Wall clock time and date at job start Mon Mar 30 2020 07:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 110.40450 * 2 1 4 4 C 1.54114 * 110.35828 * 237.72537 * 2 1 3 5 5 N 1.48278 * 107.06174 * 240.73267 * 4 2 1 6 6 C 1.46897 * 111.00541 * 215.18408 * 5 4 2 7 7 C 1.52998 * 109.47271 * 306.43260 * 6 5 4 8 8 O 1.42905 * 109.47342 * 64.99238 * 7 6 5 9 9 C 1.42895 * 113.99847 * 180.02562 * 8 7 6 10 10 C 1.50705 * 109.47280 * 180.02562 * 9 8 7 11 11 H 1.08003 * 119.99287 * 359.97438 * 10 9 8 12 12 C 1.37870 * 120.00388 * 179.97438 * 10 9 8 13 13 N 1.31515 * 120.00074 * 179.97438 * 12 10 9 14 14 Si 1.86805 * 119.99899 * 359.97438 * 12 10 9 15 15 H 1.48504 * 109.46939 * 90.00527 * 14 12 10 16 16 H 1.48502 * 109.46994 * 210.00137 * 14 12 10 17 17 H 1.48494 * 109.47158 * 330.00302 * 14 12 10 18 18 C 1.47594 * 105.03941 * 335.22872 * 5 4 2 19 19 H 1.09004 * 109.02478 * 284.37930 * 18 5 4 20 20 C 1.51037 * 112.86433 * 163.80756 * 18 5 4 21 21 C 1.53219 * 111.51932 * 294.90137 * 20 18 5 22 22 C 1.53277 * 108.11469 * 301.02718 * 21 20 18 23 23 C 1.52644 * 108.73987 * 63.38341 * 22 21 20 24 24 C 1.53034 * 110.81390 * 297.80323 * 23 22 21 25 25 H 1.08994 * 112.08950 * 288.09576 * 24 23 22 26 26 H 1.09007 * 109.47190 * 297.73252 * 1 2 3 27 27 H 1.08996 * 109.47119 * 57.73122 * 1 2 3 28 28 H 1.09003 * 109.47208 * 177.72971 * 1 2 3 29 29 H 1.09002 * 109.92169 * 121.37834 * 4 2 1 30 30 H 1.09001 * 110.08631 * 0.17616 * 4 2 1 31 31 H 1.09005 * 109.46982 * 66.42422 * 6 5 4 32 32 H 1.08996 * 109.47641 * 186.42901 * 6 5 4 33 33 H 1.08998 * 109.47710 * 184.99727 * 7 6 5 34 34 H 1.09004 * 109.46731 * 304.99808 * 7 6 5 35 35 H 1.09007 * 109.47230 * 300.00160 * 9 8 7 36 36 H 1.09002 * 109.47565 * 59.99825 * 9 8 7 37 37 H 0.97003 * 119.99764 * 179.97438 * 13 12 10 38 38 H 1.09002 * 109.09055 * 55.40684 * 20 18 5 39 39 H 1.08999 * 109.08702 * 174.41460 * 20 18 5 40 40 H 1.08998 * 109.95019 * 181.28770 * 21 20 18 41 41 H 1.09002 * 109.62986 * 60.57268 * 21 20 18 42 42 H 1.09002 * 109.61699 * 303.56182 * 22 21 20 43 43 H 1.08998 * 109.61588 * 183.20321 * 22 21 20 44 44 H 1.09007 * 109.20765 * 58.14114 * 23 22 21 45 45 H 1.08993 * 109.20860 * 177.45847 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9100 1.0216 0.0000 4 6 2.0662 -0.7715 -1.2216 5 7 2.8672 -1.9061 -0.7024 6 6 4.0200 -2.1781 -1.5713 7 6 3.5393 -2.3702 -3.0111 8 8 2.9818 -1.1464 -3.4945 9 6 2.4996 -1.2180 -4.8377 10 6 1.9373 0.1206 -5.2416 11 1 1.9468 0.9435 -4.5422 12 6 1.4107 0.2946 -6.5039 13 7 0.9195 1.4626 -6.8562 14 14 1.3949 -1.1286 -7.7137 15 1 0.1307 -1.8930 -7.5622 16 1 1.4918 -0.6019 -9.0988 17 1 2.5493 -2.0222 -7.4420 18 6 3.3062 -1.4817 0.6414 19 1 4.1133 -0.7562 0.5389 20 6 3.8012 -2.6309 1.4872 21 6 2.6766 -3.6233 1.8005 22 6 1.5670 -2.8681 2.5406 23 6 0.9965 -1.8001 1.6112 24 6 2.0710 -0.7783 1.2327 25 1 2.3280 -0.1258 2.0670 26 1 -0.3634 0.4782 0.9097 27 1 -0.3633 0.5486 -0.8689 28 1 -0.3634 -1.0269 -0.0407 29 1 2.6956 -0.1186 -1.8263 30 1 1.2366 -1.1464 -1.8212 31 1 4.7132 -1.3379 -1.5288 32 1 4.5246 -3.0830 -1.2330 33 1 4.3815 -2.6592 -3.6398 34 1 2.7798 -3.1516 -3.0393 35 1 3.3200 -1.4833 -5.5046 36 1 1.7185 -1.9755 -4.9035 37 1 0.5494 1.5852 -7.7444 38 1 4.5957 -3.1510 0.9522 39 1 4.2001 -2.2389 2.4228 40 1 3.0558 -4.4286 2.4297 41 1 2.2833 -4.0363 0.8716 42 1 1.9782 -2.3953 3.4325 43 1 0.7782 -3.5641 2.8261 44 1 0.6200 -2.2766 0.7059 45 1 0.1760 -1.2883 2.1140 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339081505.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:44 Heat of formation + Delta-G solvation = -56.349658 kcal Electronic energy + Delta-G solvation = -21945.597249 eV Core-core repulsion = 18962.283159 eV Total energy + Delta-G solvation = -2983.314090 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.34281 -37.17647 -35.08953 -34.07090 -32.60287 -30.41072 -28.86994 -28.33976 -27.42154 -25.19802 -22.74944 -22.00302 -21.79847 -21.50386 -19.13245 -18.75544 -16.84887 -16.18397 -15.78856 -15.44823 -14.86038 -14.41303 -14.37380 -14.13877 -13.84615 -13.17654 -13.10210 -12.85134 -12.53456 -12.45561 -12.38205 -12.14844 -11.84140 -11.48910 -11.43748 -11.29205 -11.01757 -10.89211 -10.73675 -10.63569 -10.53482 -10.21386 -10.04511 -9.86699 -9.80092 -9.73590 -9.15047 -8.82063 -8.45215 -8.00394 -6.12178 -4.10991 3.24534 3.31639 3.33236 4.21780 4.35294 4.61039 4.65501 4.73181 4.90393 5.14144 5.19818 5.21823 5.27187 5.38120 5.48955 5.52368 5.59707 5.61398 5.69723 5.74392 5.78462 5.83791 5.90097 5.93356 5.96024 6.10781 6.12098 6.16452 6.22797 6.25772 6.32297 6.34954 6.45578 6.49243 6.56468 6.64690 6.74037 6.86781 7.01047 7.29722 7.44727 7.60759 8.00642 8.65572 8.98447 9.47682 11.00778 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.027639 B = 0.004876 C = 0.004467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.827217 B = 5740.597606 C = 6266.375215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.106 4.106 3 H 0.067 0.933 4 C 0.050 3.950 5 N -0.505 5.505 6 C 0.052 3.948 7 C 0.057 3.943 8 O -0.376 6.376 9 C 0.167 3.833 10 C -0.516 4.516 11 H 0.081 0.919 12 C 0.073 3.927 13 N -0.896 5.896 14 Si 0.875 3.125 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.267 1.267 18 C 0.071 3.929 19 H 0.037 0.963 20 C -0.101 4.101 21 C -0.111 4.111 22 C -0.119 4.119 23 C -0.105 4.105 24 C -0.080 4.080 25 H 0.077 0.923 26 H 0.047 0.953 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.039 0.961 32 H 0.079 0.921 33 H 0.041 0.959 34 H 0.047 0.953 35 H 0.000 1.000 36 H -0.002 1.002 37 H 0.266 0.734 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.052 0.948 41 H 0.073 0.927 42 H 0.053 0.947 43 H 0.055 0.945 44 H 0.077 0.923 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.361 -8.730 17.675 19.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.125 4.125 3 H 0.086 0.914 4 C -0.077 4.077 5 N -0.230 5.230 6 C -0.077 4.077 7 C -0.020 4.020 8 O -0.295 6.295 9 C 0.092 3.908 10 C -0.554 4.554 11 H 0.099 0.901 12 C -0.129 4.129 13 N -0.534 5.534 14 Si 0.702 3.298 15 H -0.199 1.199 16 H -0.209 1.209 17 H -0.192 1.192 18 C -0.038 4.038 19 H 0.055 0.945 20 C -0.139 4.139 21 C -0.148 4.148 22 C -0.156 4.156 23 C -0.143 4.143 24 C -0.099 4.099 25 H 0.095 0.905 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.057 0.943 32 H 0.097 0.903 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.018 0.982 36 H 0.016 0.984 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.092 0.908 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.095 0.905 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.961 -8.941 17.614 19.974 hybrid contribution 0.563 -0.120 -1.087 1.230 sum 3.524 -9.062 16.527 19.175 Atomic orbital electron populations 1.21927 0.94764 1.02175 1.01151 1.22346 0.96362 0.98929 0.94874 0.91424 1.23134 0.98551 0.91236 0.94747 1.64678 1.18547 1.38762 1.00997 1.22305 0.92582 1.00614 0.92171 1.22330 0.97066 0.89374 0.93277 1.88008 1.79379 1.30952 1.31181 1.20588 0.92694 0.98170 0.79392 1.20866 1.38977 0.95907 0.99631 0.90063 1.24757 0.94757 0.95735 0.97651 1.69876 1.40341 1.22787 1.20435 0.86867 0.79087 0.82974 0.80912 1.19940 1.20853 1.19170 1.21885 0.95989 0.95307 0.90611 0.94474 1.21036 0.97983 0.96228 0.98615 1.21512 0.95824 0.96944 1.00565 1.21532 0.98097 0.97870 0.98109 1.21567 0.97034 0.95926 0.99731 1.22057 0.94733 0.96365 0.96773 0.90492 0.93360 0.92430 0.91850 0.90639 0.89880 0.94299 0.90320 0.94115 0.93495 0.98223 0.98434 0.92409 0.92413 0.92324 0.92957 0.90804 0.92780 0.92588 0.90462 0.92686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 7.83 37.16 0.29 -1.62 16 2 C -0.11 -1.51 3.40 -88.71 -0.30 -1.81 16 3 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 4 C 0.05 0.86 4.47 -2.48 -0.01 0.85 16 5 N -0.50 -7.51 4.73 -224.78 -1.06 -8.57 16 6 C 0.05 0.77 5.35 -3.83 -0.02 0.75 16 7 C 0.06 1.01 6.06 37.16 0.23 1.23 16 8 O -0.38 -8.38 6.60 -35.23 -0.23 -8.61 16 9 C 0.17 4.18 4.76 36.01 0.17 4.35 16 10 C -0.52 -15.09 9.99 -34.44 -0.34 -15.43 16 11 H 0.08 2.59 8.06 -52.48 -0.42 2.17 16 12 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 13 N -0.90 -27.51 13.96 55.43 0.77 -26.73 16 14 Si 0.87 21.44 27.47 -169.99 -4.67 16.78 16 15 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 16 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 18 C 0.07 0.90 2.04 -67.82 -0.14 0.76 16 19 H 0.04 0.50 7.81 -51.93 -0.41 0.10 16 20 C -0.10 -1.08 5.47 -27.61 -0.15 -1.23 16 21 C -0.11 -1.15 5.95 -26.47 -0.16 -1.31 16 22 C -0.12 -1.18 5.91 -26.77 -0.16 -1.34 16 23 C -0.11 -1.19 3.66 -26.90 -0.10 -1.29 16 24 C -0.08 -0.98 3.49 -88.78 -0.31 -1.29 16 25 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.05 0.56 7.87 -51.93 -0.41 0.15 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.06 0.84 6.00 -51.93 -0.31 0.52 16 29 H 0.08 1.52 5.99 -51.93 -0.31 1.21 16 30 H 0.08 1.61 7.44 -51.93 -0.39 1.23 16 31 H 0.04 0.60 7.86 -51.93 -0.41 0.19 16 32 H 0.08 0.99 7.45 -51.93 -0.39 0.61 16 33 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.00 0.00 7.20 -51.92 -0.37 -0.37 16 36 H 0.00 -0.05 7.57 -51.93 -0.39 -0.44 16 37 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 38 H 0.06 0.61 7.31 -51.93 -0.38 0.23 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.88 8.05 -51.93 -0.42 0.46 16 42 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.08 1.01 6.31 -51.92 -0.33 0.68 16 45 H 0.05 0.58 7.37 -51.93 -0.38 0.20 16 LS Contribution 331.21 15.07 4.99 4.99 Total: -1.00 -29.79 331.21 -9.59 -39.38 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -8.29 Total: -1.88 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: -1.10 Total: -15.35 kcal Atomic # 7 Polarization: -35.01 SS G_CDS: -0.29 Total: -35.30 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: -0.23 Total: -8.61 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.67 Total: 16.78 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.79 -9.59 -39.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339081505.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.969 kcal (2) G-P(sol) polarization free energy of solvation -29.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds