Wall clock time and date at job start Mon Mar 30 2020 08:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46875 * 2 1 4 4 C 1.52997 * 109.47374 * 120.00154 * 2 1 3 5 5 N 1.46505 * 109.47057 * 174.99994 * 4 2 1 6 6 C 1.46498 * 119.99826 * 270.00230 * 5 4 2 7 7 C 1.50702 * 109.47034 * 269.99712 * 6 5 4 8 8 H 1.07999 * 119.99972 * 0.02562 * 7 6 5 9 9 C 1.37877 * 120.00353 * 179.97438 * 7 6 5 10 10 N 1.31515 * 119.99696 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00395 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.46950 * 89.99890 * 11 9 7 13 13 H 1.48499 * 109.47234 * 210.00290 * 11 9 7 14 14 H 1.48501 * 109.47067 * 330.00104 * 11 9 7 15 15 C 1.37485 * 119.99829 * 89.99787 * 5 4 2 16 16 N 1.30343 * 119.99343 * 179.97438 * 15 5 4 17 17 N 1.37477 * 120.00073 * 0.02562 * 15 5 4 18 18 C 1.46506 * 119.99967 * 180.02562 * 17 15 5 19 19 C 1.54268 * 110.02813 * 272.63290 * 18 17 15 20 20 C 1.54971 * 104.15564 * 217.13629 * 19 18 17 21 21 C 1.54883 * 102.77798 * 37.88503 * 20 19 18 22 22 C 1.53871 * 110.03427 * 155.41065 * 18 17 15 23 23 H 1.08997 * 109.47095 * 299.99523 * 1 2 3 24 24 H 1.09000 * 109.47501 * 59.99746 * 1 2 3 25 25 H 1.09003 * 109.47095 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46686 * 240.00241 * 2 1 3 27 27 H 1.08997 * 109.47200 * 299.99868 * 3 2 1 28 28 H 1.08997 * 109.46870 * 60.00339 * 3 2 1 29 29 H 1.09000 * 109.46706 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.46743 * 55.00064 * 4 2 1 31 31 H 1.09000 * 109.47015 * 294.99817 * 4 2 1 32 32 H 1.09002 * 109.47684 * 29.99909 * 6 5 4 33 33 H 1.08996 * 109.47244 * 149.99861 * 6 5 4 34 34 H 0.96996 * 120.00019 * 180.02562 * 10 9 7 35 35 H 0.96995 * 120.00502 * 0.02562 * 16 15 5 36 36 H 0.97005 * 120.00163 * 359.72037 * 17 15 5 37 37 H 1.08996 * 110.01294 * 34.01888 * 18 17 15 38 38 H 1.09004 * 110.48773 * 335.77712 * 19 18 17 39 39 H 1.08996 * 110.48996 * 98.42933 * 19 18 17 40 40 H 1.09002 * 110.71525 * 279.57326 * 20 19 18 41 41 H 1.08996 * 110.92520 * 156.29778 * 20 19 18 42 42 H 1.09002 * 110.48973 * 203.40432 * 21 20 19 43 43 H 1.08998 * 110.59905 * 80.81890 * 21 20 19 44 44 H 1.08993 * 110.03486 * 238.56624 * 22 18 17 45 45 H 1.09000 * 110.02921 * 0.02562 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8263 1.1904 6 6 4.1259 -1.9919 0.5610 7 6 4.3422 -3.0659 1.5957 8 1 4.0432 -2.8974 2.6197 9 6 4.9211 -4.2642 1.2350 10 7 5.2848 -4.4697 -0.0121 11 14 5.1886 -5.5958 2.5174 12 1 3.9933 -6.4752 2.5746 13 1 6.3801 -6.4031 2.1516 14 1 5.4051 -4.9676 3.8455 15 6 4.2830 0.1689 1.7260 16 7 5.5821 0.0750 1.6741 17 7 3.6958 1.2624 2.3170 18 6 4.5301 2.3232 2.8872 19 6 4.8886 1.9851 4.3491 20 6 4.8564 3.3547 5.0736 21 6 3.6583 4.0698 4.4014 22 6 3.7485 3.6482 2.9202 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8932 -0.5138 -0.8900 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 3.1299 1.4425 -0.0005 30 1 1.6054 -1.7198 1.2950 31 1 1.7517 -0.1583 2.1369 32 1 3.4757 -2.3721 -0.2270 33 1 5.0851 -1.7020 0.1321 34 1 5.6917 -5.3128 -0.2659 35 1 5.9964 -0.6967 1.2574 36 1 2.7290 1.3337 2.3527 37 1 5.4391 2.4404 2.2974 38 1 4.1478 1.3098 4.7772 39 1 5.8846 1.5460 4.4059 40 1 5.7814 3.9046 4.8999 41 1 4.6800 3.2261 6.1415 42 1 3.7568 5.1511 4.4969 43 1 2.7174 3.7335 4.8371 44 1 4.2787 4.4088 2.3471 45 1 2.7483 3.5019 2.5124 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052046294.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:47:27 Heat of formation + Delta-G solvation = 14.925003 kcal Electronic energy + Delta-G solvation = -21710.639957 eV Core-core repulsion = 18762.709320 eV Total energy + Delta-G solvation = -2947.930637 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.07346 -37.55071 -34.97440 -33.59589 -32.10552 -30.34633 -28.56218 -27.92459 -26.94141 -26.46221 -24.76788 -22.67644 -20.59546 -20.13260 -19.92886 -18.83519 -16.96536 -16.35668 -15.86770 -15.18544 -14.89765 -14.44198 -14.30748 -14.12879 -13.59417 -13.43538 -13.23740 -12.67652 -12.39869 -12.24054 -12.00434 -11.69549 -11.41735 -11.21860 -11.13537 -11.07459 -10.91236 -10.86273 -10.78472 -10.63908 -10.53147 -10.50516 -10.40023 -10.19181 -10.00720 -9.50383 -8.47374 -8.27797 -7.69233 -6.80703 -6.04207 -4.12558 3.28817 3.35779 3.40270 3.64106 4.09138 4.40341 4.60616 4.73599 4.80016 4.97507 5.14736 5.23046 5.26401 5.39346 5.52372 5.64611 5.69386 5.72192 5.76901 5.77992 5.79987 5.86673 5.92635 5.96466 6.00375 6.14250 6.16549 6.28543 6.32477 6.34887 6.49647 6.53768 6.58424 6.62308 6.76843 7.04322 7.30944 7.60972 7.85219 7.95336 8.21425 8.33752 8.83742 8.98863 9.53383 9.89171 11.00022 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.015864 B = 0.006080 C = 0.004819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.549117 B = 4604.419416 C = 5808.571186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.119 4.119 3 C -0.143 4.143 4 C 0.129 3.871 5 N -0.641 5.641 6 C 0.260 3.740 7 C -0.529 4.529 8 H 0.057 0.943 9 C 0.062 3.938 10 N -0.895 5.895 11 Si 0.896 3.104 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.274 1.274 15 C 0.636 3.364 16 N -0.842 5.842 17 N -0.732 5.732 18 C 0.174 3.826 19 C -0.132 4.132 20 C -0.125 4.125 21 C -0.123 4.123 22 C -0.133 4.133 23 H 0.050 0.950 24 H 0.050 0.950 25 H 0.054 0.946 26 H 0.073 0.927 27 H 0.045 0.955 28 H 0.046 0.954 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.052 0.948 32 H 0.031 0.969 33 H 0.031 0.969 34 H 0.263 0.737 35 H 0.347 0.653 36 H 0.393 0.607 37 H 0.091 0.909 38 H 0.064 0.936 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.069 0.931 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.743 14.802 4.360 17.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.139 4.139 3 C -0.200 4.200 4 C 0.002 3.998 5 N -0.366 5.366 6 C 0.140 3.860 7 C -0.568 4.568 8 H 0.076 0.924 9 C -0.140 4.140 10 N -0.534 5.534 11 Si 0.724 3.276 12 H -0.207 1.207 13 H -0.211 1.211 14 H -0.199 1.199 15 C 0.270 3.730 16 N -0.491 5.491 17 N -0.378 5.378 18 C 0.067 3.933 19 C -0.171 4.171 20 C -0.163 4.163 21 C -0.160 4.160 22 C -0.172 4.172 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.091 0.909 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.070 0.930 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.073 0.927 35 H 0.166 0.834 36 H 0.230 0.770 37 H 0.109 0.891 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.088 0.912 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.823 15.238 4.542 17.302 hybrid contribution -0.668 -1.798 0.204 1.929 sum -7.491 13.440 4.745 16.102 Atomic orbital electron populations 1.21771 0.95508 1.01619 1.01144 1.21646 0.94977 0.96779 1.00481 1.21931 1.02244 0.95588 1.00256 1.21243 0.82995 1.00342 0.95204 1.47737 1.03757 1.21909 1.63196 1.19045 0.93516 0.80779 0.92689 1.21565 1.40252 0.99177 0.95806 0.92447 1.24947 0.95308 0.98369 0.95387 1.69930 1.41696 1.25206 1.16522 0.86524 0.77649 0.81576 0.81848 1.20731 1.21138 1.19935 1.18658 0.86871 0.81512 0.85941 1.69420 1.04659 1.35569 1.39479 1.44245 1.07432 1.20567 1.65586 1.21234 0.94060 0.84490 0.93503 1.22809 1.02460 0.96235 0.95620 1.22495 0.98071 0.96686 0.99082 1.22332 0.98699 0.99646 0.95368 1.22473 1.00610 0.97291 0.96791 0.93066 0.93052 0.92642 0.90859 0.93611 0.93540 0.91584 0.90770 0.92996 0.95133 0.95138 0.92727 0.83377 0.76955 0.89079 0.91768 0.91051 0.91623 0.92003 0.92013 0.91902 0.91224 0.91625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.19 37.16 0.34 -1.31 16 2 C -0.12 -1.70 3.13 -90.62 -0.28 -1.99 16 3 C -0.14 -1.90 7.75 37.16 0.29 -1.62 16 4 C 0.13 2.17 4.95 -4.04 -0.02 2.15 16 5 N -0.64 -13.27 2.40 -176.81 -0.42 -13.70 16 6 C 0.26 6.54 4.94 -5.19 -0.03 6.51 16 7 C -0.53 -14.57 9.39 -34.44 -0.32 -14.90 16 8 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 9 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 10 N -0.89 -25.95 13.29 55.43 0.74 -25.22 16 11 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 14 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 15 C 0.64 12.83 6.94 -320.09 -2.22 10.61 16 16 N -0.84 -19.06 12.81 30.15 0.39 -18.68 16 17 N -0.73 -11.56 3.81 -54.20 -0.21 -11.76 16 18 C 0.17 2.45 3.24 -66.81 -0.22 2.24 16 19 C -0.13 -1.83 6.54 -25.03 -0.16 -2.00 16 20 C -0.13 -1.34 6.91 -24.70 -0.17 -1.51 16 21 C -0.12 -1.17 6.83 -25.07 -0.17 -1.34 16 22 C -0.13 -1.43 6.57 -25.61 -0.17 -1.60 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 27 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.54 6.89 -51.93 -0.36 0.18 16 29 H 0.07 1.06 6.03 -51.93 -0.31 0.74 16 30 H 0.07 1.34 8.07 -51.93 -0.42 0.92 16 31 H 0.05 0.78 6.42 -51.93 -0.33 0.45 16 32 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 33 H 0.03 0.84 6.42 -51.93 -0.33 0.50 16 34 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 35 H 0.35 8.70 6.52 -40.82 -0.27 8.43 16 36 H 0.39 5.51 4.29 -40.82 -0.18 5.33 16 37 H 0.09 1.49 7.53 -51.93 -0.39 1.10 16 38 H 0.06 0.96 8.05 -51.93 -0.42 0.54 16 39 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.07 0.67 7.61 -51.93 -0.40 0.27 16 LS Contribution 346.60 15.07 5.22 5.22 Total: -1.00 -29.01 346.60 -10.56 -39.57 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: -8.02 Total: 10.98 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: -3.23 Total: -3.12 kcal Atomic # 7 Polarization: -69.84 SS G_CDS: 0.49 Total: -69.35 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.01 -10.56 -39.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052046294.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.496 kcal (2) G-P(sol) polarization free energy of solvation -29.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds