Wall clock time and date at job start Mon Mar 30 2020 07:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46798 * 2 1 4 4 C 1.53005 * 109.47072 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47072 * 179.97438 * 4 3 2 6 6 C 1.52995 * 109.46944 * 184.37611 * 5 4 3 7 7 H 1.09000 * 109.47477 * 54.59309 * 6 5 4 8 8 C 1.52998 * 109.47198 * 294.59288 * 6 5 4 9 9 C 1.52996 * 109.47118 * 301.23055 * 8 6 5 10 10 C 1.50696 * 109.46925 * 174.58896 * 6 5 4 11 11 O 1.21283 * 120.00315 * 23.18082 * 10 6 5 12 12 N 1.34783 * 120.00120 * 203.17301 * 10 6 5 13 13 C 1.47575 * 134.48985 * 176.30416 * 12 10 6 14 14 C 1.53954 * 86.11449 * 155.36101 * 13 12 10 15 15 C 1.50700 * 113.74207 * 137.95074 * 14 13 12 16 16 H 1.08003 * 119.99799 * 0.02562 * 15 14 13 17 17 C 1.37874 * 120.00206 * 180.02562 * 15 14 13 18 18 N 1.31509 * 119.99776 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00172 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47080 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47271 * 120.00002 * 19 17 15 22 22 H 1.48505 * 109.47012 * 240.00128 * 19 17 15 23 23 C 1.47578 * 134.49029 * 356.30715 * 12 10 6 24 24 H 1.08991 * 109.46921 * 299.99195 * 1 2 3 25 25 H 1.08996 * 109.47429 * 60.00313 * 1 2 3 26 26 H 1.09005 * 109.46809 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47232 * 240.00463 * 2 1 3 28 28 H 1.08991 * 109.47581 * 120.00171 * 2 1 3 29 29 H 1.09002 * 109.46851 * 60.00229 * 3 2 1 30 30 H 1.09000 * 109.47287 * 299.99779 * 3 2 1 31 31 H 1.09001 * 109.46792 * 60.00640 * 4 3 2 32 32 H 1.08996 * 109.46923 * 300.00441 * 4 3 2 33 33 H 1.08999 * 109.46500 * 64.37573 * 5 4 3 34 34 H 1.08999 * 109.47238 * 304.37883 * 5 4 3 35 35 H 1.09000 * 109.47374 * 61.23043 * 8 6 5 36 36 H 1.09003 * 109.47165 * 181.23477 * 8 6 5 37 37 H 1.09009 * 109.47278 * 306.68556 * 9 8 6 38 38 H 1.09000 * 109.47241 * 66.68133 * 9 8 6 39 39 H 1.08998 * 109.47490 * 186.68702 * 9 8 6 40 40 H 1.09004 * 113.77624 * 41.06370 * 13 12 10 41 41 H 1.09007 * 113.77195 * 269.65771 * 13 12 10 42 42 H 1.08999 * 113.74192 * 269.26023 * 14 13 12 43 43 H 0.97008 * 120.00201 * 179.97438 * 18 17 15 44 44 H 1.08992 * 113.77176 * 90.34046 * 23 12 10 45 45 H 1.08996 * 113.77095 * 318.93498 * 23 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0799 2.8852 -0.0013 6 6 5.6058 2.8866 -0.1120 7 1 5.9071 2.3128 -0.9884 8 6 6.2089 2.2540 1.1438 9 6 5.7611 3.0413 2.3768 10 6 6.0984 4.3044 -0.2464 11 8 5.4166 5.2239 0.1546 12 7 7.2967 4.5508 -0.8120 13 6 8.0437 5.7749 -1.1605 14 6 9.3104 4.9063 -1.0544 15 6 10.3161 5.1642 -2.1468 16 1 10.1105 5.9037 -2.9065 17 6 11.4987 4.4560 -2.1762 18 7 11.7493 3.5558 -1.2508 19 14 12.7456 4.7761 -3.5298 20 1 12.2287 5.8294 -4.4400 21 1 14.0258 5.2266 -2.9271 22 1 12.9733 3.5262 -4.2987 23 6 8.3886 3.7049 -1.3316 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 3.9329 0.9290 -0.8909 32 1 3.9337 0.9286 0.8890 33 1 3.7823 3.3760 0.9253 34 1 3.6535 3.4209 -0.8494 35 1 5.8700 1.2215 1.2292 36 1 7.2965 2.2748 1.0747 37 1 5.9951 4.0970 2.2386 38 1 4.6862 2.9223 2.5133 39 1 6.2829 2.6658 3.2570 40 1 7.9829 6.5573 -0.4039 41 1 7.8442 6.1395 -2.1682 42 1 9.7548 4.8981 -0.0592 43 1 12.5811 3.0573 -1.2717 44 1 8.2904 3.4614 -2.3895 45 1 8.6031 2.8345 -0.7116 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855474000.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:52 Heat of formation + Delta-G solvation = -49.359771 kcal Electronic energy + Delta-G solvation = -20724.291912 eV Core-core repulsion = 17741.280927 eV Total energy + Delta-G solvation = -2983.010985 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.71551 -37.61413 -36.31605 -34.66457 -32.66653 -31.32142 -29.38911 -28.01240 -25.66861 -25.07498 -24.40098 -22.79622 -21.35757 -20.70540 -19.42996 -17.74391 -16.88583 -16.21551 -15.93619 -15.44641 -15.12246 -14.61856 -14.37877 -14.00325 -13.73588 -13.38296 -13.22551 -12.73329 -12.47575 -12.27704 -12.09781 -11.93632 -11.83020 -11.57813 -11.34820 -11.23271 -11.15956 -11.02297 -10.86983 -10.76676 -10.71279 -10.65113 -10.41947 -10.34315 -10.26187 -9.51105 -9.26324 -8.82147 -8.58316 -7.78522 -6.18548 -4.23839 3.22044 3.25672 3.31187 3.34735 3.64464 4.33042 4.61250 4.76766 4.86428 4.97224 5.04764 5.10968 5.12768 5.26331 5.39433 5.42164 5.52371 5.61099 5.63035 5.73720 5.81328 5.85855 5.87779 5.94306 5.99471 6.07862 6.09042 6.12507 6.20583 6.23721 6.30435 6.32791 6.39575 6.42261 6.43320 6.56839 6.62432 6.73124 6.85553 7.56000 7.79346 8.17676 8.58783 8.79981 8.84868 9.43015 10.91092 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.029425 B = 0.003489 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.339032 B = 8023.638174 C = 8241.584584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.120 4.120 4 C -0.120 4.120 5 C -0.100 4.100 6 C -0.102 4.102 7 H 0.085 0.915 8 C -0.112 4.112 9 C -0.154 4.154 10 C 0.531 3.469 11 O -0.567 6.567 12 N -0.640 5.640 13 C 0.101 3.899 14 C 0.034 3.966 15 C -0.518 4.518 16 H 0.063 0.937 17 C 0.067 3.933 18 N -0.886 5.886 19 Si 0.894 3.106 20 H -0.271 1.271 21 H -0.283 1.283 22 H -0.283 1.283 23 C 0.104 3.896 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.061 0.939 38 H 0.055 0.945 39 H 0.051 0.949 40 H 0.059 0.941 41 H 0.072 0.928 42 H 0.064 0.936 43 H 0.263 0.737 44 H 0.073 0.927 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.579 -7.289 2.812 16.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.157 4.157 4 C -0.157 4.157 5 C -0.138 4.138 6 C -0.123 4.123 7 H 0.103 0.897 8 C -0.150 4.150 9 C -0.211 4.211 10 C 0.320 3.680 11 O -0.447 6.447 12 N -0.373 5.373 13 C -0.021 4.021 14 C 0.015 3.985 15 C -0.556 4.556 16 H 0.081 0.919 17 C -0.136 4.136 18 N -0.523 5.523 19 Si 0.722 3.278 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.209 1.209 23 C -0.019 4.019 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.090 0.910 42 H 0.082 0.918 43 H 0.073 0.927 44 H 0.091 0.909 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.978 -6.979 3.167 16.825 hybrid contribution 0.787 -0.036 -0.834 1.147 sum -14.191 -7.015 2.333 16.001 Atomic orbital electron populations 1.21782 0.96150 1.01347 1.01763 1.21543 0.95617 0.97206 1.01926 1.21619 0.95637 0.96403 1.02083 1.21657 0.95060 0.96926 1.02100 1.21440 0.92811 0.96311 1.03255 1.21286 0.96781 0.94134 1.00099 0.89670 1.21442 1.01009 0.99134 0.93381 1.21843 1.00986 1.01250 0.97065 1.20236 0.79361 0.90766 0.77588 1.90607 1.56108 1.46887 1.51138 1.50471 1.16135 1.12490 1.58222 1.23470 0.90692 0.89151 0.98803 1.20496 0.90035 0.89061 0.98928 1.21022 1.01784 1.22078 1.10741 0.91881 1.25023 0.97879 0.94832 0.95869 1.69957 1.25137 1.23876 1.33372 0.86499 0.81204 0.78232 0.81878 1.19597 1.20888 1.20916 1.23698 0.83007 0.97521 0.97642 0.92824 0.92825 0.92993 0.92118 0.92125 0.92049 0.92101 0.92088 0.91728 0.90679 0.92036 0.91181 0.91248 0.91998 0.92588 0.93033 0.92226 0.90969 0.91804 0.92726 0.90899 0.91866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.91 37.16 0.37 -0.78 16 2 C -0.13 -1.04 5.93 -26.73 -0.16 -1.20 16 3 C -0.12 -1.14 5.21 -26.73 -0.14 -1.28 16 4 C -0.12 -1.27 4.87 -26.73 -0.13 -1.40 16 5 C -0.10 -1.35 3.86 -26.73 -0.10 -1.45 16 6 C -0.10 -1.55 2.26 -91.78 -0.21 -1.76 16 7 H 0.09 1.25 8.08 -51.93 -0.42 0.83 16 8 C -0.11 -1.56 5.43 -26.73 -0.15 -1.71 16 9 C -0.15 -2.17 9.20 37.16 0.34 -1.83 16 10 C 0.53 10.39 6.18 -10.98 -0.07 10.32 16 11 O -0.57 -12.59 16.23 5.55 0.09 -12.50 16 12 N -0.64 -13.13 3.61 -178.44 -0.64 -13.78 16 13 C 0.10 2.14 8.39 -2.97 -0.02 2.11 16 14 C 0.03 0.80 3.62 -90.84 -0.33 0.47 16 15 C -0.52 -13.19 8.77 -34.44 -0.30 -13.49 16 16 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 17 C 0.07 1.74 5.46 -17.82 -0.10 1.65 16 18 N -0.89 -23.97 13.27 55.43 0.74 -23.23 16 19 Si 0.89 20.04 29.54 -169.99 -5.02 15.02 16 20 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 23 C 0.10 2.18 8.12 -2.97 -0.02 2.15 16 24 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.65 6.82 -51.93 -0.35 0.30 16 33 H 0.07 1.07 6.18 -51.93 -0.32 0.75 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.82 6.74 -51.93 -0.35 0.47 16 36 H 0.07 1.07 7.70 -51.93 -0.40 0.67 16 37 H 0.06 1.05 6.56 -51.92 -0.34 0.71 16 38 H 0.06 0.71 6.67 -51.93 -0.35 0.37 16 39 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.07 1.48 8.09 -51.93 -0.42 1.06 16 42 H 0.06 1.64 8.13 -51.93 -0.42 1.21 16 43 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 44 H 0.07 1.51 8.09 -51.93 -0.42 1.09 16 45 H 0.06 1.31 7.70 -51.93 -0.40 0.91 16 LS Contribution 357.62 15.07 5.39 5.39 Total: -1.00 -27.90 357.62 -8.86 -36.76 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -8.39 Total: 0.54 kcal Atomic # 6 Polarization: -7.18 SS G_CDS: -1.02 Total: -8.20 kcal Atomic # 7 Polarization: -37.10 SS G_CDS: 0.09 Total: -37.01 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: 0.09 Total: -12.50 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -27.90 -8.86 -36.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855474000.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.603 kcal (2) G-P(sol) polarization free energy of solvation -27.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds