109.47313 * 300.00414 * 4 2 1
31 31 H 1.09006 * 109.46819 * 60.00327 * 4 2 1
32 32 H 1.08998 * 109.47292 * 179.97438 * 4 2 1
33 33 H 1.09003 * 109.46543 * 60.00874 * 7 5 2
34 34 H 1.08995 * 109.47459 * 300.00483 * 7 5 2
35 35 H 1.09002 * 109.46663 * 60.00152 * 8 7 5
36 36 H 1.08995 * 109.47261 * 300.00465 * 8 7 5
37 37 H 1.09000 * 109.42692 * 65.80880 * 10 9 8
38 38 H 1.09000 * 109.49358 * 305.83873 * 10 9 8
39 39 H 1.09002 * 109.50283 * 180.92217 * 11 10 9
40 40 H 1.09003 * 109.50113 * 60.84405 * 11 10 9
41 41 H 1.08998 * 109.52405 * 177.54026 * 12 11 10
42 42 H 1.09004 * 109.52689 * 297.66875 * 12 11 10
43 43 H 0.96999 * 120.00083 * 180.02562 * 18 17 15
44 44 H 1.09001 * 109.46294 * 54.14190 * 23 9 8
45 45 H 1.09005 * 109.46534 * 294.17986 * 23 9 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7213 -1.2491
5 6 2.0322 -0.7103 1.2306
6 8 1.2475 -1.1695 2.0253
7 6 3.5139 -0.8484 1.4688
8 6 3.7517 -1.6044 2.7776
9 7 5.1959 -1.7386 3.0102
10 6 5.8880 -0.4658 2.7703
11 6 7.3997 -0.6770 2.8802
12 6 7.7365 -1.2084 4.2762
13 6 6.9657 -2.5091 4.5184
14 1 7.2811 -3.2593 3.7933
15 6 7.2458 -3.0078 5.9126
16 1 6.4353 -3.1276 6.6162
17 6 8.5368 -3.3110 6.2900
18 7 9.5239 -3.1646 5.4333
19 14 8.8839 -3.9299 8.0179
20 1 7.6124 -4.0055 8.7814
21 1 9.4997 -5.2792 7.9461
22 1 9.8156 -2.9962 8.7002
23 6 5.4666 -2.2446 4.3618
24 1 -0.3633 0.5139 0.8900
25 1 -0.3633 0.5138 -0.8901
26 1 -0.3633 -1.0277 0.0005
27 1 3.1300 1.4425 0.0005
28 1 1.6767 1.9563 -0.8901
29 1 1.6766 1.9564 0.8900
30 1 1.6767 -1.7490 -1.2490
31 1 1.6767 -0.2075 -2.1391
32 1 3.1300 -0.7209 -1.2493
33 1 3.9653 0.1416 1.5336
34 1 3.9647 -1.4001 0.6439
35 1 3.3003 -2.5944 2.7124
36 1 3.3008 -1.0532 3.6027
37 1 5.5686 0.2660 3.5122
38 1 5.6438 -0.1015 1.7724
39 1 7.9124 0.2712 2.7183
40 1 7.7220 -1.3980 2.1289
41 1 8.8072 -1.4014 4.3439
42 1 7.4514 -0.4700 5.0256
43 1 10.4321 -3.3783 5.6986
44 1 4.9158 -3.1718 4.5196
45 1 5.1496 -1.5046 5.0969
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000852319318.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 09:18:21
Heat of formation + Delta-G solvation = -77.937780 kcal
Electronic energy + Delta-G solvation = -21097.446912 eV
Core-core repulsion = 18113.196691 eV
Total energy + Delta-G solvation = -2984.250221 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 267.194 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-41.21579 -39.74924 -36.69552 -35.97025 -33.93053 -31.97133 -31.03733 -28.16722
-28.07265 -26.95103 -26.18079 -23.86063 -23.43291 -21.69366 -20.35665 -19.32698
-18.43651 -17.38133 -16.70248 -16.62368 -16.44566 -15.93207 -15.43153 -15.17969
-14.95082 -14.61498 -14.53408 -14.27311 -14.03298 -13.68553 -13.27013 -13.15233
-13.05151 -12.97047 -12.87314 -12.83340 -12.64159 -12.54843 -12.39623 -12.08059
-11.85401 -11.78591 -11.71430 -11.67806 -11.37200 -10.85472 -10.66081 -10.37942
-10.35740 -9.17781 -8.09217 -6.23246 0.99917 1.39010 1.40686 1.52211
2.41508 2.77730 3.17378 3.29010 3.77394 3.85353 3.93628 4.06874
4.12097 4.20404 4.33589 4.40268 4.52864 4.59212 4.62185 4.72266
4.77194 4.78830 4.85801 4.88470 4.91613 4.93932 4.99513 5.00479
5.03108 5.07891 5.12290 5.18160 5.25988 5.38766 5.40622 5.42089
5.52228 5.63137 5.95366 6.11248 6.19249 6.30850 6.44716 6.56018
6.88678 7.44367 8.95451
Molecular weight = 267.19amu
Principal moments of inertia in cm(-1)
A = 0.040437 B = 0.003634 C = 0.003458
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 692.271165 B = 7703.637651 C = 8094.589912
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C -0.112 4.112
3 C -0.139 4.139
4 C -0.138 4.138
5 C 0.368 3.632
6 O -0.493 6.493
7 C -0.169 4.169
8 C 0.067 3.933
9 N -0.544 5.544
10 C 0.056 3.944
11 C -0.111 4.111
12 C -0.105 4.105
13 C 0.054 3.946
14 H -0.001 1.001
15 C -0.539 4.539
16 H 0.047 0.953
17 C 0.015 3.985
18 N -0.913 5.913
19 Si 0.954 3.046
20 H -0.271 1.271
21 H -0.279 1.279
22 H -0.278 1.278
23 C 0.080 3.920
24 H 0.045 0.955
25 H 0.083 0.917
26 H 0.046 0.954
27 H 0.077 0.923
28 H 0.086 0.914
29 H 0.050 0.950
30 H 0.050 0.950
31 H 0.085 0.915
32 H 0.076 0.924
33 H 0.122 0.878
34 H 0.125 0.875
35 H 0.061 0.939
36 H 0.018 0.982
37 H 0.022 0.978
38 H 0.108 0.892
39 H 0.074 0.926
40 H 0.054 0.946
41 H 0.059 0.941
42 H 0.020 0.980
43 H 0.261 0.739
44 H 0.049 0.951
45 H 0.011 0.989
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.001 10.240 -15.040 22.363
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C -0.113 4.113
3 C -0.196 4.196
4 C -0.195 4.195
5 C 0.245 3.755
6 O -0.369 6.369
7 C -0.206 4.206
8 C -0.060 4.060
9 N -0.268 5.268
10 C -0.071 4.071
11 C -0.148 4.148
12 C -0.144 4.144
13 C 0.035 3.965
14 H 0.018 0.982
15 C -0.578 4.578
16 H 0.065 0.935
17 C -0.184 4.184
18 N -0.552 5.552
19 Si 0.780 3.220
20 H -0.195 1.195
21 H -0.205 1.205
22 H -0.204 1.204
23 C -0.047 4.047
24 H 0.064 0.936
25 H 0.102 0.898
26 H 0.065 0.935
27 H 0.095 0.905
28 H 0.104 0.896
29 H 0.069 0.931
30 H 0.070 0.930
31 H 0.104 0.896
32 H 0.095 0.905
33 H 0.140 0.860
34 H 0.143 0.857
35 H 0.080 0.920
36 H 0.036 0.964
37 H 0.041 0.959
38 H 0.126 0.874
39 H 0.092 0.908
40 H 0.073 0.927
41 H 0.078 0.922
42 H 0.038 0.962
43 H 0.070 0.930
44 H 0.068 0.932
45 H 0.029 0.971
Dipole moment (debyes) X Y Z Total
from point charges -13.054 9.633 -14.962 22.070
hybrid contribution 0.092 -0.171 1.991 2.001
sum -12.962 9.461 -12.971 20.634
Atomic orbital electron populations
1.21731 0.93102 1.01873 1.02405 1.21211 0.97425 0.98102 0.94566
1.21879 1.02430 0.92003 1.03256 1.21871 1.02434 0.99864 0.95354
1.25117 0.90902 0.73990 0.85458 1.90383 1.60069 1.40293 1.46130
1.22305 0.95188 1.03926 0.99134 1.21827 0.87772 0.99934 0.96506
1.62028 1.08564 1.28764 1.27469 1.22263 0.94088 0.89280 1.01457
1.21600 0.95332 1.00559 0.97357 1.21472 1.02004 0.96396 0.94501
1.18583 0.89816 0.93665 0.94465 0.98248 1.21547 0.93177 1.44237
0.98827 0.93503 1.25697 0.96107 0.95627 1.00921 1.70030 0.99959
1.49209 1.36015 0.85567 0.78092 0.78061 0.80297 1.19517 1.20452
1.20380 1.21979 0.98391 0.97252 0.87106 0.93568 0.89822 0.93520
0.90452 0.89552 0.93071 0.93035 0.89597 0.90480 0.86019 0.85693
0.92007 0.96396 0.95927 0.87450 0.90755 0.92683 0.92210 0.96156
0.92975 0.93246 0.97089
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.15 7.76 71.98 0.56 -1.59 16
2 C -0.11 -1.69 0.87 -52.93 -0.05 -1.73 16
3 C -0.14 -1.52 8.26 71.98 0.59 -0.93 16
4 C -0.14 -1.56 8.25 71.98 0.59 -0.96 16
5 C 0.37 8.21 5.97 29.10 0.17 8.39 16
6 O -0.49 -15.13 15.60 -1.44 -0.02 -15.15 16
7 C -0.17 -3.62 4.22 29.85 0.13 -3.50 16
8 C 0.07 2.11 4.56 86.30 0.39 2.51 16
9 N -0.54 -19.89 4.80 -896.37 -4.31 -24.20 16
10 C 0.06 1.79 4.85 86.32 0.42 2.21 16
11 C -0.11 -4.10 6.09 30.64 0.19 -3.91 16
12 C -0.11 -5.10 5.02 30.67 0.15 -4.94 16
13 C 0.05 2.81 2.26 -11.49 -0.03 2.78 16
14 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16
15 C -0.54 -30.94 8.56 25.60 0.22 -30.72 16
16 H 0.05 2.67 7.74 -2.91 -0.02 2.65 16
17 C 0.02 0.87 5.30 84.66 0.45 1.32 16
18 N -0.91 -53.47 11.35 21.45 0.24 -53.23 16
19 Si 0.95 44.63 29.54 68.60 2.03 46.65 16
20 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16
21 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16
22 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16
23 C 0.08 3.63 4.65 86.33 0.40 4.03 16
24 H 0.05 0.85 8.10 -2.39 -0.02 0.83 16
25 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16
26 H 0.05 0.86 8.10 -2.39 -0.02 0.85 16
27 H 0.08 0.69 7.28 -2.39 -0.02 0.68 16
28 H 0.09 0.65 8.14 -2.38 -0.02 0.63 16
29 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16
30 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16
31 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16
32 H 0.08 0.73 7.28 -2.39 -0.02 0.72 16
33 H 0.12 2.12 5.44 -2.39 -0.01 2.11 16
34 H 0.13 2.30 7.38 -2.39 -0.02 2.28 16
35 H 0.06 2.08 8.10 -2.39 -0.02 2.06 16
36 H 0.02 0.61 8.04 -2.39 -0.02 0.59 16
37 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16
38 H 0.11 2.49 5.82 -2.39 -0.01 2.48 16
39 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16
40 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16
41 H 0.06 3.25 6.15 -2.39 -0.01 3.24 16
42 H 0.02 0.97 8.14 -2.38 -0.02 0.95 16
43 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16
44 H 0.05 2.27 8.12 -2.39 -0.02 2.25 16
45 H 0.01 0.50 8.14 -2.38 -0.02 0.48 16
Total: -1.00 -67.32 344.69 3.06 -64.26
By element:
Atomic # 1 Polarization: 7.80 SS G_CDS: 0.92 Total: 8.72 kcal
Atomic # 6 Polarization: -31.25 SS G_CDS: 4.20 Total: -27.05 kcal
Atomic # 7 Polarization: -73.37 SS G_CDS: -4.06 Total: -77.43 kcal
Atomic # 8 Polarization: -15.13 SS G_CDS: -0.02 Total: -15.15 kcal
Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal
Total: -67.32 3.06 -64.26 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000852319318.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -13.682 kcal
(2) G-P(sol) polarization free energy of solvation -67.318 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.000 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.062 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.256 kcal
(6) G-S(sol) free energy of system = (1) + (5) -77.938 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds