Wall clock time and date at job start Mon Mar 30 2020 09:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47103 * 2 1 4 4 C 1.53004 * 109.46702 * 119.99913 * 2 1 3 5 5 C 1.50688 * 109.47414 * 64.99950 * 4 2 1 6 6 O 1.20767 * 120.00001 * 0.02562 * 5 4 2 7 7 C 1.50706 * 120.00189 * 179.97438 * 5 4 2 8 8 C 1.53001 * 109.47247 * 180.02562 * 7 5 4 9 9 N 1.46900 * 109.47047 * 180.02562 * 8 7 5 10 10 C 1.46929 * 110.98461 * 294.22754 * 9 8 7 11 11 C 1.53037 * 109.47910 * 174.18240 * 10 9 8 12 12 C 1.53114 * 109.31211 * 59.15772 * 11 10 9 13 13 C 1.53126 * 109.16239 * 302.32855 * 12 11 10 14 14 H 1.09006 * 109.49902 * 297.71480 * 13 12 11 15 15 C 1.50701 * 109.50380 * 177.59650 * 13 12 11 16 16 H 1.08000 * 119.99638 * 239.99600 * 15 13 12 17 17 C 1.37877 * 120.00105 * 59.99644 * 15 13 12 18 18 N 1.31517 * 119.99918 * 0.02562 * 17 15 13 19 19 Si 1.86798 * 119.99983 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47105 * 90.00085 * 19 17 15 21 21 H 1.48493 * 109.47422 * 210.00423 * 19 17 15 22 22 H 1.48501 * 109.47206 * 330.00413 * 19 17 15 23 23 C 1.46850 * 110.99740 * 169.99968 * 9 8 7 24 24 H 1.09003 * 109.47298 * 300.00488 * 1 2 3 25 25 H 1.08997 * 109.46772 * 60.00486 * 1 2 3 26 26 H 1.09003 * 109.46911 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47306 * 239.99514 * 2 1 3 28 28 H 1.09007 * 109.47029 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.47254 * 299.99385 * 3 2 1 30 30 H 1.09003 * 109.47442 * 59.99600 * 3 2 1 31 31 H 1.09005 * 109.46990 * 304.99334 * 4 2 1 32 32 H 1.09008 * 109.46605 * 185.00068 * 4 2 1 33 33 H 1.09001 * 109.47060 * 60.00185 * 7 5 4 34 34 H 1.09000 * 109.46798 * 300.00354 * 7 5 4 35 35 H 1.09001 * 109.47127 * 59.99996 * 8 7 5 36 36 H 1.08999 * 109.46914 * 300.00151 * 8 7 5 37 37 H 1.08994 * 109.51866 * 54.15475 * 10 9 8 38 38 H 1.09007 * 109.45009 * 294.16157 * 10 9 8 39 39 H 1.09002 * 109.50283 * 299.19589 * 11 10 9 40 40 H 1.09003 * 109.50113 * 179.11776 * 11 10 9 41 41 H 1.09006 * 109.52545 * 62.23190 * 12 11 10 42 42 H 1.08997 * 109.52864 * 182.35913 * 12 11 10 43 43 H 0.97000 * 119.99592 * 179.97438 * 18 17 15 44 44 H 1.08997 * 109.46198 * 65.82029 * 23 9 8 45 45 H 1.08999 * 109.45191 * 305.84745 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6413 -2.1732 1.1890 6 8 1.0144 -2.5885 0.2441 7 6 2.0259 -3.1073 2.3074 8 6 1.5033 -4.5123 2.0009 9 7 1.8777 -5.4227 3.0913 10 6 3.3356 -5.5924 3.1579 11 6 3.6965 -6.4269 4.3890 12 6 3.0082 -7.7914 4.2953 13 6 1.4956 -7.5844 4.1782 14 1 1.1259 -7.0870 5.0750 15 6 0.8151 -8.9204 4.0262 16 1 0.2259 -9.1291 3.1455 17 6 0.9448 -9.8762 5.0114 18 7 1.6620 -9.6218 6.0841 19 14 0.1008 -11.5320 4.8232 20 1 1.0140 -12.4774 4.1322 21 1 -0.2434 -12.0675 6.1648 22 1 -1.1392 -11.3674 4.0229 23 6 1.1976 -6.7168 2.9532 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 3.1301 1.4424 -0.0005 29 1 1.6768 1.9563 -0.8901 30 1 1.6767 1.9564 0.8900 31 1 1.6054 -0.2616 2.1370 32 1 3.1263 -0.6443 1.2952 33 1 1.5909 -2.7534 3.2421 34 1 3.1116 -3.1359 2.3997 35 1 1.9386 -4.8659 1.0662 36 1 0.4177 -4.4839 1.9082 37 1 3.8132 -4.6152 3.2288 38 1 3.6832 -6.1020 2.2592 39 1 3.3615 -5.9113 5.2890 40 1 4.7768 -6.5663 4.4302 41 1 3.3721 -8.3234 3.4162 42 1 3.2290 -8.3730 5.1903 43 1 1.7529 -10.2941 6.7773 44 1 1.5552 -7.2210 2.0555 45 1 0.1225 -6.5554 2.8753 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852319678.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 09:18:27 Heat of formation + Delta-G solvation = -66.198001 kcal Electronic energy + Delta-G solvation = -20660.164417 eV Core-core repulsion = 17676.423271 eV Total energy + Delta-G solvation = -2983.741146 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.96127 -38.14067 -35.80393 -34.14865 -32.20980 -30.58729 -29.74111 -28.15882 -27.32942 -24.95081 -24.07313 -21.73422 -21.32479 -20.18940 -19.33922 -18.57986 -16.63699 -16.12924 -15.94801 -15.29757 -14.87818 -14.63984 -14.36689 -13.95956 -13.75084 -13.42736 -13.05239 -12.88257 -12.56225 -12.46046 -12.37324 -12.19046 -12.08238 -11.57743 -11.43709 -11.36184 -11.06447 -10.94156 -10.92495 -10.85636 -10.65410 -10.55655 -10.06671 -9.82701 -9.50450 -9.42952 -8.98726 -8.68272 -8.28175 -7.65677 -5.95399 -4.01306 1.94815 3.32448 3.39118 3.42616 3.82980 4.43932 4.52485 4.64332 4.66919 4.92223 5.02350 5.17923 5.26810 5.33007 5.34741 5.40288 5.44323 5.52934 5.65246 5.67098 5.72420 5.77247 5.81025 5.93473 6.08051 6.08925 6.11008 6.15867 6.18862 6.32997 6.44621 6.54147 6.72455 6.77550 6.99337 7.23730 7.41292 7.51239 7.67912 7.77689 7.84452 8.10875 8.19653 8.50866 9.02752 9.62875 11.10613 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.040700 B = 0.003252 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.800802 B = 8607.280546 C = 9080.694053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.089 4.089 3 C -0.147 4.147 4 C -0.168 4.168 5 C 0.356 3.644 6 O -0.451 6.451 7 C -0.169 4.169 8 C 0.064 3.936 9 N -0.540 5.540 10 C 0.059 3.941 11 C -0.117 4.117 12 C -0.111 4.111 13 C 0.055 3.945 14 H 0.034 0.966 15 C -0.514 4.514 16 H 0.053 0.947 17 C 0.062 3.938 18 N -0.889 5.889 19 Si 0.890 3.110 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.275 1.275 23 C 0.068 3.932 24 H 0.049 0.951 25 H 0.051 0.949 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.105 0.895 34 H 0.096 0.904 35 H 0.030 0.970 36 H 0.074 0.926 37 H 0.058 0.942 38 H 0.022 0.978 39 H 0.060 0.940 40 H 0.045 0.955 41 H 0.029 0.971 42 H 0.091 0.909 43 H 0.259 0.741 44 H 0.019 0.981 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.325 18.799 -7.883 20.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.107 4.107 3 C -0.205 4.205 4 C -0.206 4.206 5 C 0.231 3.769 6 O -0.325 6.325 7 C -0.207 4.207 8 C -0.064 4.064 9 N -0.264 5.264 10 C -0.069 4.069 11 C -0.155 4.155 12 C -0.149 4.149 13 C 0.036 3.964 14 H 0.052 0.948 15 C -0.553 4.553 16 H 0.071 0.929 17 C -0.139 4.139 18 N -0.528 5.528 19 Si 0.718 3.282 20 H -0.208 1.208 21 H -0.212 1.212 22 H -0.200 1.200 23 C -0.058 4.058 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.090 0.910 27 H 0.092 0.908 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.116 0.884 32 H 0.114 0.886 33 H 0.124 0.876 34 H 0.114 0.886 35 H 0.049 0.951 36 H 0.093 0.907 37 H 0.076 0.924 38 H 0.040 0.960 39 H 0.079 0.921 40 H 0.064 0.936 41 H 0.048 0.952 42 H 0.109 0.891 43 H 0.069 0.931 44 H 0.037 0.963 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.882 18.693 -7.778 20.451 hybrid contribution -0.023 -1.246 -0.725 1.442 sum 2.859 17.447 -8.503 19.618 Atomic orbital electron populations 1.21964 0.94836 1.03178 1.01197 1.20942 0.96563 0.95616 0.97623 1.21859 1.00833 0.95899 1.01888 1.22222 1.03148 0.94644 1.00570 1.24679 0.75532 0.90829 0.85876 1.90362 1.30307 1.78766 1.33055 1.22151 1.03369 0.95850 0.99295 1.21814 1.00838 0.91079 0.92676 1.62039 1.07343 1.13861 1.43161 1.22105 0.88192 0.98516 0.98049 1.21672 0.98423 0.98461 0.96933 1.21659 0.97545 0.93498 1.02235 1.18666 0.92356 0.93020 0.92331 0.94760 1.21163 1.30592 0.98826 1.04700 0.92854 1.24932 0.95313 0.98421 0.95196 1.69894 1.39981 1.34374 1.08552 0.86627 0.79945 0.84306 0.77300 1.20803 1.21249 1.19962 1.22304 0.96949 0.86949 0.99641 0.93147 0.92943 0.91041 0.90761 0.92716 0.92589 0.92611 0.88412 0.88588 0.87644 0.88598 0.95136 0.90747 0.92359 0.95962 0.92083 0.93600 0.95212 0.89087 0.93089 0.96298 0.92260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 8.94 37.16 0.33 -1.11 16 2 C -0.09 -0.76 2.57 -90.62 -0.23 -1.00 16 3 C -0.15 -0.99 9.19 37.16 0.34 -0.65 16 4 C -0.17 -1.35 5.11 -27.89 -0.14 -1.49 16 5 C 0.36 3.97 6.87 -29.04 -0.20 3.77 16 6 O -0.45 -6.50 13.59 5.99 0.08 -6.42 16 7 C -0.17 -1.98 5.57 -27.88 -0.16 -2.13 16 8 C 0.06 1.01 4.25 -3.82 -0.02 1.00 16 9 N -0.54 -10.00 4.66 -234.60 -1.09 -11.10 16 10 C 0.06 1.03 5.30 -3.79 -0.02 1.01 16 11 C -0.12 -2.27 6.09 -26.65 -0.16 -2.43 16 12 C -0.11 -2.65 5.02 -26.61 -0.13 -2.79 16 13 C 0.06 1.39 2.26 -91.69 -0.21 1.18 16 14 H 0.03 0.96 8.14 -51.93 -0.42 0.53 16 15 C -0.51 -14.27 8.56 -34.44 -0.29 -14.57 16 16 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 17 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 18 N -0.89 -25.49 11.35 55.43 0.63 -24.86 16 19 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 23 C 0.07 1.49 4.68 -3.83 -0.02 1.48 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.82 5.96 -51.93 -0.31 0.52 16 27 H 0.07 0.73 7.95 -51.93 -0.41 0.32 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.10 0.61 8.14 -51.92 -0.42 0.19 16 33 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.10 1.00 6.43 -51.93 -0.33 0.67 16 35 H 0.03 0.50 8.08 -51.93 -0.42 0.09 16 36 H 0.07 1.22 7.94 -51.93 -0.41 0.81 16 37 H 0.06 0.84 6.22 -51.93 -0.32 0.52 16 38 H 0.02 0.40 8.14 -51.92 -0.42 -0.03 16 39 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.09 2.42 6.15 -51.93 -0.32 2.10 16 43 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 44 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.06 1.29 8.01 -51.93 -0.42 0.88 16 LS Contribution 346.98 15.07 5.23 5.23 Total: -1.00 -29.54 346.98 -9.58 -39.13 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -8.41 Total: -2.35 kcal Atomic # 6 Polarization: -15.06 SS G_CDS: -1.00 Total: -16.07 kcal Atomic # 7 Polarization: -35.49 SS G_CDS: -0.46 Total: -35.96 kcal Atomic # 8 Polarization: -6.50 SS G_CDS: 0.08 Total: -6.42 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.54 -9.58 -39.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852319678.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.068 kcal (2) G-P(sol) polarization free energy of solvation -29.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds