Wall clock time and date at job start Mon Mar 30 2020 08:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46875 * 2 1 4 4 C 1.52997 * 109.47374 * 120.00154 * 2 1 3 5 5 N 1.46505 * 109.47057 * 174.99994 * 4 2 1 6 6 C 1.46498 * 119.99826 * 270.00230 * 5 4 2 7 7 C 1.50702 * 109.47034 * 269.99712 * 6 5 4 8 8 H 1.07999 * 119.99972 * 0.02562 * 7 6 5 9 9 C 1.37877 * 120.00353 * 179.97438 * 7 6 5 10 10 N 1.31515 * 119.99696 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00395 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.46950 * 89.99890 * 11 9 7 13 13 H 1.48499 * 109.47234 * 210.00290 * 11 9 7 14 14 H 1.48501 * 109.47067 * 330.00104 * 11 9 7 15 15 C 1.37485 * 119.99829 * 89.99787 * 5 4 2 16 16 N 1.30343 * 119.99343 * 179.97438 * 15 5 4 17 17 N 1.37477 * 120.00073 * 0.02562 * 15 5 4 18 18 C 1.46506 * 119.99967 * 180.02562 * 17 15 5 19 19 C 1.54268 * 110.02813 * 272.63290 * 18 17 15 20 20 C 1.54971 * 104.15564 * 217.13629 * 19 18 17 21 21 C 1.54883 * 102.77798 * 37.88503 * 20 19 18 22 22 C 1.53871 * 110.03427 * 155.41065 * 18 17 15 23 23 H 1.08997 * 109.47095 * 299.99523 * 1 2 3 24 24 H 1.09000 * 109.47501 * 59.99746 * 1 2 3 25 25 H 1.09003 * 109.47095 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46686 * 240.00241 * 2 1 3 27 27 H 1.08997 * 109.47200 * 299.99868 * 3 2 1 28 28 H 1.08997 * 109.46870 * 60.00339 * 3 2 1 29 29 H 1.09000 * 109.46706 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.46743 * 55.00064 * 4 2 1 31 31 H 1.09000 * 109.47015 * 294.99817 * 4 2 1 32 32 H 1.09002 * 109.47684 * 29.99909 * 6 5 4 33 33 H 1.08996 * 109.47244 * 149.99861 * 6 5 4 34 34 H 0.96996 * 120.00019 * 180.02562 * 10 9 7 35 35 H 0.96995 * 120.00502 * 0.02562 * 16 15 5 36 36 H 0.97005 * 120.00163 * 359.72037 * 17 15 5 37 37 H 1.08996 * 110.01294 * 34.01888 * 18 17 15 38 38 H 1.09004 * 110.48773 * 335.77712 * 19 18 17 39 39 H 1.08996 * 110.48996 * 98.42933 * 19 18 17 40 40 H 1.09002 * 110.71525 * 279.57326 * 20 19 18 41 41 H 1.08996 * 110.92520 * 156.29778 * 20 19 18 42 42 H 1.09002 * 110.48973 * 203.40432 * 21 20 19 43 43 H 1.08998 * 110.59905 * 80.81890 * 21 20 19 44 44 H 1.08993 * 110.03486 * 238.56624 * 22 18 17 45 45 H 1.09000 * 110.02921 * 0.02562 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8263 1.1904 6 6 4.1259 -1.9919 0.5610 7 6 4.3422 -3.0659 1.5957 8 1 4.0432 -2.8974 2.6197 9 6 4.9211 -4.2642 1.2350 10 7 5.2848 -4.4697 -0.0121 11 14 5.1886 -5.5958 2.5174 12 1 3.9933 -6.4752 2.5746 13 1 6.3801 -6.4031 2.1516 14 1 5.4051 -4.9676 3.8455 15 6 4.2830 0.1689 1.7260 16 7 5.5821 0.0750 1.6741 17 7 3.6958 1.2624 2.3170 18 6 4.5301 2.3232 2.8872 19 6 4.8886 1.9851 4.3491 20 6 4.8564 3.3547 5.0736 21 6 3.6583 4.0698 4.4014 22 6 3.7485 3.6482 2.9202 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8932 -0.5138 -0.8900 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 3.1299 1.4425 -0.0005 30 1 1.6054 -1.7198 1.2950 31 1 1.7517 -0.1583 2.1369 32 1 3.4757 -2.3721 -0.2270 33 1 5.0851 -1.7020 0.1321 34 1 5.6917 -5.3128 -0.2659 35 1 5.9964 -0.6967 1.2574 36 1 2.7290 1.3337 2.3527 37 1 5.4391 2.4404 2.2974 38 1 4.1478 1.3098 4.7772 39 1 5.8846 1.5460 4.4059 40 1 5.7814 3.9046 4.8999 41 1 4.6800 3.2261 6.1415 42 1 3.7568 5.1511 4.4969 43 1 2.7174 3.7335 4.8371 44 1 4.2787 4.4088 2.3471 45 1 2.7483 3.5019 2.5124 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052046294.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:47:27 Heat of formation + Delta-G solvation = 0.825071 kcal Electronic energy + Delta-G solvation = -21711.251376 eV Core-core repulsion = 18762.709320 eV Total energy + Delta-G solvation = -2948.542056 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.47631 -38.75287 -36.28441 -35.38733 -33.86979 -31.90696 -29.65435 -29.49631 -28.13732 -27.67045 -26.33122 -24.57512 -21.57369 -21.35371 -21.07982 -20.33017 -18.65458 -18.33276 -17.21090 -16.65724 -16.19275 -15.96060 -15.63958 -15.51308 -14.94192 -14.75569 -14.39607 -14.15615 -13.81235 -13.71555 -13.22694 -13.02769 -12.85697 -12.78215 -12.55840 -12.49445 -12.26899 -12.19553 -11.92912 -11.88161 -11.83644 -11.72190 -11.62060 -11.53647 -11.40654 -11.28767 -10.64762 -10.01895 -9.17725 -8.60175 -8.14650 -6.37121 1.35120 1.37315 1.47624 2.11060 2.36361 2.48180 3.05716 3.11702 3.77301 3.87535 3.94000 4.06321 4.12256 4.24119 4.49503 4.57328 4.65369 4.70361 4.73741 4.76627 4.79304 4.89307 4.90853 4.92483 4.99025 5.03823 5.10075 5.13375 5.15442 5.20626 5.27872 5.29556 5.43705 5.45401 5.46589 5.54027 5.54617 5.64167 5.96158 6.08213 6.39586 6.66751 6.75700 7.26357 7.37256 8.14374 8.83238 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.015864 B = 0.006080 C = 0.004819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.549117 B = 4604.419416 C = 5808.571186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.113 4.113 3 C -0.135 4.135 4 C 0.125 3.875 5 N -0.646 5.646 6 C 0.279 3.721 7 C -0.540 4.540 8 H 0.046 0.954 9 C 0.014 3.986 10 N -0.924 5.924 11 Si 0.962 3.038 12 H -0.268 1.268 13 H -0.280 1.280 14 H -0.277 1.277 15 C 0.637 3.363 16 N -0.868 5.868 17 N -0.714 5.714 18 C 0.168 3.832 19 C -0.133 4.133 20 C -0.119 4.119 21 C -0.115 4.115 22 C -0.124 4.124 23 H 0.072 0.928 24 H 0.065 0.935 25 H 0.050 0.950 26 H 0.044 0.956 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.034 0.966 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.013 0.987 33 H 0.002 0.998 34 H 0.267 0.733 35 H 0.328 0.672 36 H 0.404 0.596 37 H 0.064 0.936 38 H 0.053 0.947 39 H 0.041 0.959 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.083 0.917 43 H 0.071 0.929 44 H 0.079 0.921 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.861 16.559 5.825 20.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.133 4.133 3 C -0.192 4.192 4 C 0.000 4.000 5 N -0.371 5.371 6 C 0.157 3.843 7 C -0.579 4.579 8 H 0.065 0.935 9 C -0.185 4.185 10 N -0.564 5.564 11 Si 0.787 3.213 12 H -0.194 1.194 13 H -0.205 1.205 14 H -0.202 1.202 15 C 0.272 3.728 16 N -0.517 5.517 17 N -0.361 5.361 18 C 0.062 3.938 19 C -0.172 4.172 20 C -0.157 4.157 21 C -0.152 4.152 22 C -0.163 4.163 23 H 0.091 0.909 24 H 0.084 0.916 25 H 0.070 0.930 26 H 0.062 0.938 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.053 0.947 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.031 0.969 33 H 0.019 0.981 34 H 0.076 0.924 35 H 0.144 0.856 36 H 0.244 0.756 37 H 0.082 0.918 38 H 0.072 0.928 39 H 0.060 0.940 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.102 0.898 43 H 0.090 0.910 44 H 0.098 0.902 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -9.003 17.043 6.026 20.195 hybrid contribution -0.007 -2.325 -0.273 2.341 sum -9.010 14.718 5.753 18.190 Atomic orbital electron populations 1.21715 0.92642 1.02013 1.02930 1.21549 0.97222 0.96847 0.97664 1.21849 1.00137 0.95007 1.02247 1.21479 0.80367 1.00476 0.97695 1.47595 1.05535 1.20926 1.62994 1.18514 0.92012 0.81853 0.91929 1.21727 1.40442 1.00138 0.95556 0.93549 1.25747 0.94886 1.00561 0.97321 1.70034 1.42208 1.25938 1.18223 0.85500 0.78038 0.78811 0.78940 1.19352 1.20540 1.20162 1.18890 0.86416 0.82220 0.85308 1.69456 1.06161 1.34920 1.41195 1.44262 1.08100 1.19329 1.64369 1.21392 0.93688 0.85777 0.92907 1.22744 1.00359 0.98080 0.96016 1.22467 0.99221 0.94494 0.99470 1.22322 0.98274 1.00815 0.93835 1.22422 1.00665 0.94902 0.98267 0.90928 0.91576 0.93037 0.93780 0.92011 0.91127 0.94711 0.92249 0.90461 0.96923 0.98052 0.92439 0.85621 0.75602 0.91801 0.92819 0.93962 0.91128 0.90866 0.89789 0.91002 0.90202 0.90302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.19 71.98 0.66 -2.12 16 2 C -0.11 -3.13 3.13 -10.79 -0.03 -3.17 16 3 C -0.14 -3.34 7.75 71.98 0.56 -2.78 16 4 C 0.12 4.16 4.95 86.38 0.43 4.59 16 5 N -0.65 -27.61 2.40 -713.29 -1.71 -29.32 16 6 C 0.28 14.79 4.94 85.63 0.42 15.22 16 7 C -0.54 -30.73 9.39 25.60 0.24 -30.49 16 8 H 0.05 2.69 7.81 -2.91 -0.02 2.67 16 9 C 0.01 0.82 5.46 84.65 0.46 1.28 16 10 N -0.92 -55.02 13.29 21.45 0.28 -54.73 16 11 Si 0.96 45.11 29.54 68.60 2.03 47.13 16 12 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 13 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 14 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 15 C 0.64 26.43 6.94 260.54 1.81 28.24 16 16 N -0.87 -41.42 12.81 -58.53 -0.75 -42.17 16 17 N -0.71 -22.10 3.81 -325.38 -1.24 -23.34 16 18 C 0.17 4.64 3.24 45.71 0.15 4.79 16 19 C -0.13 -3.64 6.54 31.70 0.21 -3.44 16 20 C -0.12 -2.27 6.91 31.91 0.22 -2.05 16 21 C -0.11 -1.76 6.83 31.67 0.22 -1.54 16 22 C -0.12 -2.29 6.57 31.32 0.21 -2.09 16 23 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.07 1.38 6.89 -2.39 -0.02 1.37 16 29 H 0.03 1.08 6.03 -2.39 -0.01 1.07 16 30 H 0.06 2.15 8.07 -2.39 -0.02 2.13 16 31 H 0.08 2.17 6.42 -2.39 -0.02 2.15 16 32 H 0.01 0.71 8.07 -2.39 -0.02 0.69 16 33 H 0.00 0.09 6.42 -2.39 -0.02 0.08 16 34 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 35 H 0.33 17.56 6.52 -92.71 -0.60 16.95 16 36 H 0.40 10.45 4.29 -92.70 -0.40 10.05 16 37 H 0.06 2.14 7.53 -2.39 -0.02 2.12 16 38 H 0.05 1.57 8.05 -2.39 -0.02 1.55 16 39 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.08 1.28 7.61 -2.39 -0.02 1.26 16 Total: -1.00 -66.05 346.60 4.11 -61.94 By element: Atomic # 1 Polarization: 34.08 SS G_CDS: -0.04 Total: 34.04 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: 5.55 Total: 6.45 kcal Atomic # 7 Polarization: -146.14 SS G_CDS: -3.42 Total: -149.56 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.13 kcal Total: -66.05 4.11 -61.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052046294.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.765 kcal (2) G-P(sol) polarization free energy of solvation -66.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds