Wall clock time and date at job start Mon Mar 30 2020 07:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 110.40450 * 2 1 4 4 C 1.54114 * 110.35828 * 237.72537 * 2 1 3 5 5 N 1.48278 * 107.06174 * 240.73267 * 4 2 1 6 6 C 1.46897 * 111.00541 * 215.18408 * 5 4 2 7 7 C 1.52998 * 109.47271 * 306.43260 * 6 5 4 8 8 O 1.42905 * 109.47342 * 64.99238 * 7 6 5 9 9 C 1.42895 * 113.99847 * 180.02562 * 8 7 6 10 10 C 1.50705 * 109.47280 * 180.02562 * 9 8 7 11 11 H 1.08003 * 119.99287 * 359.97438 * 10 9 8 12 12 C 1.37870 * 120.00388 * 179.97438 * 10 9 8 13 13 N 1.31515 * 120.00074 * 179.97438 * 12 10 9 14 14 Si 1.86805 * 119.99899 * 359.97438 * 12 10 9 15 15 H 1.48504 * 109.46939 * 90.00527 * 14 12 10 16 16 H 1.48502 * 109.46994 * 210.00137 * 14 12 10 17 17 H 1.48494 * 109.47158 * 330.00302 * 14 12 10 18 18 C 1.47594 * 105.03941 * 335.22872 * 5 4 2 19 19 H 1.09004 * 109.02478 * 284.37930 * 18 5 4 20 20 C 1.51037 * 112.86433 * 163.80756 * 18 5 4 21 21 C 1.53219 * 111.51932 * 294.90137 * 20 18 5 22 22 C 1.53277 * 108.11469 * 301.02718 * 21 20 18 23 23 C 1.52644 * 108.73987 * 63.38341 * 22 21 20 24 24 C 1.53034 * 110.81390 * 297.80323 * 23 22 21 25 25 H 1.08994 * 112.08950 * 288.09576 * 24 23 22 26 26 H 1.09007 * 109.47190 * 297.73252 * 1 2 3 27 27 H 1.08996 * 109.47119 * 57.73122 * 1 2 3 28 28 H 1.09003 * 109.47208 * 177.72971 * 1 2 3 29 29 H 1.09002 * 109.92169 * 121.37834 * 4 2 1 30 30 H 1.09001 * 110.08631 * 0.17616 * 4 2 1 31 31 H 1.09005 * 109.46982 * 66.42422 * 6 5 4 32 32 H 1.08996 * 109.47641 * 186.42901 * 6 5 4 33 33 H 1.08998 * 109.47710 * 184.99727 * 7 6 5 34 34 H 1.09004 * 109.46731 * 304.99808 * 7 6 5 35 35 H 1.09007 * 109.47230 * 300.00160 * 9 8 7 36 36 H 1.09002 * 109.47565 * 59.99825 * 9 8 7 37 37 H 0.97003 * 119.99764 * 179.97438 * 13 12 10 38 38 H 1.09002 * 109.09055 * 55.40684 * 20 18 5 39 39 H 1.08999 * 109.08702 * 174.41460 * 20 18 5 40 40 H 1.08998 * 109.95019 * 181.28770 * 21 20 18 41 41 H 1.09002 * 109.62986 * 60.57268 * 21 20 18 42 42 H 1.09002 * 109.61699 * 303.56182 * 22 21 20 43 43 H 1.08998 * 109.61588 * 183.20321 * 22 21 20 44 44 H 1.09007 * 109.20765 * 58.14114 * 23 22 21 45 45 H 1.08993 * 109.20860 * 177.45847 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9100 1.0216 0.0000 4 6 2.0662 -0.7715 -1.2216 5 7 2.8672 -1.9061 -0.7024 6 6 4.0200 -2.1781 -1.5713 7 6 3.5393 -2.3702 -3.0111 8 8 2.9818 -1.1464 -3.4945 9 6 2.4996 -1.2180 -4.8377 10 6 1.9373 0.1206 -5.2416 11 1 1.9468 0.9435 -4.5422 12 6 1.4107 0.2946 -6.5039 13 7 0.9195 1.4626 -6.8562 14 14 1.3949 -1.1286 -7.7137 15 1 0.1307 -1.8930 -7.5622 16 1 1.4918 -0.6019 -9.0988 17 1 2.5493 -2.0222 -7.4420 18 6 3.3062 -1.4817 0.6414 19 1 4.1133 -0.7562 0.5389 20 6 3.8012 -2.6309 1.4872 21 6 2.6766 -3.6233 1.8005 22 6 1.5670 -2.8681 2.5406 23 6 0.9965 -1.8001 1.6112 24 6 2.0710 -0.7783 1.2327 25 1 2.3280 -0.1258 2.0670 26 1 -0.3634 0.4782 0.9097 27 1 -0.3633 0.5486 -0.8689 28 1 -0.3634 -1.0269 -0.0407 29 1 2.6956 -0.1186 -1.8263 30 1 1.2366 -1.1464 -1.8212 31 1 4.7132 -1.3379 -1.5288 32 1 4.5246 -3.0830 -1.2330 33 1 4.3815 -2.6592 -3.6398 34 1 2.7798 -3.1516 -3.0393 35 1 3.3200 -1.4833 -5.5046 36 1 1.7185 -1.9755 -4.9035 37 1 0.5494 1.5852 -7.7444 38 1 4.5957 -3.1510 0.9522 39 1 4.2001 -2.2389 2.4228 40 1 3.0558 -4.4286 2.4297 41 1 2.2833 -4.0363 0.8716 42 1 1.9782 -2.3953 3.4325 43 1 0.7782 -3.5641 2.8261 44 1 0.6200 -2.2766 0.7059 45 1 0.1760 -1.2883 2.1140 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339081505.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:43 Heat of formation + Delta-G solvation = -74.710746 kcal Electronic energy + Delta-G solvation = -21946.393446 eV Core-core repulsion = 18962.283159 eV Total energy + Delta-G solvation = -2984.110286 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.44718 -38.79196 -36.21977 -35.28882 -34.73564 -31.66818 -30.06505 -29.79366 -28.96408 -26.47630 -24.09988 -23.62967 -23.06769 -22.61571 -20.33787 -19.75044 -19.01384 -17.65737 -17.16154 -16.79413 -16.32265 -16.11827 -15.46781 -15.37341 -15.01170 -14.76007 -14.43599 -14.21723 -14.12611 -13.68531 -13.54875 -13.33591 -13.11702 -12.89311 -12.82728 -12.56988 -12.44500 -12.30901 -11.90243 -11.88649 -11.83884 -11.74858 -11.51259 -11.20184 -11.10304 -10.92356 -10.76596 -10.69518 -10.29807 -9.26563 -8.38365 -6.45473 1.31154 1.33573 1.44351 2.27455 2.94498 3.02922 3.07311 3.60608 3.65746 3.89949 4.11908 4.18544 4.25608 4.31328 4.37685 4.47017 4.49090 4.54481 4.57435 4.62013 4.70740 4.72424 4.74341 4.79661 4.84660 4.89010 4.99495 5.03253 5.07613 5.10575 5.14784 5.19324 5.33450 5.39193 5.43513 5.45444 5.48503 5.55201 5.55908 5.73672 5.92491 6.05248 6.23727 6.57961 6.72963 7.18966 8.78637 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.027639 B = 0.004876 C = 0.004467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.827217 B = 5740.597606 C = 6266.375215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 H 0.059 0.941 4 C 0.060 3.940 5 N -0.504 5.504 6 C 0.057 3.943 7 C 0.049 3.951 8 O -0.393 6.393 9 C 0.178 3.822 10 C -0.538 4.538 11 H 0.030 0.970 12 C 0.015 3.985 13 N -0.942 5.942 14 Si 0.952 3.048 15 H -0.261 1.261 16 H -0.273 1.273 17 H -0.248 1.248 18 C 0.069 3.931 19 H 0.029 0.971 20 C -0.097 4.097 21 C -0.109 4.109 22 C -0.115 4.115 23 C -0.102 4.102 24 C -0.072 4.072 25 H 0.096 0.904 26 H 0.071 0.929 27 H 0.033 0.967 28 H 0.065 0.935 29 H 0.036 0.964 30 H 0.050 0.950 31 H 0.031 0.969 32 H 0.112 0.888 33 H 0.057 0.943 34 H 0.050 0.950 35 H 0.008 0.992 36 H 0.005 0.995 37 H 0.272 0.728 38 H 0.061 0.939 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.054 0.946 42 H 0.068 0.932 43 H 0.064 0.936 44 H 0.055 0.945 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.091 -11.320 19.118 22.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.128 4.128 3 H 0.078 0.922 4 C -0.068 4.068 5 N -0.228 5.228 6 C -0.071 4.071 7 C -0.028 4.028 8 O -0.313 6.313 9 C 0.102 3.898 10 C -0.575 4.575 11 H 0.048 0.952 12 C -0.183 4.183 13 N -0.582 5.582 14 Si 0.774 3.226 15 H -0.186 1.186 16 H -0.198 1.198 17 H -0.171 1.171 18 C -0.039 4.039 19 H 0.047 0.953 20 C -0.135 4.135 21 C -0.146 4.146 22 C -0.152 4.152 23 C -0.139 4.139 24 C -0.091 4.091 25 H 0.114 0.886 26 H 0.090 0.910 27 H 0.052 0.948 28 H 0.083 0.917 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.049 0.951 32 H 0.130 0.870 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.025 0.975 36 H 0.023 0.977 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.096 0.904 40 H 0.088 0.912 41 H 0.073 0.927 42 H 0.087 0.913 43 H 0.083 0.917 44 H 0.073 0.927 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.707 -11.539 19.085 22.608 hybrid contribution 0.350 0.771 -1.462 1.690 sum 4.056 -10.767 17.622 21.046 Atomic orbital electron populations 1.21869 0.94131 1.02178 1.01210 1.22344 0.96938 0.98453 0.95024 0.92213 1.22836 0.97209 0.91447 0.95300 1.64689 1.18620 1.37482 1.02043 1.22345 0.92346 1.01776 0.90680 1.22631 0.97481 0.87583 0.95056 1.88038 1.79773 1.33731 1.29720 1.20277 0.92858 0.95613 0.81013 1.21100 1.40256 0.96725 0.99460 0.95157 1.25784 0.93706 0.99089 0.99730 1.70030 1.41185 1.25499 1.21438 0.85653 0.80202 0.78977 0.77788 1.18574 1.19811 1.17134 1.22018 0.95986 0.96326 0.89590 0.95293 1.21038 0.98155 0.95387 0.98919 1.21494 0.95748 0.97304 1.00090 1.21517 0.98235 0.97463 0.98016 1.21512 0.97013 0.96101 0.99312 1.22086 0.94611 0.96390 0.95973 0.88560 0.90965 0.94826 0.91653 0.94575 0.93129 0.95119 0.87009 0.92480 0.93172 0.97464 0.97709 0.91870 0.92030 0.90443 0.91151 0.92714 0.91327 0.91716 0.92662 0.91645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.76 7.83 71.98 0.56 -3.20 16 2 C -0.11 -3.18 3.40 -9.56 -0.03 -3.21 16 3 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 4 C 0.06 2.16 4.47 86.41 0.39 2.55 16 5 N -0.50 -14.90 4.73 -865.08 -4.09 -18.98 16 6 C 0.06 1.64 5.35 86.30 0.46 2.11 16 7 C 0.05 1.72 6.06 71.98 0.44 2.15 16 8 O -0.39 -18.16 6.60 -148.98 -0.98 -19.14 16 9 C 0.18 9.06 4.76 71.24 0.34 9.40 16 10 C -0.54 -32.93 9.99 25.60 0.26 -32.67 16 11 H 0.03 2.09 8.06 -2.91 -0.02 2.06 16 12 C 0.01 0.89 5.47 84.65 0.46 1.35 16 13 N -0.94 -59.74 13.96 21.44 0.30 -59.44 16 14 Si 0.95 44.07 27.47 68.60 1.88 45.96 16 15 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 16 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 17 H -0.25 -10.64 6.54 99.48 0.65 -9.99 16 18 C 0.07 1.66 2.04 44.46 0.09 1.75 16 19 H 0.03 0.75 7.81 -2.38 -0.02 0.73 16 20 C -0.10 -1.79 5.47 30.03 0.16 -1.62 16 21 C -0.11 -1.92 5.95 30.76 0.18 -1.74 16 22 C -0.11 -1.92 5.91 30.57 0.18 -1.74 16 23 C -0.10 -2.11 3.66 30.49 0.11 -2.00 16 24 C -0.07 -1.64 3.49 -9.60 -0.03 -1.67 16 25 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.07 1.62 7.87 -2.38 -0.02 1.60 16 27 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.06 1.76 6.00 -2.39 -0.01 1.75 16 29 H 0.04 1.58 5.99 -2.39 -0.01 1.56 16 30 H 0.05 2.12 7.44 -2.39 -0.02 2.10 16 31 H 0.03 0.94 7.86 -2.38 -0.02 0.93 16 32 H 0.11 2.53 7.45 -2.39 -0.02 2.51 16 33 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 35 H 0.01 0.38 7.20 -2.38 -0.02 0.36 16 36 H 0.01 0.25 7.57 -2.39 -0.02 0.24 16 37 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 38 H 0.06 1.10 7.31 -2.39 -0.02 1.08 16 39 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.05 1.19 8.05 -2.39 -0.02 1.17 16 42 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.05 1.40 6.31 -2.38 -0.02 1.39 16 45 H 0.06 1.22 7.37 -2.39 -0.02 1.20 16 Total: -1.00 -67.90 331.21 1.55 -66.35 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: 0.87 Total: 13.81 kcal Atomic # 6 Polarization: -32.12 SS G_CDS: 3.57 Total: -28.55 kcal Atomic # 7 Polarization: -74.63 SS G_CDS: -3.79 Total: -78.42 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: -0.98 Total: -19.14 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 1.88 Total: 45.96 kcal Total: -67.90 1.55 -66.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339081505.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.358 kcal (2) G-P(sol) polarization free energy of solvation -67.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds