Wall clock time and date at job start Mon Mar 30 2020 07:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47009 * 2 1 4 4 C 1.53004 * 109.47309 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47309 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47009 * 180.02562 * 5 4 3 7 7 C 1.53007 * 109.47079 * 180.02562 * 6 5 4 8 8 H 1.09003 * 109.46748 * 305.00405 * 7 6 5 9 9 C 1.53004 * 109.46904 * 65.00034 * 7 6 5 10 10 C 1.50694 * 109.47297 * 185.00127 * 7 6 5 11 11 O 1.21284 * 120.00100 * 0.02562 * 10 7 6 12 12 N 1.34770 * 120.00190 * 179.97438 * 10 7 6 13 13 C 1.47586 * 134.49328 * 179.97438 * 12 10 7 14 14 C 1.53950 * 86.11354 * 155.35990 * 13 12 10 15 15 C 1.50706 * 113.73627 * 137.95493 * 14 13 12 16 16 H 1.07995 * 120.00167 * 1.64697 * 15 14 13 17 17 C 1.37879 * 119.99394 * 181.92396 * 15 14 13 18 18 N 1.31514 * 120.00338 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99424 * 180.02562 * 17 15 14 20 20 H 1.48490 * 109.47405 * 60.00219 * 19 17 15 21 21 H 1.48503 * 109.46845 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47399 * 299.99813 * 19 17 15 23 23 C 1.47813 * 134.45830 * 359.86765 * 12 10 7 24 24 H 1.09001 * 109.47453 * 59.99937 * 1 2 3 25 25 H 1.09006 * 109.46778 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47004 * 299.99369 * 1 2 3 27 27 H 1.09007 * 109.47164 * 240.00091 * 2 1 3 28 28 H 1.09001 * 109.47453 * 120.00063 * 2 1 3 29 29 H 1.08998 * 109.47140 * 60.00647 * 3 2 1 30 30 H 1.09000 * 109.47589 * 300.00308 * 3 2 1 31 31 H 1.09006 * 109.46576 * 60.00507 * 4 3 2 32 32 H 1.09000 * 109.47160 * 300.00710 * 4 3 2 33 33 H 1.09007 * 109.47083 * 60.00181 * 5 4 3 34 34 H 1.09001 * 109.47065 * 300.00440 * 5 4 3 35 35 H 1.09001 * 109.47203 * 60.00819 * 6 5 4 36 36 H 1.09001 * 109.47453 * 300.00063 * 6 5 4 37 37 H 1.08999 * 109.46644 * 180.02562 * 9 7 6 38 38 H 1.08998 * 109.46873 * 300.00207 * 9 7 6 39 39 H 1.09003 * 109.46831 * 60.00128 * 9 7 6 40 40 H 1.09008 * 113.76654 * 41.06222 * 13 12 10 41 41 H 1.08991 * 113.77014 * 269.66271 * 13 12 10 42 42 H 1.09000 * 113.74485 * 269.15566 * 14 13 12 43 43 H 0.96996 * 119.99730 * 179.97438 * 18 17 15 44 44 H 1.09002 * 113.76703 * 90.37825 * 23 12 10 45 45 H 1.08998 * 113.83277 * 318.91803 * 23 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0799 2.8851 0.0000 6 6 5.6099 2.8851 0.0000 7 6 6.1199 4.3276 0.0000 8 1 5.6852 4.8666 -0.8418 9 6 5.7152 5.0116 1.3074 10 6 7.6218 4.3295 -0.1239 11 8 8.2249 3.2803 -0.2047 12 7 8.2947 5.4970 -0.1458 13 6 9.7192 5.8679 -0.2523 14 6 9.2194 7.2105 -0.8157 15 6 9.9641 8.4072 -0.2822 16 1 10.7832 8.2698 0.4081 17 6 9.5958 9.6778 -0.6710 18 7 8.5945 9.8454 -1.5070 19 14 10.5193 11.1610 -0.0102 20 1 11.9494 11.0673 -0.3988 21 1 9.9323 12.4020 -0.5764 22 1 10.4098 11.1930 1.4705 23 6 7.9014 6.9200 -0.0750 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6766 1.9564 -0.8899 31 1 3.9336 0.9287 -0.8892 32 1 3.9330 0.9288 0.8908 33 1 3.7162 3.3994 0.8896 34 1 3.7169 3.3984 -0.8904 35 1 5.9733 2.3709 -0.8898 36 1 5.9733 2.3716 0.8902 37 1 6.0781 6.0394 1.3072 38 1 4.6289 5.0102 1.3969 39 1 6.1498 4.4725 2.1492 40 1 10.2764 5.2691 -0.9729 41 1 10.2234 5.9556 0.7100 42 1 9.1200 7.2212 -1.9011 43 1 8.3353 10.7393 -1.7801 44 1 7.8709 7.3174 0.9396 45 1 7.0098 7.1599 -0.6542 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855473158.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:39 Heat of formation + Delta-G solvation = -52.506585 kcal Electronic energy + Delta-G solvation = -20161.611470 eV Core-core repulsion = 17178.464029 eV Total energy + Delta-G solvation = -2983.147442 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.57822 -37.43710 -36.55958 -34.76271 -32.69251 -31.87484 -29.13262 -27.83248 -25.44771 -25.13173 -24.82471 -22.60356 -21.17884 -20.81558 -19.65659 -18.02590 -16.76070 -16.30882 -16.05081 -15.28746 -15.07344 -14.67348 -14.36212 -14.20494 -13.76005 -13.50612 -12.96746 -12.81981 -12.57063 -12.44782 -12.16756 -11.93727 -11.72141 -11.67213 -11.50178 -11.25476 -11.09797 -11.06616 -10.97634 -10.83357 -10.71528 -10.70677 -10.46876 -10.41029 -10.33506 -9.53175 -9.26721 -8.85181 -8.57492 -7.80675 -6.18441 -4.23909 3.24648 3.25381 3.30174 3.32446 3.64034 4.32895 4.51452 4.69997 4.83360 4.93753 4.98265 5.02165 5.12590 5.21371 5.29812 5.38445 5.45452 5.53165 5.59699 5.68425 5.72943 5.76971 5.84917 5.87682 5.96577 6.01414 6.05598 6.06383 6.13260 6.20694 6.23637 6.26180 6.31254 6.40402 6.46165 6.51241 6.60011 6.70118 6.85251 7.55147 7.79279 8.17091 8.57566 8.79039 8.83490 9.42754 10.91192 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.037649 B = 0.002909 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.527811 B = 9622.291806 C =10080.547788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.120 4.120 4 C -0.120 4.120 5 C -0.121 4.121 6 C -0.097 4.097 7 C -0.105 4.105 8 H 0.091 0.909 9 C -0.145 4.145 10 C 0.527 3.473 11 O -0.570 6.570 12 N -0.639 5.639 13 C 0.102 3.898 14 C 0.033 3.967 15 C -0.520 4.520 16 H 0.062 0.938 17 C 0.067 3.933 18 N -0.887 5.887 19 Si 0.895 3.105 20 H -0.275 1.275 21 H -0.287 1.287 22 H -0.276 1.276 23 C 0.107 3.893 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.055 0.945 40 H 0.059 0.941 41 H 0.072 0.928 42 H 0.063 0.937 43 H 0.264 0.736 44 H 0.074 0.926 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.023 -12.025 3.505 18.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.158 4.158 4 C -0.157 4.157 5 C -0.158 4.158 6 C -0.135 4.135 7 C -0.126 4.126 8 H 0.110 0.890 9 C -0.202 4.202 10 C 0.317 3.683 11 O -0.451 6.451 12 N -0.373 5.373 13 C -0.020 4.020 14 C 0.014 3.986 15 C -0.558 4.558 16 H 0.080 0.920 17 C -0.136 4.136 18 N -0.524 5.524 19 Si 0.723 3.277 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.201 1.201 23 C -0.015 4.015 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.090 0.910 42 H 0.081 0.919 43 H 0.074 0.926 44 H 0.092 0.908 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.925 -12.599 3.364 18.361 hybrid contribution 0.364 0.953 0.355 1.080 sum -12.561 -11.647 3.719 17.529 Atomic orbital electron populations 1.21783 0.96092 1.01404 1.01765 1.21550 0.95660 0.97228 1.01951 1.21635 0.95709 0.96468 1.01989 1.21603 0.94934 0.97102 1.02108 1.21675 0.95472 0.96569 1.02109 1.21376 0.94288 0.94669 1.03161 1.21211 0.92671 0.98422 1.00340 0.89045 1.21828 1.01475 1.01149 0.95760 1.20305 0.89411 0.82474 0.76139 1.90611 1.70671 1.31156 1.52614 1.50516 1.10468 1.06110 1.70180 1.23463 0.82274 0.96291 1.00007 1.20501 0.90767 0.90481 0.96865 1.20944 1.16936 0.90113 1.27782 0.91962 1.25020 0.94914 0.99141 0.94517 1.69937 1.27069 1.22842 1.32542 0.86603 0.80160 0.81673 0.79278 1.20074 1.21238 1.20108 1.23709 1.01715 0.75474 1.00633 0.92799 0.92967 0.92818 0.92113 0.92141 0.92116 0.92068 0.92041 0.92072 0.91761 0.92037 0.91374 0.91638 0.91514 0.91766 0.92608 0.92211 0.90956 0.91925 0.92604 0.90759 0.91821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.91 37.16 0.37 -0.68 16 2 C -0.13 -0.97 5.93 -26.73 -0.16 -1.12 16 3 C -0.12 -1.00 5.21 -26.73 -0.14 -1.14 16 4 C -0.12 -1.14 5.21 -26.73 -0.14 -1.28 16 5 C -0.12 -1.28 4.97 -26.73 -0.13 -1.42 16 6 C -0.10 -1.32 4.03 -26.73 -0.11 -1.43 16 7 C -0.11 -1.62 2.55 -91.77 -0.23 -1.85 16 8 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 9 C -0.14 -1.96 8.83 37.16 0.33 -1.64 16 10 C 0.53 10.49 7.38 -10.99 -0.08 10.41 16 11 O -0.57 -12.99 16.65 5.55 0.09 -12.90 16 12 N -0.64 -13.18 3.57 -178.21 -0.64 -13.82 16 13 C 0.10 2.16 8.39 -2.96 -0.02 2.13 16 14 C 0.03 0.77 3.60 -90.84 -0.33 0.45 16 15 C -0.52 -13.20 8.77 -34.44 -0.30 -13.51 16 16 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 17 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 18 N -0.89 -23.94 13.29 55.43 0.74 -23.20 16 19 Si 0.90 20.01 29.54 -169.99 -5.02 14.99 16 20 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 21 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 23 C 0.11 2.24 6.46 -2.83 -0.02 2.22 16 24 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.65 6.56 -51.93 -0.34 0.30 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 1.01 7.95 -51.93 -0.41 0.60 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.07 0.97 6.14 -51.93 -0.32 0.65 16 38 H 0.06 0.72 6.56 -51.93 -0.34 0.38 16 39 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.06 1.24 8.14 -51.92 -0.42 0.82 16 41 H 0.07 1.48 8.09 -51.93 -0.42 1.06 16 42 H 0.06 1.60 8.14 -51.93 -0.42 1.18 16 43 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 44 H 0.07 1.54 7.92 -51.93 -0.41 1.13 16 45 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 360.71 15.07 5.44 5.44 Total: -1.00 -28.12 360.71 -9.01 -37.13 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -8.55 Total: -0.44 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: -1.07 Total: -7.21 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: 0.10 Total: -37.02 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: 0.09 Total: -12.90 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -28.12 -9.01 -37.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855473158.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.374 kcal (2) G-P(sol) polarization free energy of solvation -28.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds