Wall clock time and date at job start Mon Mar 30 2020 07:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46798 * 2 1 4 4 C 1.53005 * 109.47072 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47072 * 179.97438 * 4 3 2 6 6 C 1.52995 * 109.46944 * 184.37611 * 5 4 3 7 7 H 1.09000 * 109.47477 * 54.59309 * 6 5 4 8 8 C 1.52998 * 109.47198 * 294.59288 * 6 5 4 9 9 C 1.52996 * 109.47118 * 301.23055 * 8 6 5 10 10 C 1.50696 * 109.46925 * 174.58896 * 6 5 4 11 11 O 1.21283 * 120.00315 * 23.18082 * 10 6 5 12 12 N 1.34783 * 120.00120 * 203.17301 * 10 6 5 13 13 C 1.47575 * 134.48985 * 176.30416 * 12 10 6 14 14 C 1.53954 * 86.11449 * 155.36101 * 13 12 10 15 15 C 1.50700 * 113.74207 * 137.95074 * 14 13 12 16 16 H 1.08003 * 119.99799 * 0.02562 * 15 14 13 17 17 C 1.37874 * 120.00206 * 180.02562 * 15 14 13 18 18 N 1.31509 * 119.99776 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00172 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47080 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47271 * 120.00002 * 19 17 15 22 22 H 1.48505 * 109.47012 * 240.00128 * 19 17 15 23 23 C 1.47578 * 134.49029 * 356.30715 * 12 10 6 24 24 H 1.08991 * 109.46921 * 299.99195 * 1 2 3 25 25 H 1.08996 * 109.47429 * 60.00313 * 1 2 3 26 26 H 1.09005 * 109.46809 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47232 * 240.00463 * 2 1 3 28 28 H 1.08991 * 109.47581 * 120.00171 * 2 1 3 29 29 H 1.09002 * 109.46851 * 60.00229 * 3 2 1 30 30 H 1.09000 * 109.47287 * 299.99779 * 3 2 1 31 31 H 1.09001 * 109.46792 * 60.00640 * 4 3 2 32 32 H 1.08996 * 109.46923 * 300.00441 * 4 3 2 33 33 H 1.08999 * 109.46500 * 64.37573 * 5 4 3 34 34 H 1.08999 * 109.47238 * 304.37883 * 5 4 3 35 35 H 1.09000 * 109.47374 * 61.23043 * 8 6 5 36 36 H 1.09003 * 109.47165 * 181.23477 * 8 6 5 37 37 H 1.09009 * 109.47278 * 306.68556 * 9 8 6 38 38 H 1.09000 * 109.47241 * 66.68133 * 9 8 6 39 39 H 1.08998 * 109.47490 * 186.68702 * 9 8 6 40 40 H 1.09004 * 113.77624 * 41.06370 * 13 12 10 41 41 H 1.09007 * 113.77195 * 269.65771 * 13 12 10 42 42 H 1.08999 * 113.74192 * 269.26023 * 14 13 12 43 43 H 0.97008 * 120.00201 * 179.97438 * 18 17 15 44 44 H 1.08992 * 113.77176 * 90.34046 * 23 12 10 45 45 H 1.08996 * 113.77095 * 318.93498 * 23 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0799 2.8852 -0.0013 6 6 5.6058 2.8866 -0.1120 7 1 5.9071 2.3128 -0.9884 8 6 6.2089 2.2540 1.1438 9 6 5.7611 3.0413 2.3768 10 6 6.0984 4.3044 -0.2464 11 8 5.4166 5.2239 0.1546 12 7 7.2967 4.5508 -0.8120 13 6 8.0437 5.7749 -1.1605 14 6 9.3104 4.9063 -1.0544 15 6 10.3161 5.1642 -2.1468 16 1 10.1105 5.9037 -2.9065 17 6 11.4987 4.4560 -2.1762 18 7 11.7493 3.5558 -1.2508 19 14 12.7456 4.7761 -3.5298 20 1 12.2287 5.8294 -4.4400 21 1 14.0258 5.2266 -2.9271 22 1 12.9733 3.5262 -4.2987 23 6 8.3886 3.7049 -1.3316 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 3.9329 0.9290 -0.8909 32 1 3.9337 0.9286 0.8890 33 1 3.7823 3.3760 0.9253 34 1 3.6535 3.4209 -0.8494 35 1 5.8700 1.2215 1.2292 36 1 7.2965 2.2748 1.0747 37 1 5.9951 4.0970 2.2386 38 1 4.6862 2.9223 2.5133 39 1 6.2829 2.6658 3.2570 40 1 7.9829 6.5573 -0.4039 41 1 7.8442 6.1395 -2.1682 42 1 9.7548 4.8981 -0.0592 43 1 12.5811 3.0573 -1.2717 44 1 8.2904 3.4614 -2.3895 45 1 8.6031 2.8345 -0.7116 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855474000.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:52 Heat of formation + Delta-G solvation = -62.474466 kcal Electronic energy + Delta-G solvation = -20724.860608 eV Core-core repulsion = 17741.280927 eV Total energy + Delta-G solvation = -2983.579681 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.28759 -39.13796 -37.50170 -35.67268 -34.61997 -32.22272 -31.05514 -29.17891 -27.19524 -26.85382 -25.67167 -23.86248 -22.45898 -21.79237 -20.86946 -19.31068 -18.73714 -17.75203 -16.98710 -16.93150 -16.47322 -16.29667 -15.69187 -15.34656 -14.67375 -14.52188 -14.21896 -14.04375 -13.92886 -13.63207 -13.50788 -13.31096 -13.09224 -12.85850 -12.80328 -12.77809 -12.52447 -12.22940 -12.21860 -12.03814 -11.90432 -11.64666 -11.49552 -11.35510 -11.31310 -11.23464 -11.13816 -10.62370 -10.39947 -9.49612 -8.16268 -6.27285 1.45469 1.49167 1.59452 1.69460 2.05216 2.46221 3.14533 3.47831 3.72432 3.89033 4.07621 4.12598 4.19050 4.26686 4.36250 4.41941 4.45403 4.49666 4.56988 4.59841 4.65882 4.70603 4.74127 4.79268 4.87183 4.92600 4.95115 4.96340 5.01516 5.11163 5.15845 5.16520 5.20726 5.25398 5.27689 5.36058 5.47319 5.51676 5.58958 5.59936 5.81753 6.23217 6.80654 6.95021 7.23307 7.42740 8.93588 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.029425 B = 0.003489 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.339032 B = 8023.638174 C = 8241.584584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.123 4.123 3 C -0.119 4.119 4 C -0.112 4.112 5 C -0.093 4.093 6 C -0.096 4.096 7 H 0.096 0.904 8 C -0.108 4.108 9 C -0.151 4.151 10 C 0.525 3.475 11 O -0.596 6.596 12 N -0.643 5.643 13 C 0.104 3.896 14 C 0.024 3.976 15 C -0.530 4.530 16 H 0.064 0.936 17 C 0.021 3.979 18 N -0.917 5.917 19 Si 0.957 3.043 20 H -0.266 1.266 21 H -0.284 1.284 22 H -0.279 1.279 23 C 0.120 3.880 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.048 0.952 35 H 0.103 0.897 36 H 0.052 0.948 37 H 0.025 0.975 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.057 0.943 41 H 0.082 0.918 42 H 0.034 0.966 43 H 0.265 0.735 44 H 0.079 0.921 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.335 -8.752 2.280 17.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C -0.156 4.156 4 C -0.150 4.150 5 C -0.131 4.131 6 C -0.117 4.117 7 H 0.114 0.886 8 C -0.146 4.146 9 C -0.208 4.208 10 C 0.317 3.683 11 O -0.478 6.478 12 N -0.376 5.376 13 C -0.018 4.018 14 C 0.005 3.995 15 C -0.568 4.568 16 H 0.082 0.918 17 C -0.179 4.179 18 N -0.555 5.555 19 Si 0.783 3.217 20 H -0.190 1.190 21 H -0.210 1.210 22 H -0.204 1.204 23 C -0.002 4.002 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.121 0.879 36 H 0.071 0.929 37 H 0.045 0.955 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.100 0.900 42 H 0.052 0.948 43 H 0.074 0.926 44 H 0.097 0.903 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.746 -8.443 2.632 18.060 hybrid contribution 0.996 0.480 -0.620 1.267 sum -14.751 -7.962 2.012 16.883 Atomic orbital electron populations 1.21787 0.95670 1.01910 1.01750 1.21525 0.96064 0.96222 1.02287 1.21599 0.94871 0.97321 1.01829 1.21608 0.95706 0.94695 1.02944 1.21395 0.91274 0.98258 1.02202 1.21367 0.98007 0.91078 1.01292 0.88603 1.21464 0.99897 1.00760 0.92460 1.21810 1.02161 0.98995 0.97827 1.21075 0.78499 0.92444 0.76262 1.90587 1.56752 1.48366 1.52091 1.50485 1.16678 1.11870 1.58583 1.23362 0.89864 0.89302 0.99287 1.20393 0.90723 0.91418 0.96981 1.21293 1.02500 1.21964 1.11044 0.91816 1.25737 0.99607 0.94669 0.97875 1.70055 1.25729 1.24795 1.34925 0.85516 0.78688 0.78205 0.79301 1.19013 1.20976 1.20441 1.23435 0.82218 0.96584 0.97962 0.92775 0.92958 0.92164 0.91900 0.91605 0.92195 0.92582 0.91436 0.90595 0.91649 0.93277 0.87861 0.92925 0.95546 0.91155 0.91535 0.92461 0.90032 0.94782 0.92636 0.90312 0.91610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.91 71.98 0.71 -1.29 16 2 C -0.12 -1.76 5.93 30.59 0.18 -1.58 16 3 C -0.12 -2.01 5.21 30.60 0.16 -1.85 16 4 C -0.11 -2.08 4.87 30.60 0.15 -1.93 16 5 C -0.09 -2.38 3.86 30.59 0.12 -2.26 16 6 C -0.10 -2.82 2.26 -11.54 -0.03 -2.84 16 7 H 0.10 2.62 8.08 -2.39 -0.02 2.60 16 8 C -0.11 -2.84 5.43 30.59 0.17 -2.67 16 9 C -0.15 -4.07 9.20 71.98 0.66 -3.40 16 10 C 0.53 20.51 6.18 87.65 0.54 21.05 16 11 O -0.60 -26.72 16.23 -3.04 -0.05 -26.77 16 12 N -0.64 -26.44 3.61 -836.83 -3.02 -29.46 16 13 C 0.10 4.46 8.39 86.48 0.73 5.19 16 14 C 0.02 1.15 3.62 -10.88 -0.04 1.11 16 15 C -0.53 -27.02 8.77 25.60 0.22 -26.79 16 16 H 0.06 3.17 7.81 -2.91 -0.02 3.15 16 17 C 0.02 1.10 5.46 84.65 0.46 1.57 16 18 N -0.92 -49.80 13.27 21.45 0.28 -49.52 16 19 Si 0.96 40.80 29.54 68.60 2.03 42.82 16 20 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 21 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 22 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 23 C 0.12 5.04 8.12 86.48 0.70 5.74 16 24 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 27 H 0.06 0.87 8.14 -2.39 -0.02 0.86 16 28 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.08 1.26 6.82 -2.39 -0.02 1.24 16 33 H 0.06 1.79 6.18 -2.39 -0.01 1.78 16 34 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.10 2.06 6.74 -2.39 -0.02 2.05 16 36 H 0.05 1.57 7.70 -2.39 -0.02 1.55 16 37 H 0.03 0.88 6.56 -2.38 -0.02 0.87 16 38 H 0.07 1.67 6.67 -2.39 -0.02 1.66 16 39 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 41 H 0.08 3.32 8.09 -2.38 -0.02 3.31 16 42 H 0.03 1.81 8.13 -2.39 -0.02 1.79 16 43 H 0.26 13.63 8.31 -92.70 -0.77 12.86 16 44 H 0.08 3.21 8.09 -2.39 -0.02 3.19 16 45 H 0.07 2.71 7.70 -2.39 -0.02 2.69 16 Total: -1.00 -59.41 357.62 4.91 -54.51 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: 0.92 Total: 18.39 kcal Atomic # 6 Polarization: -14.72 SS G_CDS: 4.74 Total: -9.97 kcal Atomic # 7 Polarization: -76.24 SS G_CDS: -2.73 Total: -78.97 kcal Atomic # 8 Polarization: -26.72 SS G_CDS: -0.05 Total: -26.77 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.82 kcal Total: -59.41 4.91 -54.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855474000.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.967 kcal (2) G-P(sol) polarization free energy of solvation -59.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds