Wall clock time and date at job start Mon Mar 30 2020 07:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47375 * 2 1 4 4 C 1.52997 * 109.47375 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47113 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.46871 * 180.02562 * 5 4 3 7 7 H 1.08990 * 109.47355 * 304.99798 * 6 5 4 8 8 C 1.53005 * 109.47165 * 65.00306 * 6 5 4 9 9 C 1.53000 * 109.46776 * 184.99808 * 6 5 4 10 10 C 1.50703 * 109.46912 * 175.00090 * 9 6 5 11 11 O 1.21278 * 119.99985 * 359.97438 * 10 9 6 12 12 N 1.34777 * 120.00161 * 180.02562 * 10 9 6 13 13 C 1.47071 * 136.05157 * 359.62556 * 12 10 9 14 14 C 1.53762 * 87.88358 * 152.97035 * 13 12 10 15 15 C 1.50698 * 114.27040 * 139.79574 * 14 13 12 16 16 H 1.07999 * 119.99623 * 266.47690 * 15 14 13 17 17 C 1.37870 * 120.00348 * 86.46609 * 15 14 13 18 18 N 1.31516 * 120.00101 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00116 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46765 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47163 * 119.99956 * 19 17 15 22 22 H 1.48496 * 109.47152 * 240.00414 * 19 17 15 23 23 C 1.47065 * 136.06111 * 180.02562 * 12 10 9 24 24 H 1.09007 * 109.47177 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47223 * 299.99593 * 1 2 3 26 26 H 1.09001 * 109.47310 * 59.99552 * 1 2 3 27 27 H 1.09003 * 109.46752 * 240.00163 * 2 1 3 28 28 H 1.09001 * 109.47310 * 120.00448 * 2 1 3 29 29 H 1.09002 * 109.46613 * 60.00033 * 3 2 1 30 30 H 1.09001 * 109.47267 * 300.00475 * 3 2 1 31 31 H 1.09003 * 109.46752 * 60.00163 * 4 3 2 32 32 H 1.09001 * 109.47310 * 300.00448 * 4 3 2 33 33 H 1.08993 * 109.46856 * 60.00181 * 5 4 3 34 34 H 1.09001 * 109.46973 * 299.99788 * 5 4 3 35 35 H 1.09001 * 109.47099 * 179.97438 * 8 6 5 36 36 H 1.09004 * 109.46908 * 299.99702 * 8 6 5 37 37 H 1.09000 * 109.47443 * 59.99545 * 8 6 5 38 38 H 1.09002 * 109.47398 * 295.00168 * 9 6 5 39 39 H 1.09001 * 109.47194 * 55.00349 * 9 6 5 40 40 H 1.09001 * 113.46536 * 267.69429 * 13 12 10 41 41 H 1.08993 * 113.47241 * 38.14077 * 13 12 10 42 42 H 1.09002 * 114.38613 * 272.67249 * 14 13 12 43 43 H 0.97000 * 120.00007 * 179.97438 * 18 17 15 44 44 H 1.08997 * 113.46365 * 321.86138 * 23 12 10 45 45 H 1.08999 * 113.46854 * 92.24224 * 23 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0800 2.8850 0.0013 6 6 5.6100 2.8849 0.0013 7 1 5.9733 2.2951 0.8428 8 6 6.1200 2.2759 -1.3064 9 6 6.1200 4.3219 0.1276 10 6 7.6219 4.3128 0.2511 11 8 8.2250 3.2606 0.2397 12 7 8.2949 5.4739 0.3752 13 6 7.9439 6.9013 0.4238 14 6 9.2199 7.1284 1.2512 15 6 9.9746 8.3829 0.8941 16 1 10.7789 8.3428 0.1745 17 6 9.6382 9.5819 1.4858 18 7 8.6589 9.6307 2.3623 19 14 10.5733 11.1371 1.0425 20 1 11.6198 10.8162 0.0390 21 1 9.6323 12.1353 0.4739 22 1 11.2107 11.6959 2.2618 23 6 9.7039 5.8715 0.5146 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.8932 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.6767 1.9562 0.8900 30 1 1.6767 1.9563 -0.8899 31 1 3.9336 0.9285 -0.8892 32 1 3.9330 0.9287 0.8908 33 1 3.7163 3.3984 0.8912 34 1 3.7171 3.3990 -0.8887 35 1 7.2100 2.2763 -1.3066 36 1 5.7567 1.2521 -1.3964 37 1 5.7567 2.8657 -2.1480 38 1 5.8316 4.8889 -0.7575 39 1 5.6854 4.7851 1.0134 40 1 7.9669 7.3873 -0.5515 41 1 7.0256 7.1040 0.9749 42 1 9.0896 6.9950 2.3252 43 1 8.4224 10.4742 2.7788 44 1 10.2852 5.1968 1.1430 45 1 10.1908 6.0854 -0.4369 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855473279.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:39 Heat of formation + Delta-G solvation = -60.058468 kcal Electronic energy + Delta-G solvation = -20067.454843 eV Core-core repulsion = 17083.979927 eV Total energy + Delta-G solvation = -2983.474916 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.18916 -39.22508 -37.76609 -35.64852 -34.64763 -32.07557 -31.05026 -28.71191 -27.29525 -26.75769 -26.49067 -23.52314 -22.14244 -21.75281 -20.79385 -19.61736 -18.73441 -17.78576 -17.01659 -16.66939 -16.46892 -16.28973 -15.66039 -15.38091 -14.91289 -14.51918 -14.27255 -14.10797 -13.96425 -13.52220 -13.36014 -13.26327 -13.09966 -12.79688 -12.75231 -12.66659 -12.55559 -12.29196 -12.17718 -12.02607 -11.86204 -11.54640 -11.48542 -11.39502 -11.23866 -11.21458 -11.04205 -10.61808 -10.44559 -9.52677 -8.16870 -6.27883 1.46119 1.49670 1.60195 1.68383 2.06231 2.46532 3.13383 3.54315 3.76383 3.94464 4.03471 4.12813 4.22440 4.26825 4.36810 4.41145 4.44105 4.55852 4.61302 4.68207 4.69734 4.72422 4.75531 4.83153 4.85855 4.94101 4.96665 4.99326 5.03385 5.08127 5.09184 5.21113 5.22949 5.27293 5.37098 5.43704 5.48696 5.57579 5.59640 5.61571 5.81555 6.23510 6.80970 6.96738 7.22553 7.42320 8.93335 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.035495 B = 0.002847 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.652040 B = 9830.917672 C =10383.306091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.117 4.117 4 C -0.118 4.118 5 C -0.108 4.108 6 C -0.070 4.070 7 H 0.057 0.943 8 C -0.148 4.148 9 C -0.124 4.124 10 C 0.525 3.475 11 O -0.591 6.591 12 N -0.649 5.649 13 C 0.114 3.886 14 C 0.022 3.978 15 C -0.527 4.527 16 H 0.066 0.934 17 C 0.020 3.980 18 N -0.918 5.918 19 Si 0.959 3.041 20 H -0.265 1.265 21 H -0.279 1.279 22 H -0.284 1.284 23 C 0.103 3.897 24 H 0.057 0.943 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.042 0.958 36 H 0.065 0.935 37 H 0.057 0.943 38 H 0.105 0.895 39 H 0.099 0.901 40 H 0.081 0.919 41 H 0.062 0.938 42 H 0.038 0.962 43 H 0.265 0.735 44 H 0.052 0.948 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.938 -12.355 -5.951 19.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.155 4.155 4 C -0.156 4.156 5 C -0.145 4.145 6 C -0.089 4.089 7 H 0.076 0.924 8 C -0.205 4.205 9 C -0.163 4.163 10 C 0.317 3.683 11 O -0.473 6.473 12 N -0.383 5.383 13 C -0.008 4.008 14 C 0.002 3.998 15 C -0.565 4.565 16 H 0.084 0.916 17 C -0.180 4.180 18 N -0.557 5.557 19 Si 0.785 3.215 20 H -0.189 1.189 21 H -0.205 1.205 22 H -0.210 1.210 23 C -0.020 4.020 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.061 0.939 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.123 0.877 39 H 0.117 0.883 40 H 0.099 0.901 41 H 0.081 0.919 42 H 0.056 0.944 43 H 0.074 0.926 44 H 0.071 0.929 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -13.853 -12.985 -5.868 19.873 hybrid contribution 0.694 0.933 0.125 1.169 sum -13.159 -12.052 -5.743 18.745 Atomic orbital electron populations 1.21781 0.95482 1.01847 1.01905 1.21549 0.96218 0.96784 1.01899 1.21600 0.94765 0.96945 1.02156 1.21618 0.95684 0.96251 1.02011 1.21603 0.92555 0.97653 1.02701 1.20857 0.96005 0.93157 0.98864 0.92444 1.21920 1.01022 1.01047 0.96507 1.21732 0.89050 1.00407 1.05111 1.21022 0.91245 0.81162 0.74879 1.90581 1.71758 1.31232 1.53731 1.50121 1.10811 1.06735 1.70609 1.23367 1.00731 0.76370 1.00360 1.20280 0.93012 0.91964 0.94515 1.21239 1.17907 0.92488 1.24893 0.91628 1.25770 0.95713 1.02194 0.94329 1.70062 1.29872 1.27261 1.28472 0.85485 0.78738 0.79229 0.78073 1.18869 1.20454 1.20997 1.23193 0.83502 0.95307 0.99983 0.92423 0.92762 0.92578 0.92056 0.92344 0.92108 0.91716 0.91671 0.92649 0.91554 0.90937 0.93935 0.91599 0.92362 0.87699 0.88313 0.90083 0.91944 0.94400 0.92622 0.92921 0.90051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.91 71.98 0.71 -1.12 16 2 C -0.13 -1.73 5.93 30.59 0.18 -1.54 16 3 C -0.12 -1.71 5.21 30.59 0.16 -1.55 16 4 C -0.12 -2.02 4.97 30.59 0.15 -1.87 16 5 C -0.11 -2.03 4.68 30.60 0.14 -1.89 16 6 C -0.07 -1.76 2.04 -10.79 -0.02 -1.78 16 7 H 0.06 1.66 7.95 -2.39 -0.02 1.64 16 8 C -0.15 -3.77 8.69 71.98 0.63 -3.14 16 9 C -0.12 -3.50 5.00 29.85 0.15 -3.35 16 10 C 0.52 20.10 7.79 87.66 0.68 20.79 16 11 O -0.59 -25.93 14.74 -3.02 -0.04 -25.97 16 12 N -0.65 -26.35 3.69 -857.68 -3.16 -29.51 16 13 C 0.11 4.72 8.00 83.27 0.67 5.39 16 14 C 0.02 1.02 3.79 -11.11 -0.04 0.98 16 15 C -0.53 -26.77 8.83 25.60 0.23 -26.54 16 16 H 0.07 3.24 7.81 -2.91 -0.02 3.22 16 17 C 0.02 1.04 5.46 84.65 0.46 1.50 16 18 N -0.92 -50.05 13.26 21.44 0.28 -49.77 16 19 Si 0.96 40.67 29.54 68.60 2.03 42.69 16 20 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 21 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 22 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 23 C 0.10 4.36 8.17 83.19 0.68 5.04 16 24 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 25 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.06 0.81 8.14 -2.39 -0.02 0.80 16 29 H 0.06 0.89 8.14 -2.39 -0.02 0.88 16 30 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.06 1.10 6.56 -2.39 -0.02 1.09 16 32 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.04 1.37 5.95 -2.39 -0.01 1.35 16 36 H 0.07 1.45 6.56 -2.38 -0.02 1.44 16 37 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 39 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 40 H 0.08 3.23 8.10 -2.39 -0.02 3.21 16 41 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 42 H 0.04 2.01 8.11 -2.39 -0.02 1.99 16 43 H 0.26 13.67 8.31 -92.71 -0.77 12.90 16 44 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 45 H 0.08 3.28 8.10 -2.39 -0.02 3.26 16 Total: -1.00 -58.81 360.64 4.80 -54.01 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: 0.91 Total: 17.63 kcal Atomic # 6 Polarization: -13.86 SS G_CDS: 4.78 Total: -9.08 kcal Atomic # 7 Polarization: -76.40 SS G_CDS: -2.88 Total: -79.27 kcal Atomic # 8 Polarization: -25.93 SS G_CDS: -0.04 Total: -25.97 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 2.03 Total: 42.69 kcal Total: -58.81 4.80 -54.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855473279.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.047 kcal (2) G-P(sol) polarization free energy of solvation -58.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds