Wall clock time and date at job start Mon Mar 30 2020 07:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09005 * 109.46669 * 2 1 4 4 C 1.50695 * 109.47138 * 240.00114 * 2 1 3 5 5 H 1.07999 * 119.99633 * 245.58494 * 4 2 1 6 6 C 1.37873 * 120.00512 * 65.58819 * 4 2 1 7 7 N 1.31511 * 120.00128 * 197.11433 * 6 4 2 8 8 Si 1.86803 * 119.99879 * 17.38142 * 6 4 2 9 9 H 1.48495 * 109.47419 * 179.72666 * 8 6 4 10 10 H 1.48496 * 109.47175 * 299.73095 * 8 6 4 11 11 H 1.48503 * 109.47008 * 59.72651 * 8 6 4 12 12 C 1.50701 * 109.47041 * 119.99582 * 2 1 3 13 13 O 1.21281 * 119.99822 * 119.99856 * 12 2 1 14 14 N 1.34772 * 119.99941 * 300.00651 * 12 2 1 15 15 C 1.46506 * 119.99780 * 179.97438 * 14 12 2 16 16 C 1.53004 * 109.47312 * 179.97438 * 15 14 12 17 17 C 1.53005 * 109.47058 * 300.00310 * 16 15 14 18 18 C 1.53005 * 109.46740 * 60.00054 * 16 15 14 19 19 C 1.52993 * 109.47294 * 179.97438 * 16 15 14 20 20 C 1.54888 * 110.75755 * 179.33381 * 19 16 15 21 21 C 1.54268 * 104.19598 * 203.74353 * 20 19 16 22 22 C 1.53869 * 106.59852 * 23.61334 * 21 20 19 23 23 C 1.54271 * 106.60151 * 359.97438 * 22 21 20 24 24 H 1.08999 * 109.46967 * 182.19831 * 1 2 3 25 25 H 1.08995 * 109.47445 * 302.20079 * 1 2 3 26 26 H 1.08999 * 109.46587 * 62.20140 * 1 2 3 27 27 H 0.96996 * 120.00256 * 355.09148 * 7 6 4 28 28 H 0.96995 * 120.00636 * 359.97438 * 14 12 2 29 29 H 1.08996 * 109.47004 * 299.99479 * 15 14 12 30 30 H 1.09002 * 109.47177 * 59.99721 * 15 14 12 31 31 H 1.08999 * 109.47296 * 67.66941 * 17 16 15 32 32 H 1.08993 * 109.46765 * 187.67203 * 17 16 15 33 33 H 1.09002 * 109.46925 * 307.67120 * 17 16 15 34 34 H 1.08994 * 109.47126 * 64.13691 * 18 16 15 35 35 H 1.08994 * 109.46684 * 184.14375 * 18 16 15 36 36 H 1.09003 * 109.46972 * 304.13947 * 18 16 15 37 37 H 1.09001 * 110.67106 * 302.77449 * 19 16 15 38 38 H 1.09002 * 110.48199 * 322.42514 * 20 19 16 39 39 H 1.09005 * 110.48374 * 85.06401 * 20 19 16 40 40 H 1.08997 * 110.03004 * 264.32557 * 21 20 19 41 41 H 1.09003 * 110.02935 * 142.89515 * 21 20 19 42 42 H 1.09004 * 110.03072 * 240.71731 * 22 21 20 43 43 H 1.08996 * 110.07776 * 119.30549 * 22 21 20 44 44 H 1.08999 * 110.48724 * 217.71595 * 23 22 21 45 45 H 1.08999 * 110.59444 * 95.12608 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5769 -1.6380 -1.1339 6 6 1.7970 -0.1760 -2.4794 7 7 1.9233 -0.9281 -3.5509 8 14 1.3059 1.6182 -2.6503 9 1 1.1187 1.9456 -4.0866 10 1 0.0356 1.8555 -1.9188 11 1 2.3732 2.4798 -2.0813 12 6 2.0324 -0.7103 1.2305 13 8 2.7296 -1.6964 1.1193 14 7 1.7067 -0.2499 2.4545 15 6 2.1946 -0.9408 3.6508 16 6 1.6851 -0.2191 4.9001 17 6 2.1960 1.2231 4.9000 18 6 0.1550 -0.2181 4.9000 19 6 2.1941 -0.9410 6.1493 20 6 1.7086 -0.2242 7.4336 21 6 2.7350 -0.6375 8.5086 22 6 4.0235 -1.0227 7.7609 23 6 3.7350 -0.8306 6.2577 24 1 -0.3633 -1.0269 0.0394 25 1 -0.3634 0.5476 0.8695 26 1 -0.3632 0.4793 -0.9091 27 1 2.2505 -1.8376 -3.4692 28 1 1.1493 0.5389 2.5436 29 1 1.8308 -1.9682 3.6506 30 1 3.2846 -0.9412 3.6510 31 1 1.7254 1.7753 4.0865 32 1 1.9494 1.6959 5.8505 33 1 3.2774 1.2254 4.7627 34 1 -0.2089 -1.2428 4.9742 35 1 -0.2079 0.3589 5.7505 36 1 -0.2080 0.2303 3.9752 37 1 1.8813 -1.9852 6.1445 38 1 1.7171 0.8568 7.2935 39 1 0.7105 -0.5664 7.7074 40 1 2.3611 -1.4918 9.0728 41 1 2.9289 0.1985 9.1806 42 1 4.2749 -2.0640 7.9624 43 1 4.8434 -0.3743 8.0699 44 1 4.2161 -1.6151 5.6736 45 1 4.0709 0.1517 5.9253 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597431825.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:48:48 Heat of formation + Delta-G solvation = -94.632744 kcal Electronic energy + Delta-G solvation = -21358.044563 eV Core-core repulsion = 18373.070394 eV Total energy + Delta-G solvation = -2984.974169 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.12326 -39.95937 -36.79201 -35.79576 -34.13050 -32.89394 -29.84689 -28.55495 -28.16204 -27.41358 -26.79502 -24.18512 -22.17942 -21.12654 -20.99236 -19.57069 -19.16619 -17.90309 -17.01450 -16.66855 -16.28900 -15.94830 -15.73245 -15.25739 -14.96551 -14.71859 -14.49531 -14.29865 -14.03022 -13.85329 -13.46212 -13.37550 -12.99701 -12.71704 -12.64201 -12.36700 -12.28299 -12.21070 -11.96075 -11.93070 -11.80782 -11.57291 -11.38343 -11.30034 -11.15883 -11.04301 -10.97828 -10.60662 -10.30620 -9.98479 -8.78175 -6.36734 1.48018 1.59433 1.76279 1.86790 2.40888 2.54347 3.09131 3.54661 3.69062 3.73907 3.99675 4.07364 4.19037 4.21269 4.45578 4.47440 4.55340 4.60187 4.68843 4.70166 4.72506 4.77339 4.83511 4.83893 4.90327 4.92260 4.99692 5.06783 5.13921 5.15427 5.17712 5.20125 5.21708 5.34533 5.42806 5.49178 5.53278 5.55290 5.59418 5.66855 5.86779 6.05171 6.60736 6.76009 7.41806 7.51497 8.62684 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.037693 B = 0.004024 C = 0.003886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.663189 B = 6955.916728 C = 7203.002233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.005 4.005 3 H 0.068 0.932 4 C -0.601 4.601 5 H 0.011 0.989 6 C -0.026 4.026 7 N -0.939 5.939 8 Si 1.089 2.911 9 H -0.292 1.292 10 H -0.222 1.222 11 H -0.261 1.261 12 C 0.521 3.479 13 O -0.596 6.596 14 N -0.716 5.716 15 C 0.130 3.870 16 C -0.056 4.056 17 C -0.147 4.147 18 C -0.142 4.142 19 C -0.078 4.078 20 C -0.115 4.115 21 C -0.123 4.123 22 C -0.124 4.124 23 C -0.131 4.131 24 H 0.030 0.970 25 H 0.079 0.921 26 H 0.062 0.938 27 H 0.246 0.754 28 H 0.411 0.589 29 H 0.041 0.959 30 H 0.047 0.953 31 H 0.059 0.941 32 H 0.083 0.917 33 H 0.052 0.948 34 H 0.049 0.951 35 H 0.080 0.920 36 H 0.056 0.944 37 H 0.067 0.933 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.071 0.929 42 H 0.057 0.943 43 H 0.066 0.934 44 H 0.046 0.954 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.041 8.682 26.650 28.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.027 4.027 3 H 0.086 0.914 4 C -0.639 4.639 5 H 0.029 0.971 6 C -0.222 4.222 7 N -0.575 5.575 8 Si 0.908 3.092 9 H -0.218 1.218 10 H -0.146 1.146 11 H -0.186 1.186 12 C 0.309 3.691 13 O -0.476 6.476 14 N -0.371 5.371 15 C 0.007 3.993 16 C -0.056 4.056 17 C -0.204 4.204 18 C -0.199 4.199 19 C -0.097 4.097 20 C -0.152 4.152 21 C -0.161 4.161 22 C -0.162 4.162 23 C -0.168 4.168 24 H 0.049 0.951 25 H 0.098 0.902 26 H 0.081 0.919 27 H 0.055 0.945 28 H 0.249 0.751 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.101 0.899 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.099 0.901 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.099 0.901 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.090 0.910 42 H 0.076 0.924 43 H 0.085 0.915 44 H 0.065 0.935 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.994 9.092 25.512 27.377 hybrid contribution 0.968 -2.099 0.396 2.345 sum -3.026 6.993 25.908 27.005 Atomic orbital electron populations 1.22059 0.94174 1.00799 1.02455 1.19182 0.95754 0.97123 0.90597 0.91447 1.22072 1.39698 1.09083 0.93067 0.97079 1.27591 0.94083 1.09289 0.91254 1.70990 1.44400 1.09422 1.32681 0.83600 0.79610 0.69247 0.76753 1.21802 1.14595 1.18558 1.21297 0.78379 0.83688 0.85696 1.90541 1.40253 1.29159 1.87604 1.45987 1.54124 1.32453 1.04496 1.21390 0.98086 0.95488 0.84374 1.20658 0.96694 0.96138 0.92127 1.22049 1.00997 0.94225 1.03122 1.21903 0.93066 1.02186 1.02758 1.22064 0.95018 0.98994 0.93614 1.22485 0.98744 1.00946 0.93002 1.22126 0.94792 1.01325 0.97831 1.22120 0.98346 1.01227 0.94486 1.22574 0.95806 1.01808 0.96662 0.95064 0.90200 0.91911 0.94537 0.75053 0.94058 0.93508 0.92229 0.89863 0.92918 0.93150 0.90102 0.92522 0.91420 0.90070 0.90988 0.91829 0.91031 0.92390 0.91528 0.93467 0.90791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.35 8.76 71.98 0.63 -4.72 16 2 C 0.00 -0.22 2.22 -12.28 -0.03 -0.25 16 3 H 0.07 2.86 6.80 -2.38 -0.02 2.84 16 4 C -0.60 -36.66 8.63 25.60 0.22 -36.44 16 5 H 0.01 0.78 7.02 -2.91 -0.02 0.76 16 6 C -0.03 -1.55 5.32 84.65 0.45 -1.10 16 7 N -0.94 -61.50 13.70 21.45 0.29 -61.21 16 8 Si 1.09 47.93 26.33 68.60 1.81 49.74 16 9 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 10 H -0.22 -7.99 5.65 99.48 0.56 -7.43 16 11 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 12 C 0.52 23.78 7.15 87.66 0.63 24.40 16 13 O -0.60 -33.81 15.47 -3.03 -0.05 -33.85 16 14 N -0.72 -22.93 4.87 -463.05 -2.25 -25.19 16 15 C 0.13 3.73 4.40 86.38 0.38 4.11 16 16 C -0.06 -1.04 0.35 -52.18 -0.02 -1.05 16 17 C -0.15 -2.36 7.46 71.98 0.54 -1.82 16 18 C -0.14 -2.30 8.06 71.98 0.58 -1.72 16 19 C -0.08 -1.32 2.25 -9.51 -0.02 -1.34 16 20 C -0.11 -1.42 5.15 31.67 0.16 -1.26 16 21 C -0.12 -1.51 6.80 31.32 0.21 -1.30 16 22 C -0.12 -1.84 6.80 31.32 0.21 -1.62 16 23 C -0.13 -2.37 5.32 31.66 0.17 -2.20 16 24 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.08 2.25 7.63 -2.39 -0.02 2.23 16 26 H 0.06 2.46 4.80 -2.39 -0.01 2.45 16 27 H 0.25 16.74 8.73 -92.71 -0.81 15.94 16 28 H 0.41 10.18 5.68 -92.71 -0.53 9.66 16 29 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.05 1.49 7.39 -2.39 -0.02 1.47 16 31 H 0.06 0.93 7.09 -2.39 -0.02 0.91 16 32 H 0.08 1.00 5.84 -2.39 -0.01 0.99 16 33 H 0.05 0.95 6.44 -2.39 -0.02 0.94 16 34 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.08 0.97 7.42 -2.39 -0.02 0.95 16 36 H 0.06 0.94 6.75 -2.39 -0.02 0.92 16 37 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.08 0.89 5.74 -2.39 -0.01 0.87 16 39 H 0.07 0.81 8.09 -2.38 -0.02 0.79 16 40 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 43 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.05 1.01 8.02 -2.39 -0.02 0.99 16 45 H 0.07 1.32 5.76 -2.39 -0.01 1.31 16 Total: -1.00 -78.73 333.22 4.17 -74.56 By element: Atomic # 1 Polarization: 22.01 SS G_CDS: 0.25 Total: 22.26 kcal Atomic # 6 Polarization: -30.43 SS G_CDS: 4.12 Total: -26.32 kcal Atomic # 7 Polarization: -84.44 SS G_CDS: -1.96 Total: -86.40 kcal Atomic # 8 Polarization: -33.81 SS G_CDS: -0.05 Total: -33.85 kcal Atomic # 14 Polarization: 47.93 SS G_CDS: 1.81 Total: 49.74 kcal Total: -78.73 4.17 -74.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597431825.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.069 kcal (2) G-P(sol) polarization free energy of solvation -78.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds