Wall clock time and date at job start Mon Mar 30 2020 08:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 120.00132 * 2 1 4 4 H 1.48500 * 109.46802 * 239.99699 * 3 2 1 5 5 H 1.48498 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47344 * 119.99497 * 3 2 1 7 7 C 1.37881 * 119.99826 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99752 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00103 * 0.02562 * 7 2 1 10 10 N 1.46905 * 109.47066 * 179.97438 * 9 7 2 11 11 C 1.46901 * 110.99870 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.47021 * 274.99736 * 11 10 9 13 13 C 1.53005 * 109.47186 * 113.26748 * 12 11 10 14 14 C 1.52995 * 109.47234 * 126.77193 * 13 12 11 15 15 C 1.52992 * 109.47247 * 233.28107 * 14 13 12 16 16 C 1.52997 * 109.47541 * 126.70416 * 15 14 13 17 17 C 1.52995 * 109.47483 * 233.25790 * 16 15 14 18 18 C 1.53003 * 109.47383 * 126.74219 * 17 16 15 19 19 C 1.52993 * 109.47399 * 233.27066 * 18 17 16 20 20 C 1.52998 * 109.47264 * 126.71654 * 19 18 17 21 21 C 1.53002 * 109.47334 * 233.27487 * 20 19 18 22 22 C 1.53000 * 109.47187 * 154.99992 * 11 10 9 23 23 H 0.96997 * 120.00392 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47558 * 59.99825 * 9 7 2 25 25 H 1.08998 * 109.47216 * 299.99488 * 9 7 2 26 26 H 1.00901 * 110.99869 * 56.04737 * 10 9 7 27 27 H 1.09000 * 109.47473 * 34.99539 * 11 10 9 28 28 H 1.08994 * 109.47361 * 233.27063 * 12 11 10 29 29 H 1.09000 * 109.47151 * 353.27468 * 12 11 10 30 30 H 1.09002 * 109.46798 * 6.77049 * 13 12 11 31 31 H 1.09001 * 109.47262 * 246.77557 * 13 12 11 32 32 H 1.08999 * 109.47160 * 113.27837 * 14 13 12 33 33 H 1.09005 * 109.47092 * 353.27703 * 14 13 12 34 34 H 1.09004 * 109.47572 * 6.69898 * 15 14 13 35 35 H 1.09011 * 109.47161 * 246.70258 * 15 14 13 36 36 H 1.09003 * 109.47438 * 113.25809 * 16 15 14 37 37 H 1.08996 * 109.47248 * 353.26080 * 16 15 14 38 38 H 1.09006 * 109.46681 * 6.74644 * 17 16 15 39 39 H 1.09001 * 109.47232 * 246.74819 * 17 16 15 40 40 H 1.08999 * 109.46981 * 113.26957 * 18 17 16 41 41 H 1.08998 * 109.47077 * 353.27436 * 18 17 16 42 42 H 1.09000 * 109.47146 * 6.71702 * 19 18 17 43 43 H 1.09002 * 109.47641 * 246.71847 * 19 18 17 44 44 H 1.08995 * 109.47396 * 113.27427 * 20 19 18 45 45 H 1.09003 * 109.47125 * 353.27310 * 20 19 18 46 46 H 1.08999 * 109.47262 * 6.76296 * 21 20 19 47 47 H 1.09000 * 109.47020 * 246.75770 * 21 20 19 48 48 H 1.09003 * 109.46629 * 6.69088 * 22 11 10 49 49 H 1.08994 * 109.47180 * 126.68889 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6962 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6158 0.0005 11 6 1.5053 -4.9071 -0.0001 12 6 1.1512 -5.2959 1.4367 13 6 -0.3688 -5.2762 1.6106 14 6 -0.8344 -6.6174 2.1809 15 6 -1.9335 -7.1971 1.2885 16 6 -1.5588 -8.6227 0.8785 17 6 -1.6243 -8.7493 -0.6448 18 6 -0.2986 -9.3060 -1.1678 19 6 0.2494 -8.3805 -2.2559 20 6 1.6864 -7.9837 -1.9118 21 6 1.8137 -6.4592 -1.9335 22 6 2.4115 -5.9785 -0.6097 23 1 -0.4850 0.8400 -0.0004 24 1 0.6246 -2.5572 -0.8896 25 1 0.6240 -2.5568 0.8903 26 1 2.8405 -3.5487 0.7819 27 1 0.5922 -4.8250 -0.5897 28 1 1.5278 -6.2972 1.6455 29 1 1.6051 -4.5855 2.1277 30 1 -0.8430 -5.1083 0.6436 31 1 -0.6459 -4.4745 2.2951 32 1 -1.2246 -6.4683 3.1877 33 1 0.0074 -7.3090 2.2162 34 1 -2.0415 -6.5792 0.3971 35 1 -2.8759 -7.2125 1.8362 36 1 -2.2568 -9.3266 1.3319 37 1 -0.5472 -8.8445 1.2184 38 1 -1.8045 -7.7678 -1.0834 39 1 -2.4352 -9.4241 -0.9188 40 1 -0.4611 -10.3001 -1.5843 41 1 0.4179 -9.3680 -0.3488 42 1 -0.3698 -7.4856 -2.3174 43 1 0.2353 -8.8987 -3.2148 44 1 2.3680 -8.4157 -2.6445 45 1 1.9379 -8.3552 -0.9183 46 1 0.8281 -6.0142 -2.0699 47 1 2.4642 -6.1606 -2.7556 48 1 3.4011 -5.5581 -0.7893 49 1 2.4936 -6.8196 0.0786 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020557587.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:48:10 Heat of formation + Delta-G solvation = -41.162821 kcal Electronic energy + Delta-G solvation = -21745.424268 eV Core-core repulsion = 18898.601824 eV Total energy + Delta-G solvation = -2846.822444 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -38.30211 -36.57413 -35.75648 -33.55420 -32.09485 -30.92069 -29.72655 -26.37634 -25.51195 -24.53542 -21.70804 -21.48936 -21.03348 -20.70547 -20.49785 -20.12289 -16.34231 -16.13106 -15.22408 -14.96128 -14.62751 -14.30510 -14.10992 -13.60381 -13.21168 -13.16306 -13.09107 -13.00329 -12.60346 -12.26400 -12.06225 -11.63716 -11.33357 -11.15913 -11.12162 -11.09979 -10.98832 -10.98345 -10.82915 -10.77350 -10.68401 -10.41221 -10.31685 -10.14735 -9.96786 -9.91986 -9.70964 -9.64260 -9.08844 -8.43188 -7.13573 -5.98773 -4.00280 3.35710 3.39434 3.42714 4.44603 4.47006 4.76979 4.80129 4.97951 5.03549 5.06600 5.10391 5.19226 5.27023 5.36993 5.50245 5.57963 5.62190 5.66696 5.71030 5.75604 5.80416 5.89231 5.90228 6.03086 6.07083 6.10906 6.13084 6.21498 6.23445 6.27433 6.30406 6.31236 6.36679 6.39216 6.41782 6.53970 6.58264 6.64338 6.68428 6.76580 6.82052 7.37188 7.53494 7.85047 8.21024 8.50002 8.72417 9.09627 9.64427 11.12147 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.021886 B = 0.004421 C = 0.004002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.045689 B = 6332.013595 C = 6994.257525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.514 4.514 8 H 0.060 0.940 9 C 0.196 3.804 10 N -0.687 5.687 11 C 0.085 3.915 12 C -0.146 4.146 13 C -0.119 4.119 14 C -0.119 4.119 15 C -0.124 4.124 16 C -0.121 4.121 17 C -0.124 4.124 18 C -0.121 4.121 19 C -0.124 4.124 20 C -0.121 4.121 21 C -0.117 4.117 22 C -0.111 4.111 23 H 0.261 0.739 24 H 0.024 0.976 25 H -0.013 1.013 26 H 0.326 0.674 27 H 0.073 0.927 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.054 0.946 36 H 0.053 0.947 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.054 0.946 40 H 0.053 0.947 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.053 0.947 44 H 0.052 0.948 45 H 0.064 0.936 46 H 0.065 0.935 47 H 0.056 0.944 48 H 0.067 0.933 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.783 -19.072 0.495 19.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.725 3.275 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.553 4.553 8 H 0.078 0.922 9 C 0.070 3.930 10 N -0.317 5.317 11 C -0.026 4.026 12 C -0.185 4.185 13 C -0.157 4.157 14 C -0.157 4.157 15 C -0.161 4.161 16 C -0.158 4.158 17 C -0.161 4.161 18 C -0.158 4.158 19 C -0.161 4.161 20 C -0.158 4.158 21 C -0.155 4.155 22 C -0.149 4.149 23 H 0.070 0.930 24 H 0.042 0.958 25 H 0.005 0.995 26 H 0.143 0.857 27 H 0.091 0.909 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.072 0.928 44 H 0.071 0.929 45 H 0.083 0.917 46 H 0.083 0.917 47 H 0.075 0.925 48 H 0.086 0.914 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.861 -18.920 -0.203 19.013 hybrid contribution -0.021 0.977 0.941 1.357 sum -1.882 -17.943 0.738 18.056 Atomic orbital electron populations 1.69950 1.06040 1.26751 1.51050 1.24972 0.94840 0.99238 0.95446 0.86584 0.79460 0.82873 0.78613 1.20200 1.21386 1.20326 1.21195 0.93440 0.90479 1.50154 0.92182 1.19514 0.90630 0.87336 0.95548 1.60877 1.20744 1.01310 1.48723 1.22058 0.96391 0.90567 0.93536 1.22803 0.95883 1.01033 0.98752 1.21947 0.95975 0.96409 1.01327 1.22009 0.98102 0.97142 0.98438 1.22030 0.98169 0.95906 0.99997 1.22004 1.01498 0.96727 0.95583 1.22034 0.97102 1.01390 0.95610 1.22007 0.96948 0.98342 0.98549 1.22032 0.96642 0.99546 0.97895 1.22024 0.96015 0.96512 1.01288 1.21922 1.01378 0.94223 0.97978 1.22036 0.99932 0.97196 0.95693 0.92962 0.95828 0.99497 0.85657 0.90865 0.92210 0.92369 0.91512 0.92446 0.92878 0.91768 0.91258 0.92741 0.92835 0.91528 0.91228 0.92764 0.92842 0.91505 0.91273 0.92786 0.92876 0.91717 0.91655 0.92519 0.91393 0.92645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.08 13.29 55.43 0.74 -26.34 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.51 -14.73 9.32 -34.44 -0.32 -15.05 16 8 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 9 C 0.20 5.16 5.24 -4.97 -0.03 5.14 16 10 N -0.69 -14.69 6.03 -107.99 -0.65 -15.34 16 11 C 0.09 1.47 2.51 -67.71 -0.17 1.30 16 12 C -0.15 -2.26 5.46 -26.73 -0.15 -2.40 16 13 C -0.12 -1.79 5.97 -26.73 -0.16 -1.95 16 14 C -0.12 -1.45 5.97 -26.74 -0.16 -1.61 16 15 C -0.12 -1.37 5.97 -26.74 -0.16 -1.53 16 16 C -0.12 -1.18 5.97 -26.73 -0.16 -1.34 16 17 C -0.12 -1.20 5.97 -26.73 -0.16 -1.36 16 18 C -0.12 -1.14 5.97 -26.73 -0.16 -1.30 16 19 C -0.12 -1.27 5.97 -26.74 -0.16 -1.43 16 20 C -0.12 -1.32 5.97 -26.73 -0.16 -1.48 16 21 C -0.12 -1.57 5.97 -26.73 -0.16 -1.73 16 22 C -0.11 -1.61 5.76 -26.73 -0.15 -1.77 16 23 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 24 H 0.02 0.68 8.05 -51.93 -0.42 0.26 16 25 H -0.01 -0.35 8.01 -51.93 -0.42 -0.77 16 26 H 0.33 6.77 8.10 -39.29 -0.32 6.45 16 27 H 0.07 1.38 5.40 -51.93 -0.28 1.10 16 28 H 0.06 0.81 5.74 -51.93 -0.30 0.51 16 29 H 0.06 0.99 7.46 -51.93 -0.39 0.60 16 30 H 0.07 1.08 5.74 -51.93 -0.30 0.78 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.74 5.74 -51.93 -0.30 0.44 16 34 H 0.07 0.84 5.74 -51.93 -0.30 0.54 16 35 H 0.05 0.57 8.14 -51.92 -0.42 0.15 16 36 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.65 5.74 -51.93 -0.30 0.36 16 38 H 0.07 0.74 5.74 -51.93 -0.30 0.44 16 39 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.64 5.74 -51.93 -0.30 0.34 16 42 H 0.07 0.78 5.74 -51.93 -0.30 0.48 16 43 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.06 0.69 5.74 -51.93 -0.30 0.39 16 46 H 0.06 0.94 5.74 -51.93 -0.30 0.65 16 47 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 48 H 0.07 1.07 7.87 -51.93 -0.41 0.66 16 49 H 0.05 0.72 5.74 -51.93 -0.30 0.42 16 LS Contribution 355.08 15.07 5.35 5.35 Total: -1.00 -29.06 355.08 -10.79 -39.85 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -8.86 Total: 4.54 kcal Atomic # 6 Polarization: -22.64 SS G_CDS: -2.35 Total: -24.99 kcal Atomic # 7 Polarization: -41.77 SS G_CDS: 0.09 Total: -41.68 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.06 -10.79 -39.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020557587.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.309 kcal (2) G-P(sol) polarization free energy of solvation -29.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds