Wall clock time and date at job start Mon Mar 30 2020 08:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47088 * 2 1 4 4 N 1.46502 * 109.47117 * 119.99763 * 2 1 3 5 5 C 1.46501 * 120.00072 * 119.65617 * 4 2 1 6 6 C 1.50700 * 109.47286 * 270.00268 * 5 4 2 7 7 H 1.08006 * 119.99340 * 359.97438 * 6 5 4 8 8 C 1.37873 * 120.00374 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99487 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00003 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47626 * 59.99616 * 10 8 6 12 12 H 1.48510 * 109.47092 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47360 * 299.99218 * 10 8 6 14 14 C 1.37485 * 120.00020 * 299.65368 * 4 2 1 15 15 N 1.30343 * 119.99897 * 177.71206 * 14 4 2 16 16 N 1.37487 * 120.00331 * 357.72065 * 14 4 2 17 17 C 1.46497 * 120.00302 * 184.86462 * 16 14 4 18 18 C 1.52992 * 109.47337 * 275.00378 * 17 16 14 19 19 C 1.53001 * 109.46990 * 180.02562 * 18 17 16 20 20 C 1.53001 * 109.47595 * 59.99556 * 19 18 17 21 21 C 1.53001 * 109.46927 * 300.00330 * 20 19 18 22 22 C 1.53000 * 109.46900 * 154.99880 * 17 16 14 23 23 H 1.09000 * 109.47253 * 291.40462 * 1 2 3 24 24 H 1.08999 * 109.46960 * 51.40040 * 1 2 3 25 25 H 1.09000 * 109.47245 * 171.40279 * 1 2 3 26 26 H 1.08991 * 109.47661 * 239.99921 * 2 1 3 27 27 H 1.09006 * 109.47320 * 188.52968 * 3 2 1 28 28 H 1.08998 * 109.47521 * 308.53319 * 3 2 1 29 29 H 1.09003 * 109.47252 * 68.53500 * 3 2 1 30 30 H 1.09003 * 109.46916 * 30.00104 * 5 4 2 31 31 H 1.08993 * 109.47325 * 150.00027 * 5 4 2 32 32 H 0.97005 * 119.99746 * 180.02562 * 9 8 6 33 33 H 0.96996 * 119.99957 * 0.02562 * 15 14 4 34 34 H 0.97005 * 119.99210 * 4.87287 * 16 14 4 35 35 H 1.09001 * 109.46943 * 35.00440 * 17 16 14 36 36 H 1.09001 * 109.46756 * 299.99572 * 18 17 16 37 37 H 1.09000 * 109.47596 * 59.99576 * 18 17 16 38 38 H 1.09001 * 109.46868 * 299.99315 * 19 18 17 39 39 H 1.09005 * 109.46918 * 179.97438 * 19 18 17 40 40 H 1.08992 * 109.47509 * 180.02562 * 20 19 18 41 41 H 1.09001 * 109.46716 * 60.00154 * 20 19 18 42 42 H 1.09001 * 109.46880 * 299.99840 * 21 20 19 43 43 H 1.09004 * 109.46868 * 179.97438 * 21 20 19 44 44 H 1.08997 * 109.47213 * 300.00400 * 22 17 16 45 45 H 1.09001 * 109.47358 * 60.00326 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.8543 -1.8861 1.0619 6 6 1.9769 -3.1106 1.0207 7 1 0.9038 -3.0085 1.0883 8 6 2.5440 -4.3613 0.8978 9 7 3.8507 -4.4855 0.8160 10 14 1.4564 -5.8790 0.8461 11 1 0.5339 -5.7878 -0.3142 12 1 2.3038 -7.0910 0.7100 13 1 0.6666 -5.9651 2.1007 14 6 1.6920 -0.2167 2.4449 15 7 2.0891 -0.8562 3.5089 16 7 0.9468 0.9318 2.5713 17 6 0.6893 1.4956 3.8987 18 6 -0.5315 0.8103 4.5158 19 6 -0.8007 1.3997 5.9018 20 6 -1.0683 2.9007 5.7747 21 6 0.1526 3.5859 5.1576 22 6 0.4219 2.9967 3.7720 23 1 -0.3634 0.3750 0.9568 24 1 -0.3633 0.6411 -0.8031 25 1 -0.3634 -1.0161 -0.1536 26 1 1.8933 -0.5138 -0.8899 27 1 3.1193 1.4463 -0.1524 28 1 1.5575 1.9985 -0.8039 29 1 1.8065 1.9104 0.9564 30 1 3.4333 -1.8229 0.1405 31 1 3.5319 -1.9531 1.9129 32 1 4.2498 -5.3654 0.7292 33 1 2.6151 -1.6663 3.4198 34 1 0.5914 1.3686 1.7814 35 1 1.5580 1.3338 4.5369 36 1 -1.4002 0.9721 3.8776 37 1 -0.3411 -0.2591 4.6060 38 1 0.0679 1.2382 6.5402 39 1 -1.6708 0.9118 6.3413 40 1 -1.2597 3.3206 6.7622 41 1 -1.9370 3.0621 5.1364 42 1 1.0212 3.4244 5.7960 43 1 -0.0383 4.6552 5.0666 44 1 1.2917 3.4848 3.3324 45 1 -0.4468 3.1585 3.1338 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052046121.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:47:41 Heat of formation + Delta-G solvation = 8.889782 kcal Electronic energy + Delta-G solvation = -21809.968234 eV Core-core repulsion = 18861.775890 eV Total energy + Delta-G solvation = -2948.192344 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.68547 -39.01696 -35.66964 -35.24502 -33.98897 -31.60672 -31.21501 -29.67764 -28.45080 -28.02366 -24.85467 -23.47727 -23.34035 -22.10778 -21.02613 -20.20855 -18.61016 -17.86178 -17.07003 -16.60114 -16.18493 -15.68040 -15.35395 -15.23070 -14.97044 -14.90084 -14.48790 -14.11248 -14.01273 -13.67943 -13.45510 -13.20451 -13.06459 -12.98688 -12.79638 -12.57425 -12.41775 -12.22921 -11.99574 -11.93665 -11.91025 -11.69773 -11.59389 -11.37428 -11.12481 -10.95468 -10.64036 -9.99246 -9.18960 -8.60537 -8.14220 -6.36013 1.35460 1.38146 1.45708 2.11460 2.36373 2.47591 3.01694 3.08070 3.88261 3.96237 3.99651 4.14025 4.26648 4.34877 4.38268 4.43897 4.58401 4.66038 4.68770 4.70570 4.73453 4.82966 4.92478 4.93452 4.99153 5.02415 5.07324 5.16863 5.22405 5.27725 5.29110 5.30623 5.40996 5.44078 5.44650 5.56732 5.62626 5.65188 5.96541 6.08684 6.41422 6.65198 6.76545 7.27134 7.38191 8.14301 8.83777 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.022115 B = 0.005253 C = 0.004712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.821351 B = 5329.468638 C = 5941.085222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.130 3.870 3 C -0.166 4.166 4 N -0.644 5.644 5 C 0.276 3.724 6 C -0.536 4.536 7 H 0.046 0.954 8 C 0.014 3.986 9 N -0.925 5.925 10 Si 0.960 3.040 11 H -0.268 1.268 12 H -0.279 1.279 13 H -0.279 1.279 14 C 0.636 3.364 15 N -0.865 5.865 16 N -0.721 5.721 17 C 0.172 3.828 18 C -0.123 4.123 19 C -0.113 4.113 20 C -0.115 4.115 21 C -0.111 4.111 22 C -0.120 4.120 23 H 0.061 0.939 24 H 0.096 0.904 25 H 0.036 0.964 26 H 0.071 0.929 27 H 0.046 0.954 28 H 0.096 0.904 29 H 0.069 0.931 30 H 0.014 0.986 31 H 0.002 0.998 32 H 0.266 0.734 33 H 0.328 0.672 34 H 0.410 0.590 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.033 0.967 38 H 0.052 0.948 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.057 0.943 43 H 0.085 0.915 44 H 0.069 0.931 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.022 18.058 2.668 20.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.025 3.975 3 C -0.225 4.225 4 N -0.370 5.370 5 C 0.154 3.846 6 C -0.576 4.576 7 H 0.065 0.935 8 C -0.185 4.185 9 N -0.564 5.564 10 Si 0.785 3.215 11 H -0.193 1.193 12 H -0.204 1.204 13 H -0.205 1.205 14 C 0.270 3.730 15 N -0.514 5.514 16 N -0.371 5.371 17 C 0.067 3.933 18 C -0.162 4.162 19 C -0.152 4.152 20 C -0.152 4.152 21 C -0.149 4.149 22 C -0.158 4.158 23 H 0.080 0.920 24 H 0.114 0.886 25 H 0.056 0.944 26 H 0.090 0.910 27 H 0.065 0.935 28 H 0.114 0.886 29 H 0.087 0.913 30 H 0.032 0.968 31 H 0.020 0.980 32 H 0.075 0.925 33 H 0.144 0.856 34 H 0.254 0.746 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.052 0.948 38 H 0.071 0.929 39 H 0.082 0.918 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.076 0.924 43 H 0.104 0.896 44 H 0.088 0.912 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.971 18.112 3.645 20.994 hybrid contribution 0.279 -2.118 -1.143 2.423 sum -9.692 15.994 2.502 18.868 Atomic orbital electron populations 1.22340 0.94831 1.02035 1.02970 1.21084 0.94615 0.93589 0.88218 1.22430 1.01468 0.94967 1.03629 1.47792 1.55731 1.29995 1.03439 1.18588 0.89195 0.81592 0.95254 1.21682 0.93251 0.92184 1.50434 0.93538 1.25738 0.96251 1.01915 0.94625 1.70029 1.10936 1.24850 1.50618 0.85581 0.78687 0.78579 0.78609 1.19250 1.20367 1.20455 1.18919 0.86563 0.85900 0.81587 1.69467 1.34447 1.20215 1.27287 1.44725 1.57814 1.25164 1.09422 1.20728 0.96950 0.92678 0.82959 1.21840 0.97890 0.99208 0.97274 1.21474 1.01185 0.96815 0.95685 1.21543 0.98259 0.93853 1.01542 1.21464 0.98295 1.00281 0.94897 1.21790 1.02444 0.92481 0.99064 0.92034 0.88563 0.94449 0.91038 0.93476 0.88578 0.91273 0.96816 0.98023 0.92459 0.85590 0.74615 0.92397 0.92102 0.94815 0.92910 0.91790 0.90732 0.91221 0.92408 0.89645 0.91231 0.90389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.66 9.03 71.98 0.65 -4.01 16 2 C 0.13 4.35 3.28 44.99 0.15 4.50 16 3 C -0.17 -4.20 9.01 71.98 0.65 -3.55 16 4 N -0.64 -27.77 2.47 -689.25 -1.70 -29.47 16 5 C 0.28 14.67 4.86 85.63 0.42 15.09 16 6 C -0.54 -30.52 9.39 25.60 0.24 -30.28 16 7 H 0.05 2.70 7.81 -2.91 -0.02 2.67 16 8 C 0.01 0.81 5.46 84.65 0.46 1.27 16 9 N -0.92 -55.07 13.29 21.45 0.28 -54.78 16 10 Si 0.96 45.18 29.54 68.60 2.03 47.21 16 11 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 12 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 13 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 14 C 0.64 26.73 7.69 260.53 2.00 28.73 16 15 N -0.86 -41.62 12.79 -58.53 -0.75 -42.37 16 16 N -0.72 -22.76 3.35 -328.83 -1.10 -23.86 16 17 C 0.17 4.81 2.41 44.99 0.11 4.92 16 18 C -0.12 -3.43 5.50 30.59 0.17 -3.26 16 19 C -0.11 -2.50 5.92 30.59 0.18 -2.32 16 20 C -0.11 -1.84 5.92 30.60 0.18 -1.66 16 21 C -0.11 -1.77 5.92 30.58 0.18 -1.59 16 22 C -0.12 -2.27 5.39 30.58 0.16 -2.10 16 23 H 0.06 1.73 5.20 -2.39 -0.01 1.72 16 24 H 0.10 1.96 8.07 -2.39 -0.02 1.94 16 25 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.07 2.57 7.79 -2.39 -0.02 2.55 16 27 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 28 H 0.10 1.73 8.07 -2.39 -0.02 1.71 16 29 H 0.07 1.71 4.97 -2.39 -0.01 1.70 16 30 H 0.01 0.77 7.92 -2.39 -0.02 0.75 16 31 H 0.00 0.11 6.51 -2.39 -0.02 0.09 16 32 H 0.27 15.01 8.31 -92.70 -0.77 14.24 16 33 H 0.33 17.70 6.57 -92.71 -0.61 17.09 16 34 H 0.41 10.83 3.59 -92.70 -0.33 10.50 16 35 H 0.06 1.97 7.61 -2.39 -0.02 1.95 16 36 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.03 1.22 8.07 -2.39 -0.02 1.20 16 38 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 40 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 44 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -66.48 342.59 4.33 -62.14 By element: Atomic # 1 Polarization: 35.37 SS G_CDS: 0.02 Total: 35.38 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: 5.55 Total: 5.74 kcal Atomic # 7 Polarization: -147.21 SS G_CDS: -3.26 Total: -150.47 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -66.48 4.33 -62.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052046121.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.032 kcal (2) G-P(sol) polarization free energy of solvation -66.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds