Wall clock time and date at job start Mon Mar 30 2020 07:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46668 * 2 1 4 4 C 1.52997 * 109.47153 * 119.99896 * 2 1 3 5 5 C 1.52996 * 109.47131 * 175.00442 * 4 2 1 6 6 C 1.52997 * 109.47131 * 180.02562 * 5 4 2 7 7 C 1.53006 * 109.47127 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47127 * 180.02562 * 7 6 5 9 9 C 1.50696 * 109.47055 * 179.97438 * 8 7 6 10 10 O 1.21279 * 120.00218 * 0.02562 * 9 8 7 11 11 N 1.34784 * 120.00109 * 179.97438 * 9 8 7 12 12 C 1.47069 * 136.05284 * 359.63697 * 11 9 8 13 13 C 1.53758 * 87.88391 * 152.95561 * 12 11 9 14 14 C 1.50709 * 114.26562 * 139.78735 * 13 12 11 15 15 H 1.07996 * 120.00245 * 266.47753 * 14 13 12 16 16 C 1.37875 * 119.99790 * 86.47657 * 14 13 12 17 17 N 1.31522 * 120.00005 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00056 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46954 * 89.99997 * 18 16 14 20 20 H 1.48497 * 109.47138 * 209.99919 * 18 16 14 21 21 H 1.48494 * 109.46859 * 330.00163 * 18 16 14 22 22 C 1.47059 * 136.05949 * 179.97438 * 11 9 8 23 23 H 1.08997 * 109.47855 * 299.99973 * 1 2 3 24 24 H 1.08995 * 109.47757 * 60.00479 * 1 2 3 25 25 H 1.09009 * 109.47141 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47159 * 240.00027 * 2 1 3 27 27 H 1.08993 * 109.47183 * 59.99930 * 3 2 1 28 28 H 1.09003 * 109.46567 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47144 * 299.99696 * 3 2 1 30 30 H 1.09000 * 109.47611 * 54.99820 * 4 2 1 31 31 H 1.09001 * 109.46832 * 295.00117 * 4 2 1 32 32 H 1.08996 * 109.47452 * 60.00000 * 5 4 2 33 33 H 1.09001 * 109.46997 * 299.99574 * 5 4 2 34 34 H 1.09001 * 109.47502 * 60.00153 * 6 5 4 35 35 H 1.09001 * 109.47289 * 299.99950 * 6 5 4 36 36 H 1.09001 * 109.47002 * 299.99574 * 7 6 5 37 37 H 1.08993 * 109.46955 * 60.00011 * 7 6 5 38 38 H 1.09001 * 109.47289 * 299.99953 * 8 7 6 39 39 H 1.09004 * 109.47261 * 59.99697 * 8 7 6 40 40 H 1.08995 * 113.46811 * 267.68445 * 12 11 9 41 41 H 1.09000 * 113.46782 * 38.13190 * 12 11 9 42 42 H 1.08994 * 114.40031 * 272.67293 * 13 12 11 43 43 H 0.96999 * 119.99914 * 179.97438 * 17 16 14 44 44 H 1.09000 * 113.46879 * 321.87522 * 22 11 9 45 45 H 1.09010 * 113.46500 * 92.25198 * 22 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.8309 1.1880 6 6 4.0747 -1.5527 2.4369 7 6 5.5996 -1.6629 2.3754 8 6 6.1095 -2.3853 3.6240 9 6 7.6112 -2.4944 3.5631 10 8 8.2144 -2.0389 2.6146 11 7 8.2843 -3.0974 4.5631 12 6 7.9333 -3.7437 5.8367 13 6 9.2086 -4.5906 5.6928 14 6 9.9637 -4.7968 6.9807 15 1 10.7687 -4.1281 7.2477 16 6 9.6270 -5.8391 7.8180 17 7 8.6463 -6.6531 7.4931 18 14 10.5625 -6.0942 9.4146 19 1 9.8998 -5.3326 10.5037 20 1 10.5730 -7.5392 9.7566 21 1 11.9581 -5.6136 9.2527 22 6 9.6931 -3.3933 4.8638 23 1 -0.3635 0.5138 0.8899 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.6765 1.9563 0.8899 28 1 3.1299 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6054 -1.7198 1.2953 31 1 1.7516 -0.1582 2.1369 32 1 3.9994 0.1676 1.1421 33 1 3.8532 -1.3939 0.3003 34 1 3.6402 -2.5513 2.4824 35 1 3.7863 -0.9902 3.3249 36 1 5.8876 -2.2258 1.4875 37 1 6.0345 -0.6646 2.3297 38 1 5.8214 -1.8229 4.5122 39 1 5.6745 -3.3838 3.6693 40 1 7.9571 -3.0648 6.6891 41 1 7.0146 -4.3283 5.7882 42 1 9.0776 -5.5078 5.1187 43 1 8.4097 -7.3866 8.0820 44 1 10.2734 -3.6793 3.9866 45 1 10.1813 -2.6213 5.4587 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855473703.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:53 Heat of formation + Delta-G solvation = -50.452593 kcal Electronic energy + Delta-G solvation = -19689.767342 eV Core-core repulsion = 16706.708968 eV Total energy + Delta-G solvation = -2983.058374 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.46444 -37.67672 -37.09838 -34.73383 -32.69721 -31.22713 -29.21807 -27.45597 -26.80478 -25.00548 -24.89759 -22.62820 -21.00316 -20.30822 -19.97477 -18.02860 -16.86514 -16.13292 -16.08343 -15.36198 -15.06128 -14.72978 -14.52007 -14.38773 -13.97847 -13.65329 -12.92170 -12.74951 -12.57346 -12.40928 -12.23638 -11.95618 -11.88638 -11.68008 -11.52313 -11.32684 -11.18925 -11.06497 -10.96978 -10.80476 -10.79423 -10.68575 -10.47851 -10.41981 -10.34969 -9.57888 -9.21102 -8.95103 -8.58976 -7.83931 -6.19438 -4.24961 3.22576 3.22892 3.30552 3.33539 3.63191 4.32310 4.46472 4.62048 4.68041 4.93040 4.97830 5.03917 5.10485 5.23788 5.28381 5.35906 5.41300 5.48125 5.53848 5.56610 5.66624 5.71787 5.79030 5.82732 5.86060 5.93938 5.99024 6.03300 6.06825 6.15059 6.19387 6.22150 6.28590 6.37014 6.45190 6.47078 6.57831 6.68339 6.82053 7.54857 7.78524 8.17504 8.57306 8.78955 8.81150 9.41868 10.90339 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.039730 B = 0.002536 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.580393 B =11038.562467 C =11509.974069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.099 4.099 3 C -0.150 4.150 4 C -0.115 4.115 5 C -0.121 4.121 6 C -0.120 4.120 7 C -0.101 4.101 8 C -0.133 4.133 9 C 0.529 3.471 10 O -0.569 6.569 11 N -0.646 5.646 12 C 0.098 3.902 13 C 0.034 3.966 14 C -0.517 4.517 15 H 0.063 0.937 16 C 0.067 3.933 17 N -0.886 5.886 18 Si 0.896 3.104 19 H -0.279 1.279 20 H -0.286 1.286 21 H -0.272 1.272 22 C 0.098 3.902 23 H 0.053 0.947 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.068 0.932 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.073 0.927 41 H 0.059 0.941 42 H 0.068 0.932 43 H 0.264 0.736 44 H 0.056 0.944 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.947 10.469 -9.601 19.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.118 4.118 3 C -0.207 4.207 4 C -0.153 4.153 5 C -0.158 4.158 6 C -0.158 4.158 7 C -0.139 4.139 8 C -0.173 4.173 9 C 0.319 3.681 10 O -0.450 6.450 11 N -0.379 5.379 12 C -0.025 4.025 13 C 0.015 3.985 14 C -0.555 4.555 15 H 0.082 0.918 16 C -0.136 4.136 17 N -0.523 5.523 18 Si 0.724 3.276 19 H -0.205 1.205 20 H -0.211 1.211 21 H -0.197 1.197 22 C -0.024 4.024 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.087 0.913 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.105 0.895 39 H 0.107 0.893 40 H 0.091 0.909 41 H 0.078 0.922 42 H 0.086 0.914 43 H 0.074 0.926 44 H 0.074 0.926 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -13.858 10.641 -10.201 20.233 hybrid contribution 0.325 -0.195 1.045 1.111 sum -13.533 10.446 -9.156 19.394 Atomic orbital electron populations 1.21848 0.95488 1.01605 1.01561 1.21142 0.95464 0.96485 0.98685 1.21898 1.01418 0.95934 1.01436 1.21667 0.95760 1.00328 0.97515 1.21646 0.95039 1.00882 0.98266 1.21627 0.95470 1.00663 0.98007 1.21323 0.94293 1.01124 0.97187 1.21582 0.92549 1.02832 1.00358 1.20223 0.89555 0.76631 0.81654 1.90620 1.70778 1.49476 1.34105 1.50069 1.11315 1.55945 1.20601 1.23643 1.02073 0.94115 0.82638 1.20386 0.90999 0.91907 0.95180 1.20921 1.17796 1.13196 1.03587 0.91842 1.25039 0.94923 0.95259 0.98377 1.69955 1.28392 1.16567 1.37398 0.86526 0.80395 0.77407 0.83312 1.20510 1.21127 1.19685 1.23317 0.82702 0.98457 0.97933 0.92787 0.92925 0.92779 0.91331 0.92800 0.92263 0.93065 0.92053 0.92057 0.91760 0.92036 0.91993 0.92073 0.91419 0.91531 0.89527 0.89309 0.90853 0.92208 0.91382 0.92634 0.92581 0.91022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.19 37.16 0.34 -0.66 16 2 C -0.10 -0.75 2.92 -90.62 -0.26 -1.02 16 3 C -0.15 -1.10 8.95 37.16 0.33 -0.77 16 4 C -0.12 -0.94 4.68 -26.73 -0.13 -1.07 16 5 C -0.12 -1.12 4.97 -26.73 -0.13 -1.26 16 6 C -0.12 -1.25 5.21 -26.73 -0.14 -1.39 16 7 C -0.10 -1.34 4.50 -26.73 -0.12 -1.47 16 8 C -0.13 -2.00 5.53 -27.89 -0.15 -2.15 16 9 C 0.53 10.49 8.08 -10.98 -0.09 10.40 16 10 O -0.57 -12.92 16.76 5.56 0.09 -12.83 16 11 N -0.65 -13.39 3.69 -185.07 -0.68 -14.08 16 12 C 0.10 2.06 8.00 -8.37 -0.07 1.99 16 13 C 0.03 0.81 3.79 -91.13 -0.35 0.47 16 14 C -0.52 -13.17 8.83 -34.44 -0.30 -13.48 16 15 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 16 C 0.07 1.75 5.46 -17.82 -0.10 1.66 16 17 N -0.89 -24.07 13.26 55.43 0.74 -23.33 16 18 Si 0.90 20.01 29.54 -169.99 -5.02 14.99 16 19 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 20 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 22 C 0.10 2.10 8.17 -8.52 -0.07 2.03 16 23 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 24 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.05 0.36 8.14 -51.92 -0.42 -0.07 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.45 6.57 -51.93 -0.34 0.11 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.60 6.57 -51.93 -0.34 0.26 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.97 8.10 -51.93 -0.42 0.55 16 37 H 0.07 0.93 8.10 -51.93 -0.42 0.51 16 38 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 39 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.07 1.51 8.10 -51.93 -0.42 1.09 16 41 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.07 1.75 8.11 -51.93 -0.42 1.33 16 43 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 44 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.07 1.47 8.10 -51.92 -0.42 1.05 16 LS Contribution 364.75 15.07 5.50 5.50 Total: -1.00 -28.34 364.75 -9.29 -37.62 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -8.67 Total: -1.17 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: -1.23 Total: -6.70 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: 0.05 Total: -37.41 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: 0.09 Total: -12.83 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -28.34 -9.29 -37.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855473703.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.830 kcal (2) G-P(sol) polarization free energy of solvation -28.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds