Wall clock time and date at job start Mon Mar 30 2020 07:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46668 * 2 1 4 4 C 1.52997 * 109.47153 * 119.99896 * 2 1 3 5 5 C 1.52996 * 109.47131 * 175.00442 * 4 2 1 6 6 C 1.52997 * 109.47131 * 180.02562 * 5 4 2 7 7 C 1.53006 * 109.47127 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47127 * 180.02562 * 7 6 5 9 9 C 1.50696 * 109.47055 * 179.97438 * 8 7 6 10 10 O 1.21279 * 120.00218 * 0.02562 * 9 8 7 11 11 N 1.34784 * 120.00109 * 179.97438 * 9 8 7 12 12 C 1.47069 * 136.05284 * 359.63697 * 11 9 8 13 13 C 1.53758 * 87.88391 * 152.95561 * 12 11 9 14 14 C 1.50709 * 114.26562 * 139.78735 * 13 12 11 15 15 H 1.07996 * 120.00245 * 266.47753 * 14 13 12 16 16 C 1.37875 * 119.99790 * 86.47657 * 14 13 12 17 17 N 1.31522 * 120.00005 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00056 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46954 * 89.99997 * 18 16 14 20 20 H 1.48497 * 109.47138 * 209.99919 * 18 16 14 21 21 H 1.48494 * 109.46859 * 330.00163 * 18 16 14 22 22 C 1.47059 * 136.05949 * 179.97438 * 11 9 8 23 23 H 1.08997 * 109.47855 * 299.99973 * 1 2 3 24 24 H 1.08995 * 109.47757 * 60.00479 * 1 2 3 25 25 H 1.09009 * 109.47141 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47159 * 240.00027 * 2 1 3 27 27 H 1.08993 * 109.47183 * 59.99930 * 3 2 1 28 28 H 1.09003 * 109.46567 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47144 * 299.99696 * 3 2 1 30 30 H 1.09000 * 109.47611 * 54.99820 * 4 2 1 31 31 H 1.09001 * 109.46832 * 295.00117 * 4 2 1 32 32 H 1.08996 * 109.47452 * 60.00000 * 5 4 2 33 33 H 1.09001 * 109.46997 * 299.99574 * 5 4 2 34 34 H 1.09001 * 109.47502 * 60.00153 * 6 5 4 35 35 H 1.09001 * 109.47289 * 299.99950 * 6 5 4 36 36 H 1.09001 * 109.47002 * 299.99574 * 7 6 5 37 37 H 1.08993 * 109.46955 * 60.00011 * 7 6 5 38 38 H 1.09001 * 109.47289 * 299.99953 * 8 7 6 39 39 H 1.09004 * 109.47261 * 59.99697 * 8 7 6 40 40 H 1.08995 * 113.46811 * 267.68445 * 12 11 9 41 41 H 1.09000 * 113.46782 * 38.13190 * 12 11 9 42 42 H 1.08994 * 114.40031 * 272.67293 * 13 12 11 43 43 H 0.96999 * 119.99914 * 179.97438 * 17 16 14 44 44 H 1.09000 * 113.46879 * 321.87522 * 22 11 9 45 45 H 1.09010 * 113.46500 * 92.25198 * 22 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.8309 1.1880 6 6 4.0747 -1.5527 2.4369 7 6 5.5996 -1.6629 2.3754 8 6 6.1095 -2.3853 3.6240 9 6 7.6112 -2.4944 3.5631 10 8 8.2144 -2.0389 2.6146 11 7 8.2843 -3.0974 4.5631 12 6 7.9333 -3.7437 5.8367 13 6 9.2086 -4.5906 5.6928 14 6 9.9637 -4.7968 6.9807 15 1 10.7687 -4.1281 7.2477 16 6 9.6270 -5.8391 7.8180 17 7 8.6463 -6.6531 7.4931 18 14 10.5625 -6.0942 9.4146 19 1 9.8998 -5.3326 10.5037 20 1 10.5730 -7.5392 9.7566 21 1 11.9581 -5.6136 9.2527 22 6 9.6931 -3.3933 4.8638 23 1 -0.3635 0.5138 0.8899 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.6765 1.9563 0.8899 28 1 3.1299 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6054 -1.7198 1.2953 31 1 1.7516 -0.1582 2.1369 32 1 3.9994 0.1676 1.1421 33 1 3.8532 -1.3939 0.3003 34 1 3.6402 -2.5513 2.4824 35 1 3.7863 -0.9902 3.3249 36 1 5.8876 -2.2258 1.4875 37 1 6.0345 -0.6646 2.3297 38 1 5.8214 -1.8229 4.5122 39 1 5.6745 -3.3838 3.6693 40 1 7.9571 -3.0648 6.6891 41 1 7.0146 -4.3283 5.7882 42 1 9.0776 -5.5078 5.1187 43 1 8.4097 -7.3866 8.0820 44 1 10.2734 -3.6793 3.9866 45 1 10.1813 -2.6213 5.4587 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855473703.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:52 Heat of formation + Delta-G solvation = -63.561812 kcal Electronic energy + Delta-G solvation = -19690.335800 eV Core-core repulsion = 16706.708968 eV Total energy + Delta-G solvation = -2983.626832 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.12603 -38.98681 -38.14843 -35.70005 -34.64663 -32.30548 -30.79869 -28.07183 -27.94973 -26.75424 -26.47548 -23.68365 -22.05582 -21.73743 -20.69959 -19.66320 -18.74058 -17.76441 -17.11144 -16.68229 -16.48796 -16.25548 -15.78940 -15.19071 -15.06042 -14.66355 -14.25174 -14.07266 -13.92315 -13.45291 -13.27138 -13.16685 -13.00726 -12.96536 -12.77108 -12.74642 -12.57420 -12.37114 -12.18836 -12.08998 -11.92815 -11.53740 -11.43325 -11.41246 -11.24539 -11.16829 -11.05947 -10.68868 -10.50129 -9.55691 -8.16637 -6.27756 1.47667 1.49924 1.59252 1.64983 2.04532 2.46699 3.13478 3.53016 3.78813 3.96533 4.06156 4.08680 4.13249 4.25715 4.33759 4.41637 4.42951 4.53406 4.61592 4.66413 4.69921 4.74192 4.80613 4.82484 4.86460 4.92715 4.97438 4.99694 5.02784 5.04315 5.10467 5.13607 5.19237 5.28994 5.38391 5.39051 5.46894 5.58858 5.59439 5.59542 5.81403 6.23293 6.80757 6.93782 7.18136 7.42302 8.93351 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.039730 B = 0.002536 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.580393 B =11038.562467 C =11509.974069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.101 4.101 3 C -0.149 4.149 4 C -0.111 4.111 5 C -0.119 4.119 6 C -0.112 4.112 7 C -0.095 4.095 8 C -0.125 4.125 9 C 0.522 3.478 10 O -0.601 6.601 11 N -0.649 5.649 12 C 0.114 3.886 13 C 0.022 3.978 14 C -0.528 4.528 15 H 0.066 0.934 16 C 0.020 3.980 17 N -0.918 5.918 18 Si 0.959 3.041 19 H -0.272 1.272 20 H -0.287 1.287 21 H -0.268 1.268 22 C 0.101 3.899 23 H 0.055 0.945 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.065 0.935 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.052 0.948 37 H 0.056 0.944 38 H 0.108 0.892 39 H 0.101 0.899 40 H 0.082 0.918 41 H 0.064 0.936 42 H 0.038 0.962 43 H 0.265 0.735 44 H 0.052 0.948 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.998 11.272 -8.887 20.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.119 4.119 3 C -0.207 4.207 4 C -0.149 4.149 5 C -0.156 4.156 6 C -0.150 4.150 7 C -0.133 4.133 8 C -0.165 4.165 9 C 0.315 3.685 10 O -0.484 6.484 11 N -0.382 5.382 12 C -0.008 4.008 13 C 0.002 3.998 14 C -0.566 4.566 15 H 0.084 0.916 16 C -0.180 4.180 17 N -0.556 5.556 18 Si 0.785 3.215 19 H -0.198 1.198 20 H -0.213 1.213 21 H -0.192 1.192 22 C -0.021 4.021 23 H 0.074 0.926 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.126 0.874 39 H 0.119 0.881 40 H 0.100 0.900 41 H 0.082 0.918 42 H 0.056 0.944 43 H 0.074 0.926 44 H 0.071 0.929 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -14.915 11.457 -9.490 21.066 hybrid contribution 0.691 -0.440 0.752 1.112 sum -14.224 11.017 -8.738 20.001 Atomic orbital electron populations 1.21833 0.94785 1.01832 1.01912 1.21150 0.96068 0.96447 0.98238 1.21894 1.01040 0.95927 1.01800 1.21626 0.94726 1.00576 0.97934 1.21617 0.95929 1.00538 0.97553 1.21570 0.93055 1.01402 0.98958 1.21283 0.96326 0.99981 0.95754 1.21652 0.88640 1.04129 1.02053 1.21134 0.91437 0.75436 0.80511 1.90603 1.71924 1.50742 1.35116 1.50120 1.10907 1.56310 1.20852 1.23388 1.00803 0.93612 0.83006 1.20275 0.93015 0.91700 0.94772 1.21207 1.17934 1.13317 1.04167 0.91608 1.25773 0.95725 0.95069 1.01417 1.70058 1.29809 1.17159 1.38608 0.85532 0.79267 0.77084 0.79635 1.19755 1.21277 1.19224 1.23214 0.83486 0.97820 0.97594 0.92592 0.92444 0.92627 0.91690 0.92622 0.92842 0.92546 0.91883 0.91767 0.91936 0.92539 0.91354 0.91022 0.92888 0.92512 0.87428 0.88082 0.89969 0.91795 0.94352 0.92614 0.92926 0.89941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.19 71.98 0.66 -1.08 16 2 C -0.10 -1.38 2.92 -10.79 -0.03 -1.41 16 3 C -0.15 -2.01 8.95 71.98 0.64 -1.36 16 4 C -0.11 -1.62 4.68 30.59 0.14 -1.48 16 5 C -0.12 -2.04 4.97 30.59 0.15 -1.89 16 6 C -0.11 -2.11 5.21 30.60 0.16 -1.95 16 7 C -0.10 -2.42 4.50 30.60 0.14 -2.28 16 8 C -0.13 -3.53 5.53 29.85 0.16 -3.36 16 9 C 0.52 20.30 8.08 87.65 0.71 21.01 16 10 O -0.60 -27.23 16.76 -3.03 -0.05 -27.28 16 11 N -0.65 -26.44 3.69 -857.83 -3.16 -29.60 16 12 C 0.11 4.71 8.00 83.27 0.67 5.38 16 13 C 0.02 1.03 3.79 -11.12 -0.04 0.99 16 14 C -0.53 -26.76 8.83 25.60 0.23 -26.54 16 15 H 0.07 3.23 7.81 -2.91 -0.02 3.21 16 16 C 0.02 1.05 5.46 84.65 0.46 1.51 16 17 N -0.92 -49.94 13.26 21.45 0.28 -49.65 16 18 Si 0.96 40.56 29.54 68.60 2.03 42.59 16 19 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 20 H -0.29 -12.11 7.11 99.48 0.71 -11.41 16 21 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 22 C 0.10 4.32 8.17 83.17 0.68 5.00 16 23 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 24 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 26 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.05 0.77 6.57 -2.39 -0.02 0.75 16 29 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.06 1.10 6.57 -2.39 -0.02 1.08 16 33 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.05 1.49 8.10 -2.39 -0.02 1.47 16 37 H 0.06 1.54 8.10 -2.39 -0.02 1.52 16 38 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 39 H 0.10 2.65 8.14 -2.38 -0.02 2.63 16 40 H 0.08 3.26 8.10 -2.39 -0.02 3.24 16 41 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 42 H 0.04 2.03 8.11 -2.39 -0.02 2.01 16 43 H 0.26 13.69 8.31 -92.71 -0.77 12.92 16 44 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 45 H 0.08 3.32 8.10 -2.38 -0.02 3.30 16 Total: -1.00 -59.48 364.75 4.74 -54.75 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: 0.91 Total: 16.67 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: 4.73 Total: -7.47 kcal Atomic # 7 Polarization: -76.38 SS G_CDS: -2.88 Total: -79.26 kcal Atomic # 8 Polarization: -27.23 SS G_CDS: -0.05 Total: -27.28 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 2.03 Total: 42.59 kcal Total: -59.48 4.74 -54.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855473703.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.814 kcal (2) G-P(sol) polarization free energy of solvation -59.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds