Wall clock time and date at job start Mon Mar 30 2020 07:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52993 * 109.47473 * 2 1 4 4 C 1.53006 * 109.47478 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47000 * 180.02562 * 4 3 2 6 6 C 1.53006 * 109.46626 * 180.02562 * 5 4 3 7 7 H 1.09000 * 109.47314 * 54.99967 * 6 5 4 8 8 C 1.52996 * 109.47102 * 294.99833 * 6 5 4 9 9 C 1.52997 * 109.46646 * 174.99857 * 6 5 4 10 10 C 1.50702 * 109.46995 * 185.00035 * 9 6 5 11 11 O 1.21284 * 120.00008 * 359.97438 * 10 9 6 12 12 N 1.34773 * 120.00263 * 180.02562 * 10 9 6 13 13 C 1.47073 * 136.05664 * 359.62697 * 12 10 9 14 14 C 1.53750 * 87.88597 * 152.96721 * 13 12 10 15 15 C 1.50705 * 114.27049 * 139.79560 * 14 13 12 16 16 H 1.08002 * 119.99828 * 266.47386 * 15 14 13 17 17 C 1.37873 * 120.00234 * 86.46809 * 15 14 13 18 18 N 1.31520 * 119.99683 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00014 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47654 * 89.99888 * 19 17 15 21 21 H 1.48510 * 109.47011 * 210.00189 * 19 17 15 22 22 H 1.48504 * 109.47044 * 329.99439 * 19 17 15 23 23 C 1.47068 * 136.05982 * 180.02562 * 12 10 9 24 24 H 1.09001 * 109.47372 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47261 * 300.00171 * 1 2 3 26 26 H 1.09000 * 109.46870 * 59.99782 * 1 2 3 27 27 H 1.09004 * 109.47108 * 240.00112 * 2 1 3 28 28 H 1.09004 * 109.47368 * 120.00213 * 2 1 3 29 29 H 1.09004 * 109.46862 * 59.99962 * 3 2 1 30 30 H 1.09000 * 109.47250 * 299.99985 * 3 2 1 31 31 H 1.08993 * 109.46765 * 59.99818 * 4 3 2 32 32 H 1.09000 * 109.46866 * 300.00218 * 4 3 2 33 33 H 1.08993 * 109.47839 * 60.00073 * 5 4 3 34 34 H 1.09000 * 109.47160 * 299.99635 * 5 4 3 35 35 H 1.08997 * 109.47474 * 60.00037 * 8 6 5 36 36 H 1.09002 * 109.46922 * 180.02562 * 8 6 5 37 37 H 1.09006 * 109.46822 * 299.99923 * 8 6 5 38 38 H 1.09007 * 109.47194 * 304.99526 * 9 6 5 39 39 H 1.08992 * 109.47477 * 65.00207 * 9 6 5 40 40 H 1.09000 * 113.46638 * 267.69737 * 13 12 10 41 41 H 1.08991 * 113.46867 * 38.13475 * 13 12 10 42 42 H 1.09003 * 114.39383 * 272.67282 * 14 13 12 43 43 H 0.97007 * 119.99463 * 180.02562 * 18 17 15 44 44 H 1.09001 * 113.46456 * 321.85797 * 23 12 10 45 45 H 1.08994 * 113.47342 * 92.23940 * 23 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 6 4.0801 2.8849 0.0000 6 6 5.6101 2.8848 -0.0013 7 1 5.9727 2.2960 -0.8438 8 6 6.1212 2.2742 1.3052 9 6 6.1200 4.3219 -0.1264 10 6 7.6218 4.3130 -0.2512 11 8 8.2250 3.2608 -0.2406 12 7 8.2948 5.4742 -0.3736 13 6 7.9428 6.9010 -0.4322 14 6 9.3351 7.2096 0.1426 15 6 10.0088 8.4077 -0.4754 16 1 10.6844 8.2775 -1.3080 17 6 9.7626 9.6698 0.0218 18 7 8.9402 9.8282 1.0359 19 14 10.5972 11.1548 -0.7447 20 1 9.7476 11.6905 -1.8385 21 1 10.7911 12.2025 0.2899 22 1 11.9166 10.7522 -1.2946 23 6 9.7036 5.8720 -0.5143 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.6767 1.9562 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9330 0.9287 -0.8908 32 1 3.9338 0.9284 0.8891 33 1 3.7172 3.3983 0.8904 34 1 3.7164 3.3992 -0.8896 35 1 5.7579 1.2504 1.3943 36 1 7.2112 2.2746 1.3044 37 1 5.7585 2.8632 2.1477 38 1 5.6846 4.7861 -1.0114 39 1 5.8324 4.8879 0.7595 40 1 7.8005 7.2716 -1.4474 41 1 7.1257 7.1743 0.2352 42 1 9.3844 7.2017 1.2315 43 1 8.7668 10.7163 1.3855 44 1 10.3868 5.2685 0.0834 45 1 10.0255 5.9705 -1.5509 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855473280.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:43 Heat of formation + Delta-G solvation = -59.982829 kcal Electronic energy + Delta-G solvation = -20072.892410 eV Core-core repulsion = 17089.420775 eV Total energy + Delta-G solvation = -2983.471636 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.18868 -39.22353 -37.76479 -35.64781 -34.64485 -32.07403 -31.05241 -28.71164 -27.29682 -26.75554 -26.48964 -23.52810 -22.13988 -21.75475 -20.77302 -19.63971 -18.72954 -17.78292 -16.90552 -16.72584 -16.53576 -16.31814 -15.63234 -15.27156 -14.99344 -14.51495 -14.29685 -14.12283 -13.94696 -13.51981 -13.31820 -13.23976 -13.14714 -12.79306 -12.75793 -12.68426 -12.53785 -12.31049 -12.16395 -12.00563 -11.86152 -11.53664 -11.48589 -11.40415 -11.24262 -11.21240 -11.05164 -10.61253 -10.46284 -9.51589 -8.16586 -6.27665 1.47492 1.49726 1.59063 1.68533 2.06172 2.46665 3.13574 3.54386 3.76556 3.94427 4.03243 4.13052 4.22397 4.26843 4.38139 4.39478 4.44092 4.55271 4.62574 4.67913 4.69833 4.73027 4.75500 4.82794 4.85705 4.94372 4.97547 4.98299 5.03121 5.07956 5.09589 5.21126 5.22941 5.27248 5.37224 5.43700 5.48595 5.57743 5.59630 5.61362 5.81533 6.23608 6.80850 6.96775 7.22590 7.42440 8.93373 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.036750 B = 0.002829 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.716307 B = 9896.430335 C =10363.308295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.117 4.117 4 C -0.118 4.118 5 C -0.108 4.108 6 C -0.069 4.069 7 H 0.061 0.939 8 C -0.150 4.150 9 C -0.124 4.124 10 C 0.525 3.475 11 O -0.591 6.591 12 N -0.649 5.649 13 C 0.114 3.886 14 C 0.022 3.978 15 C -0.528 4.528 16 H 0.066 0.934 17 C 0.020 3.980 18 N -0.918 5.918 19 Si 0.959 3.041 20 H -0.272 1.272 21 H -0.287 1.287 22 H -0.268 1.268 23 C 0.103 3.897 24 H 0.057 0.943 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.041 0.959 37 H 0.053 0.947 38 H 0.105 0.895 39 H 0.098 0.902 40 H 0.081 0.919 41 H 0.062 0.938 42 H 0.038 0.962 43 H 0.265 0.735 44 H 0.052 0.948 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.613 -12.821 -2.236 19.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C -0.155 4.155 4 C -0.156 4.156 5 C -0.145 4.145 6 C -0.088 4.088 7 H 0.079 0.921 8 C -0.207 4.207 9 C -0.163 4.163 10 C 0.317 3.683 11 O -0.473 6.473 12 N -0.383 5.383 13 C -0.008 4.008 14 C 0.003 3.997 15 C -0.566 4.566 16 H 0.084 0.916 17 C -0.180 4.180 18 N -0.556 5.556 19 Si 0.785 3.215 20 H -0.198 1.198 21 H -0.213 1.213 22 H -0.192 1.192 23 C -0.020 4.020 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.060 0.940 37 H 0.073 0.927 38 H 0.124 0.876 39 H 0.117 0.883 40 H 0.099 0.901 41 H 0.080 0.920 42 H 0.056 0.944 43 H 0.074 0.926 44 H 0.071 0.929 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -14.508 -13.436 -2.087 19.884 hybrid contribution 0.689 0.928 -0.166 1.167 sum -13.819 -12.509 -2.253 18.775 Atomic orbital electron populations 1.21780 0.95488 1.01844 1.01905 1.21549 0.96212 0.96791 1.01900 1.21601 0.94770 0.96938 1.02155 1.21617 0.95677 0.96244 1.02025 1.21604 0.92529 0.97660 1.02714 1.20854 0.96007 0.93138 0.98762 0.92061 1.21932 1.01024 1.01042 0.96678 1.21734 0.89051 1.00388 1.05147 1.21023 0.91122 0.81005 0.75157 1.90582 1.71609 1.31133 1.53982 1.50119 1.10874 1.06849 1.70434 1.23366 1.00806 0.75917 1.00741 1.20274 0.92659 0.91263 0.95540 1.21210 1.27385 0.91248 1.16775 0.91629 1.25771 0.95412 1.01845 0.94963 1.70062 1.36402 1.23745 1.25431 0.85538 0.79171 0.78741 0.78094 1.19762 1.21274 1.19217 1.23195 0.83000 0.95110 1.00691 0.92429 0.92665 0.92677 0.92222 0.92178 0.91893 0.91930 0.92414 0.91881 0.91256 0.91215 0.91516 0.93996 0.92747 0.87650 0.88347 0.90082 0.91958 0.94403 0.92628 0.92935 0.90031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.91 71.98 0.71 -1.10 16 2 C -0.13 -1.71 5.93 30.59 0.18 -1.53 16 3 C -0.12 -1.70 5.21 30.59 0.16 -1.54 16 4 C -0.12 -2.00 4.97 30.60 0.15 -1.85 16 5 C -0.11 -2.02 4.68 30.60 0.14 -1.87 16 6 C -0.07 -1.73 2.04 -10.79 -0.02 -1.75 16 7 H 0.06 1.72 7.96 -2.39 -0.02 1.70 16 8 C -0.15 -3.98 8.69 71.98 0.63 -3.36 16 9 C -0.12 -3.50 5.00 29.85 0.15 -3.35 16 10 C 0.52 20.10 7.79 87.66 0.68 20.78 16 11 O -0.59 -25.92 14.74 -3.04 -0.04 -25.96 16 12 N -0.65 -26.35 3.69 -857.77 -3.16 -29.51 16 13 C 0.11 4.72 8.00 83.26 0.67 5.39 16 14 C 0.02 1.04 3.79 -11.11 -0.04 1.00 16 15 C -0.53 -26.80 8.83 25.60 0.23 -26.58 16 16 H 0.07 3.23 7.81 -2.91 -0.02 3.20 16 17 C 0.02 1.05 5.46 84.65 0.46 1.51 16 18 N -0.92 -50.05 13.26 21.45 0.28 -49.76 16 19 Si 0.96 40.64 29.54 68.60 2.03 42.67 16 20 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 21 H -0.29 -12.14 7.11 99.48 0.71 -11.43 16 22 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 23 C 0.10 4.36 8.17 83.18 0.68 5.04 16 24 H 0.06 0.61 8.14 -2.39 -0.02 0.60 16 25 H 0.05 0.63 8.14 -2.39 -0.02 0.62 16 26 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 28 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.06 0.89 8.14 -2.38 -0.02 0.88 16 30 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.06 1.01 8.14 -2.39 -0.02 1.00 16 32 H 0.06 1.09 6.57 -2.39 -0.02 1.07 16 33 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.07 1.53 6.57 -2.39 -0.02 1.51 16 36 H 0.04 1.40 5.95 -2.39 -0.01 1.39 16 37 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 38 H 0.11 2.61 8.14 -2.38 -0.02 2.59 16 39 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 40 H 0.08 3.23 8.10 -2.39 -0.02 3.21 16 41 H 0.06 2.52 8.14 -2.39 -0.02 2.51 16 42 H 0.04 2.01 8.11 -2.39 -0.02 1.99 16 43 H 0.26 13.72 8.31 -92.70 -0.77 12.95 16 44 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 45 H 0.08 3.28 8.10 -2.39 -0.02 3.26 16 Total: -1.00 -58.73 360.64 4.80 -53.94 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: 0.91 Total: 17.83 kcal Atomic # 6 Polarization: -13.98 SS G_CDS: 4.78 Total: -9.21 kcal Atomic # 7 Polarization: -76.39 SS G_CDS: -2.88 Total: -79.27 kcal Atomic # 8 Polarization: -25.92 SS G_CDS: -0.04 Total: -25.96 kcal Atomic # 14 Polarization: 40.64 SS G_CDS: 2.03 Total: 42.67 kcal Total: -58.73 4.80 -53.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855473280.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.045 kcal (2) G-P(sol) polarization free energy of solvation -58.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds