Wall clock time and date at job start Mon Mar 30 2020 07:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09005 * 109.46669 * 2 1 4 4 C 1.50695 * 109.47138 * 240.00114 * 2 1 3 5 5 H 1.07999 * 119.99633 * 245.58494 * 4 2 1 6 6 C 1.37873 * 120.00512 * 65.58819 * 4 2 1 7 7 N 1.31511 * 120.00128 * 197.11433 * 6 4 2 8 8 Si 1.86803 * 119.99879 * 17.38142 * 6 4 2 9 9 H 1.48495 * 109.47419 * 179.72666 * 8 6 4 10 10 H 1.48496 * 109.47175 * 299.73095 * 8 6 4 11 11 H 1.48503 * 109.47008 * 59.72651 * 8 6 4 12 12 C 1.50701 * 109.47041 * 119.99582 * 2 1 3 13 13 O 1.21281 * 119.99822 * 119.99856 * 12 2 1 14 14 N 1.34772 * 119.99941 * 300.00651 * 12 2 1 15 15 C 1.46506 * 119.99780 * 179.97438 * 14 12 2 16 16 C 1.53004 * 109.47312 * 179.97438 * 15 14 12 17 17 C 1.53005 * 109.47058 * 300.00310 * 16 15 14 18 18 C 1.53005 * 109.46740 * 60.00054 * 16 15 14 19 19 C 1.52993 * 109.47294 * 179.97438 * 16 15 14 20 20 C 1.54888 * 110.75755 * 179.33381 * 19 16 15 21 21 C 1.54268 * 104.19598 * 203.74353 * 20 19 16 22 22 C 1.53869 * 106.59852 * 23.61334 * 21 20 19 23 23 C 1.54271 * 106.60151 * 359.97438 * 22 21 20 24 24 H 1.08999 * 109.46967 * 182.19831 * 1 2 3 25 25 H 1.08995 * 109.47445 * 302.20079 * 1 2 3 26 26 H 1.08999 * 109.46587 * 62.20140 * 1 2 3 27 27 H 0.96996 * 120.00256 * 355.09148 * 7 6 4 28 28 H 0.96995 * 120.00636 * 359.97438 * 14 12 2 29 29 H 1.08996 * 109.47004 * 299.99479 * 15 14 12 30 30 H 1.09002 * 109.47177 * 59.99721 * 15 14 12 31 31 H 1.08999 * 109.47296 * 67.66941 * 17 16 15 32 32 H 1.08993 * 109.46765 * 187.67203 * 17 16 15 33 33 H 1.09002 * 109.46925 * 307.67120 * 17 16 15 34 34 H 1.08994 * 109.47126 * 64.13691 * 18 16 15 35 35 H 1.08994 * 109.46684 * 184.14375 * 18 16 15 36 36 H 1.09003 * 109.46972 * 304.13947 * 18 16 15 37 37 H 1.09001 * 110.67106 * 302.77449 * 19 16 15 38 38 H 1.09002 * 110.48199 * 322.42514 * 20 19 16 39 39 H 1.09005 * 110.48374 * 85.06401 * 20 19 16 40 40 H 1.08997 * 110.03004 * 264.32557 * 21 20 19 41 41 H 1.09003 * 110.02935 * 142.89515 * 21 20 19 42 42 H 1.09004 * 110.03072 * 240.71731 * 22 21 20 43 43 H 1.08996 * 110.07776 * 119.30549 * 22 21 20 44 44 H 1.08999 * 110.48724 * 217.71595 * 23 22 21 45 45 H 1.08999 * 110.59444 * 95.12608 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5769 -1.6380 -1.1339 6 6 1.7970 -0.1760 -2.4794 7 7 1.9233 -0.9281 -3.5509 8 14 1.3059 1.6182 -2.6503 9 1 1.1187 1.9456 -4.0866 10 1 0.0356 1.8555 -1.9188 11 1 2.3732 2.4798 -2.0813 12 6 2.0324 -0.7103 1.2305 13 8 2.7296 -1.6964 1.1193 14 7 1.7067 -0.2499 2.4545 15 6 2.1946 -0.9408 3.6508 16 6 1.6851 -0.2191 4.9001 17 6 2.1960 1.2231 4.9000 18 6 0.1550 -0.2181 4.9000 19 6 2.1941 -0.9410 6.1493 20 6 1.7086 -0.2242 7.4336 21 6 2.7350 -0.6375 8.5086 22 6 4.0235 -1.0227 7.7609 23 6 3.7350 -0.8306 6.2577 24 1 -0.3633 -1.0269 0.0394 25 1 -0.3634 0.5476 0.8695 26 1 -0.3632 0.4793 -0.9091 27 1 2.2505 -1.8376 -3.4692 28 1 1.1493 0.5389 2.5436 29 1 1.8308 -1.9682 3.6506 30 1 3.2846 -0.9412 3.6510 31 1 1.7254 1.7753 4.0865 32 1 1.9494 1.6959 5.8505 33 1 3.2774 1.2254 4.7627 34 1 -0.2089 -1.2428 4.9742 35 1 -0.2079 0.3589 5.7505 36 1 -0.2080 0.2303 3.9752 37 1 1.8813 -1.9852 6.1445 38 1 1.7171 0.8568 7.2935 39 1 0.7105 -0.5664 7.7074 40 1 2.3611 -1.4918 9.0728 41 1 2.9289 0.1985 9.1806 42 1 4.2749 -2.0640 7.9624 43 1 4.8434 -0.3743 8.0699 44 1 4.2161 -1.6151 5.6736 45 1 4.0709 0.1517 5.9253 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597431825.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:48:49 Heat of formation + Delta-G solvation = -72.614669 kcal Electronic energy + Delta-G solvation = -21357.089787 eV Core-core repulsion = 18373.070394 eV Total energy + Delta-G solvation = -2984.019393 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.97427 -38.52810 -35.72097 -33.71916 -32.65456 -30.95157 -29.14279 -27.82840 -27.37642 -26.18788 -24.78145 -22.49868 -21.16296 -20.33353 -19.39763 -18.34797 -17.33110 -16.38229 -15.82462 -15.64137 -14.87465 -14.83718 -14.30309 -13.94243 -13.79088 -13.41426 -13.37885 -13.04141 -12.68171 -12.41413 -12.00725 -11.90347 -11.71435 -11.53087 -11.51093 -11.47582 -11.23067 -11.16679 -10.93529 -10.60119 -10.52174 -10.49008 -10.38822 -10.30877 -10.09199 -9.76978 -8.82468 -8.67343 -8.44124 -8.12699 -6.41207 -3.98465 3.35331 3.42439 3.58867 3.68786 3.88654 4.33398 4.42665 4.50939 4.51429 4.80489 4.87164 4.96368 5.26652 5.28445 5.31953 5.34805 5.40498 5.45560 5.54259 5.59241 5.68197 5.73528 5.74973 5.76125 5.85941 5.91979 5.95883 5.96515 6.08224 6.11771 6.15877 6.20259 6.23856 6.29612 6.40960 6.45981 6.57523 6.93959 7.07673 7.28242 7.87275 8.35559 8.52307 9.09191 9.21111 9.70645 11.00902 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.037693 B = 0.004024 C = 0.003886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.663189 B = 6955.916728 C = 7203.002233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.001 3.999 3 H 0.042 0.958 4 C -0.587 4.587 5 H 0.074 0.926 6 C 0.028 3.972 7 N -0.907 5.907 8 Si 1.045 2.955 9 H -0.285 1.285 10 H -0.274 1.274 11 H -0.284 1.284 12 C 0.525 3.475 13 O -0.539 6.539 14 N -0.745 5.745 15 C 0.131 3.869 16 C -0.067 4.067 17 C -0.147 4.147 18 C -0.142 4.142 19 C -0.078 4.078 20 C -0.121 4.121 21 C -0.125 4.125 22 C -0.125 4.125 23 C -0.128 4.128 24 H 0.048 0.952 25 H 0.025 0.975 26 H 0.063 0.937 27 H 0.269 0.731 28 H 0.393 0.607 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.059 0.941 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.066 0.934 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.046 5.184 23.812 24.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.020 4.020 3 H 0.060 0.940 4 C -0.626 4.626 5 H 0.092 0.908 6 C -0.177 4.177 7 N -0.541 5.541 8 Si 0.873 3.127 9 H -0.211 1.211 10 H -0.200 1.200 11 H -0.210 1.210 12 C 0.313 3.687 13 O -0.414 6.414 14 N -0.400 5.400 15 C 0.007 3.993 16 C -0.068 4.068 17 C -0.204 4.204 18 C -0.199 4.199 19 C -0.097 4.097 20 C -0.158 4.158 21 C -0.162 4.162 22 C -0.162 4.162 23 C -0.165 4.165 24 H 0.067 0.933 25 H 0.044 0.956 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.228 0.772 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.084 0.916 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.971 5.581 22.596 23.358 hybrid contribution 0.255 -0.885 1.227 1.534 sum -1.715 4.697 23.822 24.341 Atomic orbital electron populations 1.22185 0.97129 1.00887 1.00014 1.19185 0.93568 0.96799 0.92496 0.93985 1.21959 1.40074 1.10783 0.89754 0.90806 1.25759 0.94942 1.04907 0.92055 1.70824 1.41849 1.10144 1.31316 0.84065 0.76873 0.75534 0.76189 1.21066 1.20037 1.21028 1.21413 0.78787 0.84354 0.84101 1.90553 1.37518 1.26628 1.86674 1.46323 1.55468 1.32576 1.05661 1.21241 0.98810 0.95743 0.83509 1.20726 0.95957 0.95897 0.94194 1.22026 1.01518 0.95105 1.01715 1.21885 0.94183 1.02063 1.01800 1.22080 0.95181 0.99274 0.93147 1.22506 0.98315 1.00732 0.94280 1.22124 0.95530 1.00716 0.97860 1.22120 0.97484 1.01139 0.95475 1.22563 0.95647 1.02477 0.95807 0.93288 0.95634 0.91811 0.92107 0.77218 0.92379 0.92083 0.92525 0.92100 0.92079 0.92534 0.92467 0.92347 0.90507 0.90972 0.91861 0.92161 0.92174 0.92111 0.92127 0.91565 0.90849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.76 37.16 0.33 -2.71 16 2 C 0.00 0.03 2.22 -92.92 -0.21 -0.17 16 3 H 0.04 0.97 6.80 -51.93 -0.35 0.61 16 4 C -0.59 -17.32 8.63 -34.44 -0.30 -17.61 16 5 H 0.07 2.47 7.02 -52.49 -0.37 2.10 16 6 C 0.03 0.82 5.32 -17.82 -0.09 0.72 16 7 N -0.91 -28.53 13.70 55.43 0.76 -27.77 16 8 Si 1.04 24.78 26.33 -169.99 -4.48 20.30 16 9 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 10 H -0.27 -5.80 5.65 56.52 0.32 -5.48 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 C 0.52 11.94 7.15 -10.99 -0.08 11.86 16 13 O -0.54 -14.55 15.47 5.56 0.09 -14.46 16 14 N -0.74 -12.51 4.87 -60.29 -0.29 -12.81 16 15 C 0.13 1.90 4.40 -4.04 -0.02 1.89 16 16 C -0.07 -0.70 0.35 -154.50 -0.05 -0.76 16 17 C -0.15 -1.42 7.46 37.16 0.28 -1.14 16 18 C -0.14 -1.39 8.06 37.16 0.30 -1.09 16 19 C -0.08 -0.73 2.25 -88.64 -0.20 -0.93 16 20 C -0.12 -0.95 5.15 -25.07 -0.13 -1.08 16 21 C -0.12 -0.94 6.80 -25.62 -0.17 -1.11 16 22 C -0.12 -1.02 6.80 -25.61 -0.17 -1.19 16 23 C -0.13 -1.20 5.32 -25.08 -0.13 -1.34 16 24 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 25 H 0.02 0.42 7.63 -51.93 -0.40 0.03 16 26 H 0.06 1.39 4.80 -51.93 -0.25 1.14 16 27 H 0.27 8.54 8.73 -40.82 -0.36 8.19 16 28 H 0.39 5.59 5.68 -40.82 -0.23 5.36 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.06 0.95 7.39 -51.93 -0.38 0.57 16 31 H 0.06 0.56 7.09 -51.93 -0.37 0.19 16 32 H 0.06 0.50 5.84 -51.93 -0.30 0.20 16 33 H 0.06 0.63 6.44 -51.93 -0.33 0.29 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.48 7.42 -51.93 -0.39 0.09 16 36 H 0.06 0.60 6.75 -51.93 -0.35 0.25 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.56 5.74 -51.93 -0.30 0.26 16 39 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.07 0.68 8.02 -51.93 -0.42 0.27 16 45 H 0.07 0.70 5.76 -51.93 -0.30 0.40 16 LS Contribution 333.22 15.07 5.02 5.02 Total: -1.00 -33.24 333.22 -7.33 -40.57 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -7.77 Total: 3.81 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: -0.66 Total: -14.67 kcal Atomic # 7 Polarization: -41.04 SS G_CDS: 0.47 Total: -40.57 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: 0.09 Total: -14.46 kcal Atomic # 14 Polarization: 24.78 SS G_CDS: -4.48 Total: 20.30 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.24 -7.33 -40.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597431825.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.041 kcal (2) G-P(sol) polarization free energy of solvation -33.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds