Wall clock time and date at job start Mon Mar 30 2020 09:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.47083 * 2 1 4 4 C 1.52996 * 109.46823 * 120.00060 * 2 1 3 5 5 C 1.50701 * 109.47487 * 64.99880 * 4 2 1 6 6 O 1.20761 * 119.99952 * 359.97438 * 5 4 2 7 7 C 1.50703 * 120.00152 * 179.97438 * 5 4 2 8 8 C 1.53000 * 109.46912 * 180.02562 * 7 5 4 9 9 N 1.46901 * 109.46769 * 180.02562 * 8 7 5 10 10 C 1.46849 * 111.00372 * 45.78950 * 9 8 7 11 11 C 1.53032 * 109.52573 * 185.83873 * 10 9 8 12 12 C 1.53116 * 109.27926 * 300.82144 * 11 10 9 13 13 C 1.53126 * 109.16379 * 57.65237 * 12 11 10 14 14 H 1.08996 * 109.53138 * 62.30536 * 13 12 11 15 15 C 1.50694 * 109.50199 * 182.40730 * 13 12 11 16 16 H 1.08008 * 119.99870 * 119.80705 * 15 13 12 17 17 C 1.37873 * 120.00140 * 299.79891 * 15 13 12 18 18 N 1.31515 * 120.00185 * 0.02562 * 17 15 13 19 19 Si 1.86805 * 119.99990 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47164 * 90.00110 * 19 17 15 21 21 H 1.48507 * 109.47075 * 210.00122 * 19 17 15 22 22 H 1.48496 * 109.47042 * 330.00135 * 19 17 15 23 23 C 1.46852 * 110.99899 * 169.99926 * 9 8 7 24 24 H 1.09001 * 109.46944 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47220 * 300.00184 * 1 2 3 26 26 H 1.08992 * 109.46942 * 60.00346 * 1 2 3 27 27 H 1.08997 * 109.47220 * 239.99816 * 2 1 3 28 28 H 1.08991 * 109.47091 * 179.97438 * 3 2 1 29 29 H 1.09005 * 109.46989 * 299.99971 * 3 2 1 30 30 H 1.09007 * 109.47156 * 59.99827 * 3 2 1 31 31 H 1.09010 * 109.47344 * 304.99832 * 4 2 1 32 32 H 1.09001 * 109.47474 * 185.00224 * 4 2 1 33 33 H 1.09002 * 109.47152 * 60.00224 * 7 5 4 34 34 H 1.09001 * 109.46980 * 300.00325 * 7 5 4 35 35 H 1.09001 * 109.47194 * 299.99742 * 8 7 5 36 36 H 1.08992 * 109.47399 * 59.99914 * 8 7 5 37 37 H 1.09000 * 109.45708 * 305.85621 * 10 9 8 38 38 H 1.09002 * 109.46385 * 65.82019 * 10 9 8 39 39 H 1.08996 * 109.50669 * 180.87260 * 11 10 9 40 40 H 1.09005 * 109.53557 * 60.77369 * 11 10 9 41 41 H 1.08998 * 109.52308 * 297.74927 * 12 11 10 42 42 H 1.08999 * 109.57790 * 177.59135 * 12 11 10 43 43 H 0.96995 * 119.99880 * 180.02562 * 18 17 15 44 44 H 1.08998 * 109.46138 * 294.17265 * 23 9 8 45 45 H 1.08998 * 109.46453 * 54.15252 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 -2.1733 1.1889 6 8 1.0136 -2.5884 0.2445 7 6 2.0259 -3.1074 2.3073 8 6 1.5033 -4.5124 2.0007 9 7 1.8777 -5.4227 3.0911 10 6 1.6044 -4.8163 4.4003 11 6 2.1385 -5.7276 5.5076 12 6 1.4601 -7.0966 5.4068 13 6 1.7196 -7.6851 4.0172 14 1 2.7903 -7.8349 3.8790 15 6 1.0059 -9.0061 3.8890 16 1 0.2549 -9.1422 3.1248 17 6 1.3118 -10.0410 4.7470 18 7 2.2260 -9.8752 5.6778 19 14 0.4276 -11.6788 4.5876 20 1 1.1789 -12.5584 3.6566 21 1 0.3423 -12.3272 5.9210 22 1 -0.9415 -11.4528 4.0587 23 6 1.1976 -6.7169 2.9531 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6053 -0.2617 2.1370 32 1 3.1263 -0.6444 1.2953 33 1 1.5910 -2.7536 3.2420 34 1 3.1116 -3.1360 2.3996 35 1 0.4176 -4.4840 1.9081 36 1 1.9385 -4.8660 1.0661 37 1 2.0960 -3.8453 4.4604 38 1 0.5291 -4.6871 4.5234 39 1 1.9218 -5.2847 6.4797 40 1 3.2161 -5.8464 5.3939 41 1 0.3869 -6.9834 5.5598 42 1 1.8680 -7.7632 6.1666 43 1 2.4414 -10.6034 6.2812 44 1 0.1243 -6.5788 3.0829 45 1 1.3939 -7.1265 1.9622 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852319679.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 09:18:31 Heat of formation + Delta-G solvation = -63.077727 kcal Electronic energy + Delta-G solvation = -20702.799585 eV Core-core repulsion = 17719.193744 eV Total energy + Delta-G solvation = -2983.605841 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.00342 -38.19498 -35.81722 -34.20330 -32.17329 -30.64725 -29.70527 -28.13236 -27.34420 -25.00060 -24.13586 -21.75995 -21.38278 -20.13465 -19.26719 -18.60673 -16.67947 -16.14698 -15.96823 -15.33582 -14.91125 -14.60799 -14.33024 -14.07043 -13.75353 -13.38485 -13.16481 -12.77732 -12.57979 -12.50523 -12.37241 -12.20427 -12.08782 -11.53414 -11.45854 -11.31075 -11.07772 -11.03952 -10.93470 -10.91523 -10.64850 -10.52848 -10.07970 -9.83078 -9.46128 -9.43011 -8.99829 -8.67787 -8.27862 -7.63844 -5.95321 -4.01164 1.92958 3.32696 3.39162 3.42557 3.81913 4.43782 4.50986 4.63493 4.65787 4.90316 4.98728 5.11755 5.28046 5.30315 5.34859 5.38562 5.42424 5.48252 5.63662 5.65464 5.69289 5.74504 5.80068 5.92613 6.05066 6.08880 6.10245 6.17187 6.18748 6.30419 6.44712 6.54314 6.72250 6.77249 6.99821 7.23590 7.40959 7.49446 7.68037 7.77763 7.84584 8.11147 8.19643 8.50998 9.02929 9.63020 11.10788 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.043773 B = 0.003243 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.512118 B = 8630.629508 C = 9036.485961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.089 4.089 3 C -0.147 4.147 4 C -0.168 4.168 5 C 0.356 3.644 6 O -0.450 6.450 7 C -0.176 4.176 8 C 0.065 3.935 9 N -0.539 5.539 10 C 0.055 3.945 11 C -0.117 4.117 12 C -0.111 4.111 13 C 0.055 3.945 14 H 0.034 0.966 15 C -0.514 4.514 16 H 0.053 0.947 17 C 0.063 3.937 18 N -0.889 5.889 19 Si 0.890 3.110 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.275 1.275 23 C 0.068 3.932 24 H 0.070 0.930 25 H 0.049 0.951 26 H 0.052 0.948 27 H 0.075 0.925 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.105 0.895 35 H 0.031 0.969 36 H 0.075 0.925 37 H 0.062 0.938 38 H 0.021 0.979 39 H 0.045 0.955 40 H 0.060 0.940 41 H 0.029 0.971 42 H 0.091 0.909 43 H 0.259 0.741 44 H 0.019 0.981 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.493 20.179 -5.812 21.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.107 4.107 3 C -0.205 4.205 4 C -0.206 4.206 5 C 0.231 3.769 6 O -0.323 6.323 7 C -0.213 4.213 8 C -0.063 4.063 9 N -0.264 5.264 10 C -0.073 4.073 11 C -0.155 4.155 12 C -0.149 4.149 13 C 0.036 3.964 14 H 0.052 0.948 15 C -0.553 4.553 16 H 0.071 0.929 17 C -0.139 4.139 18 N -0.528 5.528 19 Si 0.718 3.282 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.200 1.200 23 C -0.059 4.059 24 H 0.089 0.911 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.093 0.907 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.114 0.886 32 H 0.116 0.884 33 H 0.117 0.883 34 H 0.124 0.876 35 H 0.049 0.951 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.040 0.960 39 H 0.064 0.936 40 H 0.079 0.921 41 H 0.048 0.952 42 H 0.109 0.891 43 H 0.069 0.931 44 H 0.037 0.963 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.737 19.767 -6.201 20.730 hybrid contribution -1.285 -0.706 0.159 1.474 sum -0.547 19.061 -6.042 20.003 Atomic orbital electron populations 1.21963 0.94901 1.03130 1.01184 1.20942 0.96498 0.95647 0.97662 1.21857 1.00883 0.95868 1.01868 1.22222 1.03262 0.94581 1.00507 1.24667 0.75562 0.90819 0.85896 1.90364 1.30207 1.78747 1.32998 1.22309 1.04258 0.95859 0.98896 1.21859 0.98110 0.90519 0.95842 1.62118 1.59162 1.03944 1.01154 1.22166 0.97617 0.97318 0.90178 1.21674 1.00972 0.97621 0.95254 1.21655 0.97470 0.93306 1.02498 1.18663 0.97171 0.91229 0.89327 0.94753 1.21161 1.21650 0.96616 1.15858 0.92859 1.24931 0.95119 0.98509 0.95295 1.69891 1.31831 1.32094 1.18987 0.86629 0.80121 0.84159 0.77281 1.20698 1.21282 1.20026 1.22309 0.94589 0.87891 1.01075 0.91090 0.93214 0.92907 0.90660 0.92659 0.92566 0.92663 0.88562 0.88441 0.88276 0.87641 0.95056 0.90685 0.91941 0.96028 0.93596 0.92080 0.95213 0.89114 0.93085 0.96279 0.92254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 8.93 37.16 0.33 -1.10 16 2 C -0.09 -0.76 2.57 -90.62 -0.23 -0.99 16 3 C -0.15 -0.98 9.19 37.16 0.34 -0.64 16 4 C -0.17 -1.33 5.11 -27.88 -0.14 -1.47 16 5 C 0.36 3.95 6.88 -29.03 -0.20 3.75 16 6 O -0.45 -6.46 13.59 6.00 0.08 -6.38 16 7 C -0.18 -2.03 4.89 -27.88 -0.14 -2.17 16 8 C 0.06 1.02 4.56 -3.82 -0.02 1.00 16 9 N -0.54 -10.03 4.81 -234.67 -1.13 -11.16 16 10 C 0.06 0.94 4.85 -3.84 -0.02 0.92 16 11 C -0.12 -2.26 6.09 -26.65 -0.16 -2.43 16 12 C -0.11 -2.65 5.03 -26.61 -0.13 -2.78 16 13 C 0.05 1.39 2.26 -91.69 -0.21 1.19 16 14 H 0.03 0.96 8.14 -51.93 -0.42 0.54 16 15 C -0.51 -14.30 8.56 -34.44 -0.29 -14.59 16 16 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 17 C 0.06 1.75 5.31 -17.82 -0.09 1.65 16 18 N -0.89 -25.53 11.36 55.43 0.63 -24.90 16 19 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 C 0.07 1.50 4.65 -3.83 -0.02 1.48 16 24 H 0.07 0.82 5.96 -51.93 -0.31 0.51 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.07 0.74 7.96 -51.93 -0.41 0.32 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.10 0.63 8.14 -51.92 -0.42 0.20 16 32 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.10 1.03 6.21 -51.93 -0.32 0.71 16 34 H 0.11 1.12 8.14 -51.93 -0.42 0.69 16 35 H 0.03 0.53 8.04 -51.93 -0.42 0.11 16 36 H 0.07 1.23 8.10 -51.93 -0.42 0.81 16 37 H 0.06 0.87 5.81 -51.93 -0.30 0.57 16 38 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.09 2.41 6.16 -51.93 -0.32 2.09 16 43 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.06 1.30 8.12 -51.93 -0.42 0.88 16 LS Contribution 345.89 15.07 5.21 5.21 Total: -1.00 -29.70 345.89 -9.60 -39.29 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -8.39 Total: -2.36 kcal Atomic # 6 Polarization: -15.19 SS G_CDS: -0.98 Total: -16.18 kcal Atomic # 7 Polarization: -35.55 SS G_CDS: -0.50 Total: -36.05 kcal Atomic # 8 Polarization: -6.46 SS G_CDS: 0.08 Total: -6.38 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.70 -9.60 -39.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852319679.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.787 kcal (2) G-P(sol) polarization free energy of solvation -29.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds