Wall clock time and date at job start Mon Mar 30 2020 08:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47088 * 2 1 4 4 N 1.46502 * 109.47117 * 119.99763 * 2 1 3 5 5 C 1.46501 * 120.00072 * 119.65617 * 4 2 1 6 6 C 1.50700 * 109.47286 * 270.00268 * 5 4 2 7 7 H 1.08006 * 119.99340 * 359.97438 * 6 5 4 8 8 C 1.37873 * 120.00374 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99487 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00003 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47626 * 59.99616 * 10 8 6 12 12 H 1.48510 * 109.47092 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47360 * 299.99218 * 10 8 6 14 14 C 1.37485 * 120.00020 * 299.65368 * 4 2 1 15 15 N 1.30343 * 119.99897 * 177.71206 * 14 4 2 16 16 N 1.37487 * 120.00331 * 357.72065 * 14 4 2 17 17 C 1.46497 * 120.00302 * 184.86462 * 16 14 4 18 18 C 1.52992 * 109.47337 * 275.00378 * 17 16 14 19 19 C 1.53001 * 109.46990 * 180.02562 * 18 17 16 20 20 C 1.53001 * 109.47595 * 59.99556 * 19 18 17 21 21 C 1.53001 * 109.46927 * 300.00330 * 20 19 18 22 22 C 1.53000 * 109.46900 * 154.99880 * 17 16 14 23 23 H 1.09000 * 109.47253 * 291.40462 * 1 2 3 24 24 H 1.08999 * 109.46960 * 51.40040 * 1 2 3 25 25 H 1.09000 * 109.47245 * 171.40279 * 1 2 3 26 26 H 1.08991 * 109.47661 * 239.99921 * 2 1 3 27 27 H 1.09006 * 109.47320 * 188.52968 * 3 2 1 28 28 H 1.08998 * 109.47521 * 308.53319 * 3 2 1 29 29 H 1.09003 * 109.47252 * 68.53500 * 3 2 1 30 30 H 1.09003 * 109.46916 * 30.00104 * 5 4 2 31 31 H 1.08993 * 109.47325 * 150.00027 * 5 4 2 32 32 H 0.97005 * 119.99746 * 180.02562 * 9 8 6 33 33 H 0.96996 * 119.99957 * 0.02562 * 15 14 4 34 34 H 0.97005 * 119.99210 * 4.87287 * 16 14 4 35 35 H 1.09001 * 109.46943 * 35.00440 * 17 16 14 36 36 H 1.09001 * 109.46756 * 299.99572 * 18 17 16 37 37 H 1.09000 * 109.47596 * 59.99576 * 18 17 16 38 38 H 1.09001 * 109.46868 * 299.99315 * 19 18 17 39 39 H 1.09005 * 109.46918 * 179.97438 * 19 18 17 40 40 H 1.08992 * 109.47509 * 180.02562 * 20 19 18 41 41 H 1.09001 * 109.46716 * 60.00154 * 20 19 18 42 42 H 1.09001 * 109.46880 * 299.99840 * 21 20 19 43 43 H 1.09004 * 109.46868 * 179.97438 * 21 20 19 44 44 H 1.08997 * 109.47213 * 300.00400 * 22 17 16 45 45 H 1.09001 * 109.47358 * 60.00326 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.8543 -1.8861 1.0619 6 6 1.9769 -3.1106 1.0207 7 1 0.9038 -3.0085 1.0883 8 6 2.5440 -4.3613 0.8978 9 7 3.8507 -4.4855 0.8160 10 14 1.4564 -5.8790 0.8461 11 1 0.5339 -5.7878 -0.3142 12 1 2.3038 -7.0910 0.7100 13 1 0.6666 -5.9651 2.1007 14 6 1.6920 -0.2167 2.4449 15 7 2.0891 -0.8562 3.5089 16 7 0.9468 0.9318 2.5713 17 6 0.6893 1.4956 3.8987 18 6 -0.5315 0.8103 4.5158 19 6 -0.8007 1.3997 5.9018 20 6 -1.0683 2.9007 5.7747 21 6 0.1526 3.5859 5.1576 22 6 0.4219 2.9967 3.7720 23 1 -0.3634 0.3750 0.9568 24 1 -0.3633 0.6411 -0.8031 25 1 -0.3634 -1.0161 -0.1536 26 1 1.8933 -0.5138 -0.8899 27 1 3.1193 1.4463 -0.1524 28 1 1.5575 1.9985 -0.8039 29 1 1.8065 1.9104 0.9564 30 1 3.4333 -1.8229 0.1405 31 1 3.5319 -1.9531 1.9129 32 1 4.2498 -5.3654 0.7292 33 1 2.6151 -1.6663 3.4198 34 1 0.5914 1.3686 1.7814 35 1 1.5580 1.3338 4.5369 36 1 -1.4002 0.9721 3.8776 37 1 -0.3411 -0.2591 4.6060 38 1 0.0679 1.2382 6.5402 39 1 -1.6708 0.9118 6.3413 40 1 -1.2597 3.3206 6.7622 41 1 -1.9370 3.0621 5.1364 42 1 1.0212 3.4244 5.7960 43 1 -0.0383 4.6552 5.0666 44 1 1.2917 3.4848 3.3324 45 1 -0.4468 3.1585 3.1338 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052046121.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:47:42 Heat of formation + Delta-G solvation = 22.769168 kcal Electronic energy + Delta-G solvation = -21809.366378 eV Core-core repulsion = 18861.775890 eV Total energy + Delta-G solvation = -2947.590489 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.30397 -37.80971 -34.21809 -33.50480 -32.22056 -30.64838 -29.64673 -28.35067 -26.85934 -26.51097 -23.03068 -22.50956 -21.98257 -20.86993 -19.78332 -18.89168 -16.54325 -16.27168 -15.59245 -15.16890 -14.51786 -14.34879 -14.15484 -13.99581 -13.72388 -13.55056 -13.15384 -12.89872 -12.50012 -12.28346 -12.10770 -12.00880 -11.85734 -11.43441 -11.16662 -11.06017 -11.00979 -10.83443 -10.76297 -10.63190 -10.45989 -10.31413 -10.12757 -10.03707 -9.91802 -9.50384 -8.46357 -8.25539 -7.69177 -6.80960 -6.03536 -4.11821 3.31122 3.35478 3.38681 3.63568 4.10409 4.39062 4.52991 4.79276 4.85797 5.00752 5.26771 5.27782 5.30632 5.39622 5.53726 5.55957 5.62462 5.66351 5.69698 5.71082 5.83110 5.85939 6.00603 6.04818 6.06375 6.12363 6.17909 6.25746 6.27372 6.36475 6.50515 6.57945 6.63410 6.67945 6.81595 7.04889 7.30694 7.61973 7.85514 7.95612 8.22002 8.35102 8.84964 8.99756 9.54004 9.90298 11.00703 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.022115 B = 0.005253 C = 0.004712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.821351 B = 5329.468638 C = 5941.085222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.142 3.858 3 C -0.178 4.178 4 N -0.638 5.638 5 C 0.259 3.741 6 C -0.528 4.528 7 H 0.057 0.943 8 C 0.062 3.938 9 N -0.895 5.895 10 Si 0.896 3.104 11 H -0.278 1.278 12 H -0.287 1.287 13 H -0.277 1.277 14 C 0.636 3.364 15 N -0.840 5.840 16 N -0.738 5.738 17 C 0.175 3.825 18 C -0.128 4.128 19 C -0.116 4.116 20 C -0.120 4.120 21 C -0.113 4.113 22 C -0.129 4.129 23 H 0.060 0.940 24 H 0.054 0.946 25 H 0.063 0.937 26 H 0.085 0.915 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.030 0.970 31 H 0.031 0.969 32 H 0.264 0.736 33 H 0.348 0.652 34 H 0.398 0.602 35 H 0.086 0.914 36 H 0.051 0.949 37 H 0.076 0.924 38 H 0.063 0.937 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.058 0.942 42 H 0.064 0.936 43 H 0.060 0.940 44 H 0.063 0.937 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.891 15.772 3.226 17.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.035 3.965 3 C -0.237 4.237 4 N -0.364 5.364 5 C 0.139 3.861 6 C -0.567 4.567 7 H 0.076 0.924 8 C -0.140 4.140 9 N -0.534 5.534 10 Si 0.724 3.276 11 H -0.204 1.204 12 H -0.213 1.213 13 H -0.202 1.202 14 C 0.271 3.729 15 N -0.489 5.489 16 N -0.387 5.387 17 C 0.069 3.931 18 C -0.167 4.167 19 C -0.154 4.154 20 C -0.157 4.157 21 C -0.151 4.151 22 C -0.167 4.167 23 H 0.078 0.922 24 H 0.073 0.927 25 H 0.082 0.918 26 H 0.103 0.897 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.048 0.952 31 H 0.049 0.951 32 H 0.073 0.927 33 H 0.167 0.833 34 H 0.240 0.760 35 H 0.104 0.896 36 H 0.070 0.930 37 H 0.095 0.905 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.079 0.921 44 H 0.082 0.918 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.800 15.760 4.230 18.086 hybrid contribution -0.396 -1.430 -1.305 1.977 sum -8.196 14.330 2.925 16.765 Atomic orbital electron populations 1.22428 0.96664 1.02699 1.01327 1.20764 0.93155 0.92078 0.90528 1.22548 1.01867 0.97290 1.02009 1.47877 1.56011 1.30764 1.01708 1.19086 0.89380 0.80121 0.97516 1.21531 0.93701 0.91004 1.50496 0.92443 1.24948 0.94987 0.98992 0.95089 1.69922 1.09444 1.24054 1.49981 0.86589 0.80332 0.82062 0.78613 1.20373 1.21259 1.20207 1.18664 0.86846 0.85142 0.82264 1.69424 1.33038 1.20402 1.26049 1.44674 1.59174 1.26935 1.07937 1.20580 0.98009 0.90023 0.84481 1.21927 0.97754 1.01716 0.95308 1.21493 1.01378 0.94846 0.97691 1.21564 0.97908 0.96008 1.00258 1.21442 0.98556 0.98980 0.96131 1.21837 1.01463 0.95845 0.97548 0.92172 0.92709 0.91767 0.89697 0.92448 0.92441 0.91561 0.95172 0.95115 0.92678 0.83317 0.76003 0.89564 0.93048 0.90528 0.91799 0.92406 0.92386 0.92276 0.91727 0.92137 0.91779 0.92126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.62 9.03 37.15 0.34 -2.29 16 2 C 0.14 2.42 3.28 -67.93 -0.22 2.19 16 3 C -0.18 -2.46 9.01 37.16 0.33 -2.13 16 4 N -0.64 -13.38 2.47 -169.21 -0.42 -13.80 16 5 C 0.26 6.56 4.86 -5.19 -0.03 6.54 16 6 C -0.53 -14.52 9.39 -34.44 -0.32 -14.84 16 7 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 8 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 9 N -0.90 -25.98 13.29 55.43 0.74 -25.24 16 10 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 13 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 14 C 0.64 13.03 7.69 -320.08 -2.46 10.57 16 15 N -0.84 -19.14 12.79 30.15 0.39 -18.76 16 16 N -0.74 -11.88 3.35 -55.29 -0.19 -12.06 16 17 C 0.18 2.50 2.41 -67.94 -0.16 2.34 16 18 C -0.13 -1.80 5.50 -26.73 -0.15 -1.95 16 19 C -0.12 -1.34 5.92 -26.73 -0.16 -1.50 16 20 C -0.12 -1.15 5.92 -26.73 -0.16 -1.31 16 21 C -0.11 -1.08 5.92 -26.75 -0.16 -1.24 16 22 C -0.13 -1.40 5.39 -26.76 -0.14 -1.55 16 23 H 0.06 0.91 5.20 -51.93 -0.27 0.64 16 24 H 0.05 0.67 8.07 -51.93 -0.42 0.25 16 25 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.08 1.53 7.79 -51.93 -0.40 1.12 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.06 0.64 8.07 -51.93 -0.42 0.22 16 29 H 0.07 0.91 4.97 -51.93 -0.26 0.65 16 30 H 0.03 0.80 7.92 -51.93 -0.41 0.39 16 31 H 0.03 0.85 6.51 -51.93 -0.34 0.51 16 32 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 33 H 0.35 8.77 6.57 -40.82 -0.27 8.50 16 34 H 0.40 5.70 3.59 -40.82 -0.15 5.55 16 35 H 0.09 1.43 7.61 -51.93 -0.40 1.04 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 45 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 342.59 15.07 5.16 5.16 Total: -1.00 -29.08 342.59 -10.67 -39.75 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: -7.94 Total: 11.77 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -3.39 Total: -3.53 kcal Atomic # 7 Polarization: -70.38 SS G_CDS: 0.52 Total: -69.86 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.08 -10.67 -39.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052046121.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.524 kcal (2) G-P(sol) polarization free energy of solvation -29.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds