Wall clock time and date at job start Mon Mar 30 2020 07:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47375 * 2 1 4 4 C 1.52997 * 109.47375 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47113 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.46871 * 180.02562 * 5 4 3 7 7 H 1.08990 * 109.47355 * 304.99798 * 6 5 4 8 8 C 1.53005 * 109.47165 * 65.00306 * 6 5 4 9 9 C 1.53000 * 109.46776 * 184.99808 * 6 5 4 10 10 C 1.50703 * 109.46912 * 175.00090 * 9 6 5 11 11 O 1.21278 * 119.99985 * 359.97438 * 10 9 6 12 12 N 1.34777 * 120.00161 * 180.02562 * 10 9 6 13 13 C 1.47071 * 136.05157 * 359.62556 * 12 10 9 14 14 C 1.53762 * 87.88358 * 152.97035 * 13 12 10 15 15 C 1.50698 * 114.27040 * 139.79574 * 14 13 12 16 16 H 1.07999 * 119.99623 * 266.47690 * 15 14 13 17 17 C 1.37870 * 120.00348 * 86.46609 * 15 14 13 18 18 N 1.31516 * 120.00101 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00116 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46765 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47163 * 119.99956 * 19 17 15 22 22 H 1.48496 * 109.47152 * 240.00414 * 19 17 15 23 23 C 1.47065 * 136.06111 * 180.02562 * 12 10 9 24 24 H 1.09007 * 109.47177 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47223 * 299.99593 * 1 2 3 26 26 H 1.09001 * 109.47310 * 59.99552 * 1 2 3 27 27 H 1.09003 * 109.46752 * 240.00163 * 2 1 3 28 28 H 1.09001 * 109.47310 * 120.00448 * 2 1 3 29 29 H 1.09002 * 109.46613 * 60.00033 * 3 2 1 30 30 H 1.09001 * 109.47267 * 300.00475 * 3 2 1 31 31 H 1.09003 * 109.46752 * 60.00163 * 4 3 2 32 32 H 1.09001 * 109.47310 * 300.00448 * 4 3 2 33 33 H 1.08993 * 109.46856 * 60.00181 * 5 4 3 34 34 H 1.09001 * 109.46973 * 299.99788 * 5 4 3 35 35 H 1.09001 * 109.47099 * 179.97438 * 8 6 5 36 36 H 1.09004 * 109.46908 * 299.99702 * 8 6 5 37 37 H 1.09000 * 109.47443 * 59.99545 * 8 6 5 38 38 H 1.09002 * 109.47398 * 295.00168 * 9 6 5 39 39 H 1.09001 * 109.47194 * 55.00349 * 9 6 5 40 40 H 1.09001 * 113.46536 * 267.69429 * 13 12 10 41 41 H 1.08993 * 113.47241 * 38.14077 * 13 12 10 42 42 H 1.09002 * 114.38613 * 272.67249 * 14 13 12 43 43 H 0.97000 * 120.00007 * 179.97438 * 18 17 15 44 44 H 1.08997 * 113.46365 * 321.86138 * 23 12 10 45 45 H 1.08999 * 113.46854 * 92.24224 * 23 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0800 2.8850 0.0013 6 6 5.6100 2.8849 0.0013 7 1 5.9733 2.2951 0.8428 8 6 6.1200 2.2759 -1.3064 9 6 6.1200 4.3219 0.1276 10 6 7.6219 4.3128 0.2511 11 8 8.2250 3.2606 0.2397 12 7 8.2949 5.4739 0.3752 13 6 7.9439 6.9013 0.4238 14 6 9.2199 7.1284 1.2512 15 6 9.9746 8.3829 0.8941 16 1 10.7789 8.3428 0.1745 17 6 9.6382 9.5819 1.4858 18 7 8.6589 9.6307 2.3623 19 14 10.5733 11.1371 1.0425 20 1 11.6198 10.8162 0.0390 21 1 9.6323 12.1353 0.4739 22 1 11.2107 11.6959 2.2618 23 6 9.7039 5.8715 0.5146 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.8932 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.6767 1.9562 0.8900 30 1 1.6767 1.9563 -0.8899 31 1 3.9336 0.9285 -0.8892 32 1 3.9330 0.9287 0.8908 33 1 3.7163 3.3984 0.8912 34 1 3.7171 3.3990 -0.8887 35 1 7.2100 2.2763 -1.3066 36 1 5.7567 1.2521 -1.3964 37 1 5.7567 2.8657 -2.1480 38 1 5.8316 4.8889 -0.7575 39 1 5.6854 4.7851 1.0134 40 1 7.9669 7.3873 -0.5515 41 1 7.0256 7.1040 0.9749 42 1 9.0896 6.9950 2.3252 43 1 8.4224 10.4742 2.7788 44 1 10.2852 5.1968 1.1430 45 1 10.1908 6.0854 -0.4369 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855473279.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:40 Heat of formation + Delta-G solvation = -47.297869 kcal Electronic energy + Delta-G solvation = -20066.901502 eV Core-core repulsion = 17083.979927 eV Total energy + Delta-G solvation = -2982.921575 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.58535 -37.79047 -36.66401 -34.76268 -32.70018 -31.10640 -29.54830 -27.31654 -26.44903 -24.97540 -24.85348 -22.61069 -21.18721 -20.45812 -19.67648 -18.00903 -16.86290 -16.19680 -16.02109 -15.44728 -14.84977 -14.68412 -14.41971 -14.32859 -13.82353 -13.49474 -13.26790 -12.89856 -12.50518 -12.30389 -12.02724 -11.96789 -11.80274 -11.53406 -11.40457 -11.26974 -11.21076 -11.09308 -10.95119 -10.79839 -10.73435 -10.52414 -10.44722 -10.37994 -10.34693 -9.52922 -9.19498 -8.89321 -8.59160 -7.82993 -6.19662 -4.25088 3.21708 3.23296 3.30788 3.34299 3.63440 4.32263 4.52127 4.70173 4.83246 4.96032 4.98521 5.01888 5.10684 5.20997 5.31284 5.42415 5.52366 5.54408 5.59466 5.73214 5.77697 5.79789 5.82202 5.87627 5.91373 6.01223 6.04141 6.06159 6.16119 6.18462 6.21589 6.26907 6.30546 6.45421 6.52768 6.56559 6.65060 6.68930 6.82413 7.54967 7.78453 8.17541 8.58344 8.79243 8.82516 9.41856 10.90149 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.035495 B = 0.002847 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.652040 B = 9830.917672 C =10383.306091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.121 4.121 4 C -0.121 4.121 5 C -0.115 4.115 6 C -0.074 4.074 7 H 0.076 0.924 8 C -0.152 4.152 9 C -0.130 4.130 10 C 0.531 3.469 11 O -0.564 6.564 12 N -0.646 5.646 13 C 0.098 3.902 14 C 0.034 3.966 15 C -0.516 4.516 16 H 0.064 0.936 17 C 0.067 3.933 18 N -0.886 5.886 19 Si 0.896 3.104 20 H -0.271 1.271 21 H -0.283 1.283 22 H -0.283 1.283 23 C 0.098 3.902 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.050 0.950 37 H 0.044 0.956 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.073 0.927 41 H 0.059 0.941 42 H 0.068 0.932 43 H 0.263 0.737 44 H 0.056 0.944 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.758 -12.502 -4.836 18.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.158 4.158 4 C -0.158 4.158 5 C -0.153 4.153 6 C -0.093 4.093 7 H 0.094 0.906 8 C -0.209 4.209 9 C -0.170 4.170 10 C 0.321 3.679 11 O -0.445 6.445 12 N -0.379 5.379 13 C -0.025 4.025 14 C 0.015 3.985 15 C -0.554 4.554 16 H 0.082 0.918 17 C -0.136 4.136 18 N -0.523 5.523 19 Si 0.723 3.277 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.209 1.209 23 C -0.024 4.024 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.091 0.909 41 H 0.078 0.922 42 H 0.086 0.914 43 H 0.073 0.927 44 H 0.074 0.926 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.669 -13.119 -4.745 18.845 hybrid contribution 0.291 1.053 -0.245 1.120 sum -12.377 -12.066 -4.989 17.991 Atomic orbital electron populations 1.21785 0.96106 1.01396 1.01759 1.21546 0.95646 0.97235 1.01937 1.21637 0.95774 0.96450 1.01957 1.21646 0.94822 0.97089 1.02239 1.21666 0.94971 0.96702 1.01941 1.20873 0.94075 0.94660 0.99643 0.90582 1.21980 1.03233 0.99727 0.95965 1.21654 0.92698 0.98803 1.03844 1.20171 0.89483 0.82166 0.76067 1.90587 1.70723 1.30456 1.52754 1.50074 1.11271 1.06470 1.70096 1.23637 1.02052 0.76164 1.00626 1.20394 0.91003 0.91370 0.95726 1.20958 1.17795 0.91676 1.25009 0.91797 1.25037 0.94907 0.99300 0.94365 1.69962 1.28454 1.26511 1.27378 0.86479 0.79899 0.82872 0.78446 1.19555 1.20896 1.20868 1.23314 0.82698 0.96412 0.99946 0.92972 0.92794 0.92836 0.92159 0.92114 0.92107 0.92142 0.91740 0.92065 0.92001 0.92044 0.90680 0.93073 0.93653 0.89544 0.89352 0.90885 0.92241 0.91400 0.92690 0.92590 0.91051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.91 37.16 0.37 -0.68 16 2 C -0.13 -0.96 5.93 -26.73 -0.16 -1.12 16 3 C -0.12 -1.01 5.21 -26.73 -0.14 -1.15 16 4 C -0.12 -1.14 4.97 -26.73 -0.13 -1.28 16 5 C -0.12 -1.22 4.68 -26.73 -0.13 -1.35 16 6 C -0.07 -0.98 2.04 -90.62 -0.18 -1.16 16 7 H 0.08 1.12 7.95 -51.93 -0.41 0.71 16 8 C -0.15 -2.04 8.69 37.16 0.32 -1.71 16 9 C -0.13 -1.95 5.00 -27.88 -0.14 -2.09 16 10 C 0.53 10.32 7.79 -10.98 -0.09 10.23 16 11 O -0.56 -12.34 14.74 5.56 0.08 -12.26 16 12 N -0.65 -13.25 3.69 -185.02 -0.68 -13.93 16 13 C 0.10 2.05 8.00 -8.36 -0.07 1.99 16 14 C 0.03 0.81 3.79 -91.11 -0.35 0.46 16 15 C -0.52 -13.14 8.83 -34.44 -0.30 -13.44 16 16 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 17 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 18 N -0.89 -24.06 13.26 55.43 0.74 -23.32 16 19 Si 0.90 20.00 29.54 -169.99 -5.02 14.98 16 20 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 C 0.10 2.09 8.17 -8.49 -0.07 2.02 16 24 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.61 6.56 -51.93 -0.34 0.27 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 1.23 5.95 -51.93 -0.31 0.92 16 36 H 0.05 0.60 6.56 -51.93 -0.34 0.26 16 37 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.07 1.50 8.10 -51.93 -0.42 1.08 16 41 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 42 H 0.07 1.75 8.11 -51.93 -0.42 1.33 16 43 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 44 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 45 H 0.07 1.46 8.10 -51.93 -0.42 1.04 16 LS Contribution 360.64 15.07 5.43 5.43 Total: -1.00 -27.82 360.64 -9.16 -36.98 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -8.55 Total: -0.26 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: -1.16 Total: -7.63 kcal Atomic # 7 Polarization: -37.31 SS G_CDS: 0.05 Total: -37.25 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: 0.08 Total: -12.26 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -27.82 -9.16 -36.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855473279.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.315 kcal (2) G-P(sol) polarization free energy of solvation -27.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds