Wall clock time and date at job start Mon Mar 30 2020 08:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 120.00132 * 2 1 4 4 H 1.48500 * 109.46802 * 239.99699 * 3 2 1 5 5 H 1.48498 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47344 * 119.99497 * 3 2 1 7 7 C 1.37881 * 119.99826 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99752 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00103 * 0.02562 * 7 2 1 10 10 N 1.46905 * 109.47066 * 179.97438 * 9 7 2 11 11 C 1.46901 * 110.99870 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.47021 * 274.99736 * 11 10 9 13 13 C 1.53005 * 109.47186 * 113.26748 * 12 11 10 14 14 C 1.52995 * 109.47234 * 126.77193 * 13 12 11 15 15 C 1.52992 * 109.47247 * 233.28107 * 14 13 12 16 16 C 1.52997 * 109.47541 * 126.70416 * 15 14 13 17 17 C 1.52995 * 109.47483 * 233.25790 * 16 15 14 18 18 C 1.53003 * 109.47383 * 126.74219 * 17 16 15 19 19 C 1.52993 * 109.47399 * 233.27066 * 18 17 16 20 20 C 1.52998 * 109.47264 * 126.71654 * 19 18 17 21 21 C 1.53002 * 109.47334 * 233.27487 * 20 19 18 22 22 C 1.53000 * 109.47187 * 154.99992 * 11 10 9 23 23 H 0.96997 * 120.00392 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47558 * 59.99825 * 9 7 2 25 25 H 1.08998 * 109.47216 * 299.99488 * 9 7 2 26 26 H 1.00901 * 110.99869 * 56.04737 * 10 9 7 27 27 H 1.09000 * 109.47473 * 34.99539 * 11 10 9 28 28 H 1.08994 * 109.47361 * 233.27063 * 12 11 10 29 29 H 1.09000 * 109.47151 * 353.27468 * 12 11 10 30 30 H 1.09002 * 109.46798 * 6.77049 * 13 12 11 31 31 H 1.09001 * 109.47262 * 246.77557 * 13 12 11 32 32 H 1.08999 * 109.47160 * 113.27837 * 14 13 12 33 33 H 1.09005 * 109.47092 * 353.27703 * 14 13 12 34 34 H 1.09004 * 109.47572 * 6.69898 * 15 14 13 35 35 H 1.09011 * 109.47161 * 246.70258 * 15 14 13 36 36 H 1.09003 * 109.47438 * 113.25809 * 16 15 14 37 37 H 1.08996 * 109.47248 * 353.26080 * 16 15 14 38 38 H 1.09006 * 109.46681 * 6.74644 * 17 16 15 39 39 H 1.09001 * 109.47232 * 246.74819 * 17 16 15 40 40 H 1.08999 * 109.46981 * 113.26957 * 18 17 16 41 41 H 1.08998 * 109.47077 * 353.27436 * 18 17 16 42 42 H 1.09000 * 109.47146 * 6.71702 * 19 18 17 43 43 H 1.09002 * 109.47641 * 246.71847 * 19 18 17 44 44 H 1.08995 * 109.47396 * 113.27427 * 20 19 18 45 45 H 1.09003 * 109.47125 * 353.27310 * 20 19 18 46 46 H 1.08999 * 109.47262 * 6.76296 * 21 20 19 47 47 H 1.09000 * 109.47020 * 246.75770 * 21 20 19 48 48 H 1.09003 * 109.46629 * 6.69088 * 22 11 10 49 49 H 1.08994 * 109.47180 * 126.68889 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6962 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6158 0.0005 11 6 1.5053 -4.9071 -0.0001 12 6 1.1512 -5.2959 1.4367 13 6 -0.3688 -5.2762 1.6106 14 6 -0.8344 -6.6174 2.1809 15 6 -1.9335 -7.1971 1.2885 16 6 -1.5588 -8.6227 0.8785 17 6 -1.6243 -8.7493 -0.6448 18 6 -0.2986 -9.3060 -1.1678 19 6 0.2494 -8.3805 -2.2559 20 6 1.6864 -7.9837 -1.9118 21 6 1.8137 -6.4592 -1.9335 22 6 2.4115 -5.9785 -0.6097 23 1 -0.4850 0.8400 -0.0004 24 1 0.6246 -2.5572 -0.8896 25 1 0.6240 -2.5568 0.8903 26 1 2.8405 -3.5487 0.7819 27 1 0.5922 -4.8250 -0.5897 28 1 1.5278 -6.2972 1.6455 29 1 1.6051 -4.5855 2.1277 30 1 -0.8430 -5.1083 0.6436 31 1 -0.6459 -4.4745 2.2951 32 1 -1.2246 -6.4683 3.1877 33 1 0.0074 -7.3090 2.2162 34 1 -2.0415 -6.5792 0.3971 35 1 -2.8759 -7.2125 1.8362 36 1 -2.2568 -9.3266 1.3319 37 1 -0.5472 -8.8445 1.2184 38 1 -1.8045 -7.7678 -1.0834 39 1 -2.4352 -9.4241 -0.9188 40 1 -0.4611 -10.3001 -1.5843 41 1 0.4179 -9.3680 -0.3488 42 1 -0.3698 -7.4856 -2.3174 43 1 0.2353 -8.8987 -3.2148 44 1 2.3680 -8.4157 -2.6445 45 1 1.9379 -8.3552 -0.9183 46 1 0.8281 -6.0142 -2.0699 47 1 2.4642 -6.1606 -2.7556 48 1 3.4011 -5.5581 -0.7893 49 1 2.4936 -6.8196 0.0786 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020557587.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:48:09 Heat of formation + Delta-G solvation = -55.982914 kcal Electronic energy + Delta-G solvation = -21746.066915 eV Core-core repulsion = 18898.601824 eV Total energy + Delta-G solvation = -2847.465092 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.52494 -37.71283 -36.75130 -35.38540 -33.81188 -31.94719 -31.15450 -28.19987 -26.51181 -25.91280 -23.60406 -22.52924 -22.04251 -21.70614 -21.52200 -21.46988 -18.49235 -17.12652 -16.71725 -16.22551 -16.12232 -15.81513 -15.27345 -14.82559 -14.51654 -14.45953 -14.12823 -14.02702 -13.94187 -13.62455 -13.48857 -13.34702 -12.92184 -12.69003 -12.45396 -12.19144 -12.10606 -12.05535 -12.03126 -11.94728 -11.91737 -11.85237 -11.68157 -11.49667 -11.30360 -11.03424 -10.91714 -10.77991 -10.76119 -10.63509 -8.95097 -8.21530 -6.32897 1.39668 1.43455 1.51353 2.39874 3.11265 3.47239 3.65962 3.88046 3.96968 3.98727 4.00792 4.07961 4.11085 4.25386 4.32645 4.55597 4.59299 4.69012 4.69920 4.75718 4.76913 4.83210 4.93198 4.97487 5.06991 5.09139 5.11193 5.13451 5.18890 5.23313 5.27048 5.29905 5.34192 5.34949 5.41929 5.44071 5.48865 5.50505 5.51884 5.54512 5.57742 5.59072 5.62431 5.66950 6.06960 6.53432 6.79969 6.95784 7.38306 8.89545 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.021886 B = 0.004421 C = 0.004002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.045689 B = 6332.013595 C = 6994.257525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.002 3.998 3 Si 0.971 3.029 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.538 4.538 8 H 0.063 0.937 9 C 0.217 3.783 10 N -0.687 5.687 11 C 0.085 3.915 12 C -0.138 4.138 13 C -0.117 4.117 14 C -0.111 4.111 15 C -0.123 4.123 16 C -0.116 4.116 17 C -0.124 4.124 18 C -0.117 4.117 19 C -0.124 4.124 20 C -0.113 4.113 21 C -0.116 4.116 22 C -0.101 4.101 23 H 0.264 0.736 24 H -0.011 1.011 25 H -0.038 1.038 26 H 0.332 0.668 27 H 0.051 0.949 28 H 0.090 0.910 29 H 0.042 0.958 30 H 0.048 0.952 31 H 0.033 0.967 32 H 0.059 0.941 33 H 0.079 0.921 34 H 0.052 0.948 35 H 0.060 0.940 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.053 0.947 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.071 0.929 42 H 0.052 0.948 43 H 0.062 0.938 44 H 0.064 0.936 45 H 0.074 0.926 46 H 0.047 0.953 47 H 0.050 0.950 48 H 0.059 0.941 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.634 -20.733 0.957 20.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.196 4.196 3 Si 0.795 3.205 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.576 4.576 8 H 0.081 0.919 9 C 0.089 3.911 10 N -0.317 5.317 11 C -0.025 4.025 12 C -0.177 4.177 13 C -0.155 4.155 14 C -0.148 4.148 15 C -0.161 4.161 16 C -0.153 4.153 17 C -0.162 4.162 18 C -0.154 4.154 19 C -0.161 4.161 20 C -0.151 4.151 21 C -0.154 4.154 22 C -0.139 4.139 23 H 0.073 0.927 24 H 0.007 0.993 25 H -0.021 1.021 26 H 0.150 0.850 27 H 0.070 0.930 28 H 0.108 0.892 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.052 0.948 32 H 0.078 0.922 33 H 0.097 0.903 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.071 0.929 43 H 0.080 0.920 44 H 0.082 0.918 45 H 0.093 0.907 46 H 0.066 0.934 47 H 0.069 0.931 48 H 0.078 0.922 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.702 -20.608 0.261 20.622 hybrid contribution -0.419 1.490 0.770 1.729 sum -1.121 -19.118 1.031 19.178 Atomic orbital electron populations 1.70090 1.07814 1.27941 1.51586 1.25941 0.95749 1.03316 0.94606 0.85415 0.78148 0.77758 0.79153 1.19376 1.20767 1.19057 1.21576 0.93760 0.91717 1.50549 0.91927 1.19080 0.90526 0.88861 0.92627 1.60792 1.20107 1.01720 1.49068 1.22147 0.96004 0.89488 0.94843 1.22715 0.96014 1.02135 0.96793 1.21902 0.95793 0.97790 0.99984 1.21951 0.98934 0.95302 0.98638 1.22003 0.98161 0.96734 0.99158 1.21971 1.02128 0.95652 0.95568 1.22019 0.97791 1.00784 0.95593 1.21980 0.96619 0.98564 0.98285 1.22009 0.96006 0.99238 0.98862 1.21965 0.96693 0.94163 1.02259 1.21890 1.00081 0.96333 0.97074 1.21971 0.98531 0.96753 0.96658 0.92711 0.99277 1.02068 0.85049 0.93027 0.89160 0.93965 0.93347 0.94786 0.92241 0.90261 0.92956 0.92155 0.91572 0.90954 0.92864 0.91865 0.91577 0.91059 0.92936 0.91956 0.91762 0.90725 0.93429 0.93078 0.92244 0.90022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.78 13.29 21.45 0.28 -57.49 16 2 C 0.00 0.12 5.46 84.66 0.46 0.58 16 3 Si 0.97 45.20 29.54 68.60 2.03 47.23 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 6 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 7 C -0.54 -31.55 9.32 25.60 0.24 -31.32 16 8 H 0.06 3.56 7.81 -2.91 -0.02 3.54 16 9 C 0.22 11.98 5.24 85.55 0.45 12.43 16 10 N -0.69 -30.30 6.03 -495.56 -2.99 -33.29 16 11 C 0.09 3.01 2.51 44.92 0.11 3.13 16 12 C -0.14 -4.27 5.46 30.60 0.17 -4.10 16 13 C -0.12 -3.64 5.97 30.59 0.18 -3.46 16 14 C -0.11 -2.56 5.97 30.59 0.18 -2.38 16 15 C -0.12 -2.63 5.97 30.59 0.18 -2.45 16 16 C -0.12 -2.00 5.97 30.59 0.18 -1.82 16 17 C -0.12 -2.20 5.97 30.59 0.18 -2.02 16 18 C -0.12 -1.91 5.97 30.59 0.18 -1.73 16 19 C -0.12 -2.35 5.97 30.59 0.18 -2.17 16 20 C -0.11 -2.24 5.97 30.59 0.18 -2.06 16 21 C -0.12 -3.05 5.97 30.59 0.18 -2.87 16 22 C -0.10 -2.85 5.76 30.59 0.18 -2.68 16 23 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 24 H -0.01 -0.67 8.05 -2.39 -0.02 -0.69 16 25 H -0.04 -2.27 8.01 -2.39 -0.02 -2.29 16 26 H 0.33 14.00 8.10 -89.69 -0.73 13.28 16 27 H 0.05 2.06 5.40 -2.39 -0.01 2.05 16 28 H 0.09 2.24 5.74 -2.39 -0.01 2.22 16 29 H 0.04 1.45 7.46 -2.39 -0.02 1.43 16 30 H 0.05 1.67 5.74 -2.39 -0.01 1.66 16 31 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.08 1.60 5.74 -2.38 -0.01 1.59 16 34 H 0.05 1.30 5.74 -2.38 -0.01 1.29 16 35 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 36 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.07 1.18 5.74 -2.39 -0.01 1.17 16 38 H 0.05 1.12 5.74 -2.38 -0.01 1.11 16 39 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.07 1.12 5.74 -2.39 -0.01 1.10 16 42 H 0.05 1.18 5.74 -2.39 -0.01 1.17 16 43 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.07 1.34 5.74 -2.39 -0.01 1.33 16 46 H 0.05 1.42 5.74 -2.39 -0.01 1.41 16 47 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 48 H 0.06 1.80 7.87 -2.39 -0.02 1.78 16 49 H 0.08 1.88 5.74 -2.39 -0.01 1.87 16 Total: -1.00 -64.13 355.08 2.76 -61.37 By element: Atomic # 1 Polarization: 24.90 SS G_CDS: 0.19 Total: 25.09 kcal Atomic # 6 Polarization: -46.16 SS G_CDS: 3.25 Total: -42.91 kcal Atomic # 7 Polarization: -88.07 SS G_CDS: -2.70 Total: -90.78 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -64.13 2.76 -61.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020557587.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.390 kcal (2) G-P(sol) polarization free energy of solvation -64.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds