Wall clock time and date at job start Mon Mar 30 2020 09:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.47083 * 2 1 4 4 C 1.52996 * 109.46823 * 120.00060 * 2 1 3 5 5 C 1.50701 * 109.47487 * 64.99880 * 4 2 1 6 6 O 1.20761 * 119.99952 * 359.97438 * 5 4 2 7 7 C 1.50703 * 120.00152 * 179.97438 * 5 4 2 8 8 C 1.53000 * 109.46912 * 180.02562 * 7 5 4 9 9 N 1.46901 * 109.46769 * 180.02562 * 8 7 5 10 10 C 1.46849 * 111.00372 * 45.78950 * 9 8 7 11 11 C 1.53032 * 109.52573 * 185.83873 * 10 9 8 12 12 C 1.53116 * 109.27926 * 300.82144 * 11 10 9 13 13 C 1.53126 * 109.16379 * 57.65237 * 12 11 10 14 14 H 1.08996 * 109.53138 * 62.30536 * 13 12 11 15 15 C 1.50694 * 109.50199 * 182.40730 * 13 12 11 16 16 H 1.08008 * 119.99870 * 119.80705 * 15 13 12 17 17 C 1.37873 * 120.00140 * 299.79891 * 15 13 12 18 18 N 1.31515 * 120.00185 * 0.02562 * 17 15 13 19 19 Si 1.86805 * 119.99990 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47164 * 90.00110 * 19 17 15 21 21 H 1.48507 * 109.47075 * 210.00122 * 19 17 15 22 22 H 1.48496 * 109.47042 * 330.00135 * 19 17 15 23 23 C 1.46852 * 110.99899 * 169.99926 * 9 8 7 24 24 H 1.09001 * 109.46944 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47220 * 300.00184 * 1 2 3 26 26 H 1.08992 * 109.46942 * 60.00346 * 1 2 3 27 27 H 1.08997 * 109.47220 * 239.99816 * 2 1 3 28 28 H 1.08991 * 109.47091 * 179.97438 * 3 2 1 29 29 H 1.09005 * 109.46989 * 299.99971 * 3 2 1 30 30 H 1.09007 * 109.47156 * 59.99827 * 3 2 1 31 31 H 1.09010 * 109.47344 * 304.99832 * 4 2 1 32 32 H 1.09001 * 109.47474 * 185.00224 * 4 2 1 33 33 H 1.09002 * 109.47152 * 60.00224 * 7 5 4 34 34 H 1.09001 * 109.46980 * 300.00325 * 7 5 4 35 35 H 1.09001 * 109.47194 * 299.99742 * 8 7 5 36 36 H 1.08992 * 109.47399 * 59.99914 * 8 7 5 37 37 H 1.09000 * 109.45708 * 305.85621 * 10 9 8 38 38 H 1.09002 * 109.46385 * 65.82019 * 10 9 8 39 39 H 1.08996 * 109.50669 * 180.87260 * 11 10 9 40 40 H 1.09005 * 109.53557 * 60.77369 * 11 10 9 41 41 H 1.08998 * 109.52308 * 297.74927 * 12 11 10 42 42 H 1.08999 * 109.57790 * 177.59135 * 12 11 10 43 43 H 0.96995 * 119.99880 * 180.02562 * 18 17 15 44 44 H 1.08998 * 109.46138 * 294.17265 * 23 9 8 45 45 H 1.08998 * 109.46453 * 54.15252 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 -2.1733 1.1889 6 8 1.0136 -2.5884 0.2445 7 6 2.0259 -3.1074 2.3073 8 6 1.5033 -4.5124 2.0007 9 7 1.8777 -5.4227 3.0911 10 6 1.6044 -4.8163 4.4003 11 6 2.1385 -5.7276 5.5076 12 6 1.4601 -7.0966 5.4068 13 6 1.7196 -7.6851 4.0172 14 1 2.7903 -7.8349 3.8790 15 6 1.0059 -9.0061 3.8890 16 1 0.2549 -9.1422 3.1248 17 6 1.3118 -10.0410 4.7470 18 7 2.2260 -9.8752 5.6778 19 14 0.4276 -11.6788 4.5876 20 1 1.1789 -12.5584 3.6566 21 1 0.3423 -12.3272 5.9210 22 1 -0.9415 -11.4528 4.0587 23 6 1.1976 -6.7169 2.9531 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6053 -0.2617 2.1370 32 1 3.1263 -0.6444 1.2953 33 1 1.5910 -2.7536 3.2420 34 1 3.1116 -3.1360 2.3996 35 1 0.4176 -4.4840 1.9081 36 1 1.9385 -4.8660 1.0661 37 1 2.0960 -3.8453 4.4604 38 1 0.5291 -4.6871 4.5234 39 1 1.9218 -5.2847 6.4797 40 1 3.2161 -5.8464 5.3939 41 1 0.3869 -6.9834 5.5598 42 1 1.8680 -7.7632 6.1666 43 1 2.4414 -10.6034 6.2812 44 1 0.1243 -6.5788 3.0829 45 1 1.3939 -7.1265 1.9622 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852319679.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 09:18:30 Heat of formation + Delta-G solvation = -80.080135 kcal Electronic energy + Delta-G solvation = -20703.536864 eV Core-core repulsion = 17719.193744 eV Total energy + Delta-G solvation = -2984.343120 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.95587 -39.72213 -36.54056 -35.90757 -33.93722 -32.05538 -31.30368 -29.05584 -27.95505 -26.94821 -25.54615 -23.43883 -22.70302 -21.03841 -20.36957 -20.15288 -18.45691 -17.44738 -16.87773 -16.68305 -16.34401 -15.92184 -15.58290 -15.13135 -15.03754 -14.84551 -14.52511 -14.15826 -13.98967 -13.88050 -13.41619 -13.10020 -13.00413 -12.87055 -12.84879 -12.69597 -12.60706 -12.41943 -12.13190 -12.02759 -11.73864 -11.72119 -11.67777 -11.54405 -11.37245 -10.84876 -10.66382 -10.37990 -10.33112 -9.16657 -8.09506 -6.23588 1.09756 1.39891 1.40224 1.50605 2.41282 2.84621 3.17181 3.37604 3.85292 3.90719 4.03432 4.11170 4.19674 4.25518 4.34507 4.40095 4.53614 4.62308 4.64548 4.72902 4.75958 4.78417 4.83425 4.88055 4.89119 4.93838 4.98452 5.05679 5.06274 5.12433 5.16060 5.18682 5.33745 5.41727 5.45930 5.50773 5.52128 5.62655 5.95530 6.11403 6.19168 6.32751 6.44710 6.68092 6.88374 7.44041 8.95173 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.043773 B = 0.003243 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.512118 B = 8630.629508 C = 9036.485961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.091 4.091 3 C -0.143 4.143 4 C -0.161 4.161 5 C 0.359 3.641 6 O -0.491 6.491 7 C -0.170 4.170 8 C 0.067 3.933 9 N -0.545 5.545 10 C 0.057 3.943 11 C -0.111 4.111 12 C -0.106 4.106 13 C 0.054 3.946 14 H -0.001 1.001 15 C -0.540 4.540 16 H 0.047 0.953 17 C 0.015 3.985 18 N -0.914 5.914 19 Si 0.954 3.046 20 H -0.275 1.275 21 H -0.280 1.280 22 H -0.271 1.271 23 C 0.081 3.919 24 H 0.043 0.957 25 H 0.061 0.939 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.064 0.936 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.121 0.879 32 H 0.122 0.878 33 H 0.121 0.879 34 H 0.124 0.876 35 H 0.017 0.983 36 H 0.061 0.939 37 H 0.109 0.891 38 H 0.022 0.978 39 H 0.073 0.927 40 H 0.054 0.946 41 H 0.020 0.980 42 H 0.059 0.941 43 H 0.261 0.739 44 H 0.010 0.990 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.806 22.481 -5.198 23.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.110 4.110 3 C -0.200 4.200 4 C -0.198 4.198 5 C 0.237 3.763 6 O -0.367 6.367 7 C -0.207 4.207 8 C -0.061 4.061 9 N -0.270 5.270 10 C -0.071 4.071 11 C -0.149 4.149 12 C -0.144 4.144 13 C 0.035 3.965 14 H 0.017 0.983 15 C -0.578 4.578 16 H 0.065 0.935 17 C -0.184 4.184 18 N -0.553 5.553 19 Si 0.779 3.221 20 H -0.201 1.201 21 H -0.205 1.205 22 H -0.196 1.196 23 C -0.047 4.047 24 H 0.063 0.937 25 H 0.080 0.920 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.139 0.861 32 H 0.140 0.860 33 H 0.139 0.861 34 H 0.142 0.858 35 H 0.036 0.964 36 H 0.080 0.920 37 H 0.127 0.873 38 H 0.040 0.960 39 H 0.092 0.908 40 H 0.073 0.927 41 H 0.039 0.961 42 H 0.077 0.923 43 H 0.070 0.930 44 H 0.029 0.971 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.058 22.090 -5.585 22.809 hybrid contribution -1.371 -1.433 -0.049 1.984 sum -0.313 20.657 -5.634 21.413 Atomic orbital electron populations 1.21948 0.95796 1.01532 1.01891 1.20947 0.95784 0.96902 0.97349 1.21812 1.01464 0.94318 1.02383 1.22251 1.04837 0.91730 1.01012 1.25051 0.74245 0.92255 0.84756 1.90379 1.32212 1.79652 1.34486 1.22311 1.05338 0.92949 1.00067 1.21837 0.97394 0.92535 0.94336 1.62045 1.58677 1.03290 1.02942 1.22260 0.98107 0.98485 0.88218 1.21599 1.00021 0.95415 0.97838 1.21475 0.97051 0.95599 1.00291 1.18577 0.94691 0.91668 0.91567 0.98312 1.21521 1.21989 0.98357 1.15976 0.93489 1.25699 0.95835 1.01902 0.94918 1.70023 1.32763 1.33067 1.19430 0.85628 0.79047 0.79905 0.77497 1.20115 1.20545 1.19575 1.21971 0.94065 0.89423 0.99233 0.93748 0.91959 0.92799 0.92610 0.91683 0.92675 0.91582 0.86142 0.85978 0.86125 0.85766 0.96427 0.92039 0.87336 0.95958 0.90796 0.92724 0.96150 0.92271 0.92957 0.97136 0.93276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 8.93 71.98 0.64 -2.04 16 2 C -0.09 -1.37 2.57 -10.79 -0.03 -1.39 16 3 C -0.14 -1.47 9.19 71.98 0.66 -0.81 16 4 C -0.16 -1.98 5.11 29.85 0.15 -1.83 16 5 C 0.36 7.21 6.88 29.10 0.20 7.41 16 6 O -0.49 -13.99 13.59 -1.45 -0.02 -14.01 16 7 C -0.17 -3.40 4.89 29.85 0.15 -3.25 16 8 C 0.07 2.04 4.56 86.30 0.39 2.44 16 9 N -0.54 -19.83 4.81 -896.37 -4.31 -24.14 16 10 C 0.06 1.79 4.85 86.32 0.42 2.21 16 11 C -0.11 -4.12 6.09 30.64 0.19 -3.93 16 12 C -0.11 -5.13 5.03 30.67 0.15 -4.98 16 13 C 0.05 2.82 2.26 -11.49 -0.03 2.80 16 14 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 15 C -0.54 -31.00 8.56 25.60 0.22 -30.78 16 16 H 0.05 2.68 7.74 -2.91 -0.02 2.65 16 17 C 0.02 0.87 5.31 84.65 0.45 1.32 16 18 N -0.91 -53.70 11.36 21.45 0.24 -53.45 16 19 Si 0.95 44.66 29.54 68.60 2.03 46.69 16 20 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 21 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 22 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 23 C 0.08 3.64 4.65 86.32 0.40 4.04 16 24 H 0.04 1.01 5.96 -2.39 -0.01 1.00 16 25 H 0.06 0.89 8.14 -2.39 -0.02 0.88 16 26 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.06 1.05 7.96 -2.39 -0.02 1.03 16 28 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 30 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 31 H 0.12 0.98 8.14 -2.38 -0.02 0.96 16 32 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.12 1.93 6.21 -2.39 -0.01 1.92 16 34 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.02 0.59 8.04 -2.39 -0.02 0.57 16 36 H 0.06 2.03 8.10 -2.39 -0.02 2.01 16 37 H 0.11 2.49 5.81 -2.39 -0.01 2.48 16 38 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.05 2.10 8.14 -2.38 -0.02 2.08 16 41 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.06 3.23 6.16 -2.39 -0.01 3.21 16 43 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 44 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 45 H 0.05 2.25 8.12 -2.39 -0.02 2.23 16 Total: -1.00 -67.50 345.89 2.84 -64.66 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: 0.92 Total: 9.05 kcal Atomic # 6 Polarization: -32.78 SS G_CDS: 3.97 Total: -28.80 kcal Atomic # 7 Polarization: -73.53 SS G_CDS: -4.06 Total: -77.59 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: -0.02 Total: -14.01 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -67.50 2.84 -64.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852319679.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.417 kcal (2) G-P(sol) polarization free energy of solvation -67.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds