Wall clock time and date at job start Mon Mar 30 2020 07:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52993 * 109.47473 * 2 1 4 4 C 1.53006 * 109.47478 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47000 * 180.02562 * 4 3 2 6 6 C 1.53006 * 109.46626 * 180.02562 * 5 4 3 7 7 H 1.09000 * 109.47314 * 54.99967 * 6 5 4 8 8 C 1.52996 * 109.47102 * 294.99833 * 6 5 4 9 9 C 1.52997 * 109.46646 * 174.99857 * 6 5 4 10 10 C 1.50702 * 109.46995 * 185.00035 * 9 6 5 11 11 O 1.21284 * 120.00008 * 359.97438 * 10 9 6 12 12 N 1.34773 * 120.00263 * 180.02562 * 10 9 6 13 13 C 1.47073 * 136.05664 * 359.62697 * 12 10 9 14 14 C 1.53750 * 87.88597 * 152.96721 * 13 12 10 15 15 C 1.50705 * 114.27049 * 139.79560 * 14 13 12 16 16 H 1.08002 * 119.99828 * 266.47386 * 15 14 13 17 17 C 1.37873 * 120.00234 * 86.46809 * 15 14 13 18 18 N 1.31520 * 119.99683 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00014 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47654 * 89.99888 * 19 17 15 21 21 H 1.48510 * 109.47011 * 210.00189 * 19 17 15 22 22 H 1.48504 * 109.47044 * 329.99439 * 19 17 15 23 23 C 1.47068 * 136.05982 * 180.02562 * 12 10 9 24 24 H 1.09001 * 109.47372 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47261 * 300.00171 * 1 2 3 26 26 H 1.09000 * 109.46870 * 59.99782 * 1 2 3 27 27 H 1.09004 * 109.47108 * 240.00112 * 2 1 3 28 28 H 1.09004 * 109.47368 * 120.00213 * 2 1 3 29 29 H 1.09004 * 109.46862 * 59.99962 * 3 2 1 30 30 H 1.09000 * 109.47250 * 299.99985 * 3 2 1 31 31 H 1.08993 * 109.46765 * 59.99818 * 4 3 2 32 32 H 1.09000 * 109.46866 * 300.00218 * 4 3 2 33 33 H 1.08993 * 109.47839 * 60.00073 * 5 4 3 34 34 H 1.09000 * 109.47160 * 299.99635 * 5 4 3 35 35 H 1.08997 * 109.47474 * 60.00037 * 8 6 5 36 36 H 1.09002 * 109.46922 * 180.02562 * 8 6 5 37 37 H 1.09006 * 109.46822 * 299.99923 * 8 6 5 38 38 H 1.09007 * 109.47194 * 304.99526 * 9 6 5 39 39 H 1.08992 * 109.47477 * 65.00207 * 9 6 5 40 40 H 1.09000 * 113.46638 * 267.69737 * 13 12 10 41 41 H 1.08991 * 113.46867 * 38.13475 * 13 12 10 42 42 H 1.09003 * 114.39383 * 272.67282 * 14 13 12 43 43 H 0.97007 * 119.99463 * 180.02562 * 18 17 15 44 44 H 1.09001 * 113.46456 * 321.85797 * 23 12 10 45 45 H 1.08994 * 113.47342 * 92.23940 * 23 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 6 4.0801 2.8849 0.0000 6 6 5.6101 2.8848 -0.0013 7 1 5.9727 2.2960 -0.8438 8 6 6.1212 2.2742 1.3052 9 6 6.1200 4.3219 -0.1264 10 6 7.6218 4.3130 -0.2512 11 8 8.2250 3.2608 -0.2406 12 7 8.2948 5.4742 -0.3736 13 6 7.9428 6.9010 -0.4322 14 6 9.3351 7.2096 0.1426 15 6 10.0088 8.4077 -0.4754 16 1 10.6844 8.2775 -1.3080 17 6 9.7626 9.6698 0.0218 18 7 8.9402 9.8282 1.0359 19 14 10.5972 11.1548 -0.7447 20 1 9.7476 11.6905 -1.8385 21 1 10.7911 12.2025 0.2899 22 1 11.9166 10.7522 -1.2946 23 6 9.7036 5.8720 -0.5143 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.6767 1.9562 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9330 0.9287 -0.8908 32 1 3.9338 0.9284 0.8891 33 1 3.7172 3.3983 0.8904 34 1 3.7164 3.3992 -0.8896 35 1 5.7579 1.2504 1.3943 36 1 7.2112 2.2746 1.3044 37 1 5.7585 2.8632 2.1477 38 1 5.6846 4.7861 -1.0114 39 1 5.8324 4.8879 0.7595 40 1 7.8005 7.2716 -1.4474 41 1 7.1257 7.1743 0.2352 42 1 9.3844 7.2017 1.2315 43 1 8.7668 10.7163 1.3855 44 1 10.3868 5.2685 0.0834 45 1 10.0255 5.9705 -1.5509 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855473280.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:44 Heat of formation + Delta-G solvation = -47.252410 kcal Electronic energy + Delta-G solvation = -20072.340378 eV Core-core repulsion = 17089.420775 eV Total energy + Delta-G solvation = -2982.919603 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.58457 -37.78823 -36.66459 -34.76175 -32.69801 -31.10680 -29.54825 -27.30552 -26.44378 -24.97296 -24.85213 -22.61445 -21.18928 -20.47224 -19.64498 -18.02765 -16.86016 -16.21469 -15.99348 -15.32812 -15.06332 -14.60786 -14.51794 -14.21254 -13.77991 -13.53100 -13.20055 -12.99298 -12.49052 -12.27321 -12.02047 -11.97084 -11.80214 -11.52132 -11.40628 -11.29062 -11.18359 -11.08447 -10.98243 -10.81099 -10.72131 -10.50008 -10.44119 -10.37602 -10.33132 -9.54087 -9.20559 -8.90512 -8.58864 -7.82155 -6.19427 -4.24918 3.22724 3.23375 3.30528 3.33484 3.63319 4.32320 4.51906 4.69855 4.83149 4.95773 4.99048 5.01871 5.10851 5.21221 5.30831 5.42259 5.51940 5.54206 5.59954 5.73148 5.78659 5.80963 5.81311 5.88820 5.91870 6.01458 6.04692 6.05497 6.16601 6.18528 6.21192 6.27806 6.30807 6.45619 6.53399 6.57642 6.66997 6.68827 6.82464 7.54892 7.78536 8.17593 8.58355 8.79060 8.82524 9.41915 10.90326 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.036750 B = 0.002829 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.716307 B = 9896.430335 C =10363.308295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.121 4.121 4 C -0.120 4.120 5 C -0.115 4.115 6 C -0.073 4.073 7 H 0.075 0.925 8 C -0.153 4.153 9 C -0.130 4.130 10 C 0.531 3.469 11 O -0.564 6.564 12 N -0.646 5.646 13 C 0.098 3.902 14 C 0.035 3.965 15 C -0.517 4.517 16 H 0.063 0.937 17 C 0.068 3.932 18 N -0.886 5.886 19 Si 0.896 3.104 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.272 1.272 23 C 0.098 3.902 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.050 0.950 36 H 0.075 0.925 37 H 0.046 0.954 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.073 0.927 41 H 0.059 0.941 42 H 0.068 0.932 43 H 0.264 0.736 44 H 0.056 0.944 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.280 -12.852 -1.435 18.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.158 4.158 4 C -0.158 4.158 5 C -0.153 4.153 6 C -0.092 4.092 7 H 0.093 0.907 8 C -0.210 4.210 9 C -0.170 4.170 10 C 0.321 3.679 11 O -0.445 6.445 12 N -0.379 5.379 13 C -0.025 4.025 14 C 0.015 3.985 15 C -0.555 4.555 16 H 0.081 0.919 17 C -0.136 4.136 18 N -0.523 5.523 19 Si 0.723 3.277 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.197 1.197 23 C -0.024 4.024 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.094 0.906 37 H 0.065 0.935 38 H 0.104 0.896 39 H 0.107 0.893 40 H 0.091 0.909 41 H 0.078 0.922 42 H 0.086 0.914 43 H 0.074 0.926 44 H 0.074 0.926 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.169 -13.454 -1.278 18.869 hybrid contribution 0.234 1.011 -0.446 1.129 sum -12.935 -12.443 -1.724 18.031 Atomic orbital electron populations 1.21783 0.96106 1.01398 1.01758 1.21546 0.95645 0.97235 1.01938 1.21638 0.95777 0.96449 1.01953 1.21646 0.94814 0.97092 1.02240 1.21667 0.94992 0.96693 1.01932 1.20871 0.94048 0.94610 0.99668 0.90702 1.21983 1.03318 0.99687 0.95981 1.21655 0.92648 0.98839 1.03870 1.20172 0.89353 0.81990 0.76371 1.90589 1.70562 1.30337 1.53039 1.50074 1.11326 1.06573 1.69936 1.23637 1.02458 0.75799 1.00593 1.20388 0.90434 0.90463 0.97166 1.20920 1.27367 0.90449 1.16767 0.91855 1.25037 0.94807 0.99217 0.94534 1.69958 1.35023 1.23178 1.24142 0.86531 0.80019 0.82150 0.78958 1.20512 1.21127 1.19687 1.23315 0.82198 0.96377 1.00483 0.92970 0.92806 0.92826 0.92144 0.92128 0.92101 0.92154 0.92113 0.91693 0.91952 0.92111 0.93104 0.90609 0.93529 0.89575 0.89322 0.90886 0.92244 0.91395 0.92639 0.92592 0.91053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.91 37.16 0.37 -0.68 16 2 C -0.13 -0.96 5.93 -26.74 -0.16 -1.12 16 3 C -0.12 -1.00 5.21 -26.73 -0.14 -1.14 16 4 C -0.12 -1.14 4.97 -26.73 -0.13 -1.27 16 5 C -0.12 -1.22 4.68 -26.73 -0.13 -1.34 16 6 C -0.07 -0.97 2.04 -90.62 -0.18 -1.16 16 7 H 0.07 1.09 7.96 -51.93 -0.41 0.67 16 8 C -0.15 -2.10 8.69 37.16 0.32 -1.77 16 9 C -0.13 -1.95 5.00 -27.88 -0.14 -2.09 16 10 C 0.53 10.32 7.79 -10.99 -0.09 10.24 16 11 O -0.56 -12.34 14.74 5.55 0.08 -12.26 16 12 N -0.65 -13.25 3.69 -185.05 -0.68 -13.94 16 13 C 0.10 2.05 8.00 -8.37 -0.07 1.98 16 14 C 0.03 0.82 3.79 -91.12 -0.35 0.47 16 15 C -0.52 -13.15 8.83 -34.44 -0.30 -13.46 16 16 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 17 C 0.07 1.75 5.46 -17.82 -0.10 1.66 16 18 N -0.89 -24.05 13.26 55.43 0.74 -23.32 16 19 Si 0.90 20.00 29.54 -169.99 -5.02 14.98 16 20 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 21 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 23 C 0.10 2.09 8.17 -8.50 -0.07 2.02 16 24 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.62 6.57 -51.93 -0.34 0.28 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.05 0.61 6.57 -51.93 -0.34 0.27 16 36 H 0.08 1.27 5.95 -51.93 -0.31 0.96 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 39 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 40 H 0.07 1.50 8.10 -51.93 -0.42 1.08 16 41 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 42 H 0.07 1.75 8.11 -51.93 -0.42 1.33 16 43 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 44 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 45 H 0.07 1.46 8.10 -51.93 -0.42 1.04 16 LS Contribution 360.64 15.07 5.43 5.43 Total: -1.00 -27.79 360.64 -9.16 -36.95 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -8.55 Total: -0.19 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: -1.16 Total: -7.67 kcal Atomic # 7 Polarization: -37.31 SS G_CDS: 0.05 Total: -37.25 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: 0.08 Total: -12.26 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -27.79 -9.16 -36.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855473280.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.302 kcal (2) G-P(sol) polarization free energy of solvation -27.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds