Wall clock time and date at job start Mon Mar 30 2020 08:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 113.99960 * 2 1 4 4 H 1.09005 * 109.47317 * 30.00222 * 3 2 1 5 5 C 1.53002 * 109.47149 * 270.00087 * 3 2 1 6 6 C 1.53001 * 109.47039 * 180.02562 * 5 3 2 7 7 C 1.53001 * 109.47371 * 59.99973 * 6 5 3 8 8 C 1.53002 * 109.47061 * 300.00014 * 7 6 5 9 9 H 1.08998 * 109.46874 * 299.99899 * 8 7 6 10 10 N 1.46496 * 109.47161 * 180.02562 * 8 7 6 11 11 C 1.36941 * 119.99670 * 293.72104 * 10 8 7 12 12 H 1.07998 * 120.00118 * 237.63119 * 11 10 8 13 13 C 1.38815 * 119.99862 * 57.64111 * 11 10 8 14 14 N 1.31611 * 120.00040 * 37.19197 * 13 11 10 15 15 Si 1.86805 * 119.99874 * 217.19719 * 13 11 10 16 16 H 1.48496 * 109.47253 * 179.97438 * 15 13 11 17 17 H 1.48503 * 109.46996 * 299.99769 * 15 13 11 18 18 H 1.48510 * 109.47032 * 59.99546 * 15 13 11 19 19 C 1.46499 * 120.00248 * 113.72602 * 10 8 7 20 20 C 1.54268 * 110.02990 * 237.90433 * 19 10 8 21 21 C 1.54967 * 104.16009 * 217.13385 * 20 19 10 22 22 C 1.54889 * 102.77346 * 37.89164 * 21 20 19 23 23 C 1.53874 * 110.03406 * 120.68970 * 19 10 8 24 24 C 1.53001 * 109.47268 * 150.00055 * 3 2 1 25 25 H 1.09000 * 109.47222 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47149 * 299.99576 * 1 2 3 27 27 H 1.09002 * 109.47404 * 60.00225 * 1 2 3 28 28 H 1.08999 * 109.47155 * 60.00241 * 5 3 2 29 29 H 1.08998 * 109.46874 * 299.99942 * 5 3 2 30 30 H 1.09005 * 109.47324 * 300.00072 * 6 5 3 31 31 H 1.09004 * 109.47097 * 180.02562 * 6 5 3 32 32 H 1.08995 * 109.47174 * 180.02562 * 7 6 5 33 33 H 1.08998 * 109.47194 * 59.99717 * 7 6 5 34 34 H 0.97007 * 119.99800 * 180.02562 * 14 13 11 35 35 H 1.08990 * 110.01433 * 359.29853 * 19 10 8 36 36 H 1.09001 * 110.49087 * 335.78547 * 20 19 10 37 37 H 1.09003 * 110.48592 * 98.42889 * 20 19 10 38 38 H 1.08998 * 110.72070 * 279.57931 * 21 20 19 39 39 H 1.08999 * 110.92099 * 156.29547 * 21 20 19 40 40 H 1.09000 * 110.48592 * 203.40325 * 22 21 20 41 41 H 1.09001 * 110.48916 * 80.76020 * 22 21 20 42 42 H 1.08993 * 110.03406 * 238.56967 * 23 19 10 43 43 H 1.09007 * 110.03128 * 359.97438 * 23 19 10 44 44 H 1.08998 * 109.47194 * 59.99789 * 24 3 2 45 45 H 1.09004 * 109.47214 * 300.00250 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9994 0.5139 5 6 2.2176 1.7714 -1.4425 6 6 2.8405 3.1688 -1.4425 7 6 4.1893 3.1261 -0.7214 8 6 3.9818 2.6602 0.7211 9 1 3.3169 3.3543 1.2350 10 7 5.2732 2.6198 1.4117 11 6 6.2294 1.7197 1.0234 12 1 6.6245 1.0106 1.7357 13 6 6.6910 1.7189 -0.2858 14 7 6.8450 2.8562 -0.9299 15 14 7.0933 0.1034 -1.1332 16 1 7.5628 0.3733 -2.5159 17 1 8.1596 -0.6004 -0.3764 18 1 5.8766 -0.7469 -1.1811 19 6 5.5416 3.5422 2.5177 20 6 6.7911 4.3916 2.2060 21 6 7.5022 4.5365 3.5753 22 6 7.2850 3.1464 4.2228 23 6 5.8552 2.7511 3.7997 24 6 3.3589 1.2633 0.7212 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.2568 1.8015 -1.9563 29 1 2.8829 1.0775 -1.9563 30 1 2.1756 3.8630 -0.9285 31 1 2.9879 3.5010 -2.4702 32 1 4.6328 4.1217 -0.7210 33 1 4.8542 2.4319 -1.2354 34 1 7.1672 2.8555 -1.8449 35 1 4.6805 4.1904 2.6802 36 1 7.4356 3.8754 1.4944 37 1 6.5015 5.3691 1.8203 38 1 7.0331 5.3184 4.1725 39 1 8.5649 4.7390 3.4424 40 1 7.3561 3.2158 5.3083 41 1 8.0091 2.4286 3.8373 42 1 5.1468 3.0159 4.5846 43 1 5.8072 1.6807 3.5990 44 1 4.0241 0.5694 0.2074 45 1 3.2111 0.9313 1.7489 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080215104.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:30:43 Heat of formation + Delta-G solvation = -42.638211 kcal Electronic energy + Delta-G solvation = -22515.658419 eV Core-core repulsion = 19532.938902 eV Total energy + Delta-G solvation = -2982.719517 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -38.81584 -37.47382 -35.89342 -33.33449 -31.34510 -29.41192 -28.45368 -27.63636 -26.26873 -26.04481 -23.60477 -21.50796 -20.88912 -19.71354 -19.21305 -18.66873 -16.60098 -15.60089 -15.28902 -14.96503 -14.74110 -14.55170 -14.27735 -13.68067 -13.34702 -13.21464 -12.68193 -12.42933 -12.19498 -12.02869 -11.81257 -11.34259 -11.31181 -10.96798 -10.82600 -10.58506 -10.51293 -10.28579 -10.23740 -10.18720 -10.07613 -10.03953 -9.78560 -9.68481 -9.54995 -9.41290 -9.30514 -8.92466 -7.82040 -6.39070 -5.66878 -3.46572 3.37809 3.44931 3.53187 4.13091 4.50518 5.14761 5.23126 5.33778 5.44197 5.53813 5.55480 5.61047 5.63793 5.72713 5.76782 5.84758 5.94457 6.12286 6.22008 6.27036 6.29215 6.38576 6.42210 6.47230 6.51486 6.63914 6.65093 6.70481 6.72131 6.73760 6.80717 6.90556 7.07392 7.13219 7.18629 7.24844 7.39451 7.53925 7.66069 7.78339 7.86819 7.95645 8.75951 9.29533 9.81252 10.59952 11.05941 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.016378 B = 0.007877 C = 0.006599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.179769 B = 3553.625979 C = 4241.948645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.387 6.387 3 C 0.092 3.908 4 H 0.050 0.950 5 C -0.134 4.134 6 C -0.120 4.120 7 C -0.125 4.125 8 C 0.196 3.804 9 H 0.034 0.966 10 N -0.573 5.573 11 C -0.284 4.284 12 H 0.049 0.951 13 C 0.059 3.941 14 N -0.838 5.838 15 Si 0.854 3.146 16 H -0.292 1.292 17 H -0.279 1.279 18 H -0.275 1.275 19 C 0.172 3.828 20 C -0.124 4.124 21 C -0.125 4.125 22 C -0.114 4.114 23 C -0.131 4.131 24 C -0.113 4.113 25 H 0.078 0.922 26 H 0.036 0.964 27 H 0.035 0.965 28 H 0.047 0.953 29 H 0.066 0.934 30 H 0.045 0.955 31 H 0.051 0.949 32 H 0.060 0.940 33 H 0.091 0.909 34 H 0.254 0.746 35 H 0.038 0.962 36 H 0.101 0.899 37 H 0.038 0.962 38 H 0.047 0.953 39 H 0.050 0.950 40 H 0.043 0.957 41 H 0.061 0.939 42 H 0.038 0.962 43 H 0.069 0.931 44 H 0.077 0.923 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.684 1.004 2.821 8.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.306 6.306 3 C 0.034 3.966 4 H 0.068 0.932 5 C -0.172 4.172 6 C -0.158 4.158 7 C -0.165 4.165 8 C 0.089 3.911 9 H 0.053 0.947 10 N -0.293 5.293 11 C -0.413 4.413 12 H 0.066 0.934 13 C -0.147 4.147 14 N -0.474 5.474 15 Si 0.681 3.319 16 H -0.218 1.218 17 H -0.205 1.205 18 H -0.201 1.201 19 C 0.066 3.934 20 C -0.163 4.163 21 C -0.163 4.163 22 C -0.152 4.152 23 C -0.171 4.171 24 C -0.152 4.152 25 H 0.096 0.904 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.065 0.935 29 H 0.085 0.915 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.110 0.890 34 H 0.064 0.936 35 H 0.056 0.944 36 H 0.119 0.881 37 H 0.057 0.943 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.061 0.939 41 H 0.080 0.920 42 H 0.057 0.943 43 H 0.088 0.912 44 H 0.096 0.904 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.501 0.933 2.660 8.013 hybrid contribution -0.067 -0.594 -0.723 0.938 sum -7.568 0.339 1.937 7.819 Atomic orbital electron populations 1.22688 0.82503 1.01866 0.99378 1.87951 1.18449 1.29174 1.95044 1.22298 0.95778 0.82999 0.95550 0.93232 1.21983 0.99943 0.98255 0.97040 1.21626 0.99090 0.94876 1.00251 1.22336 0.93672 1.03307 0.97158 1.20237 0.86656 0.91969 0.92268 0.94740 1.43813 1.10506 1.38719 1.36286 1.18285 1.18924 1.09981 0.94105 0.93379 1.25328 0.94582 0.94946 0.99838 1.70429 1.40608 1.24635 1.11701 0.87205 0.78843 0.87045 0.78794 1.21817 1.20452 1.20099 1.21080 0.94459 0.89778 0.88101 1.22779 0.99002 0.98752 0.95809 1.22465 0.99314 0.96365 0.98200 1.22210 0.98117 0.97165 0.97726 1.22560 0.94876 1.01946 0.97714 1.21939 0.92898 1.01143 0.99238 0.90373 0.94542 0.94651 0.93470 0.91523 0.93576 0.93028 0.92154 0.89036 0.93563 0.94370 0.88099 0.94320 0.93375 0.93146 0.93854 0.91986 0.94302 0.91213 0.90432 0.92715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.82 101.05 1.09 1.52 16 2 O -0.39 -6.86 10.35 -35.23 -0.36 -7.23 16 3 C 0.09 1.63 2.61 -26.73 -0.07 1.56 16 4 H 0.05 0.81 7.79 -51.93 -0.40 0.41 16 5 C -0.13 -2.33 5.54 -26.73 -0.15 -2.48 16 6 C -0.12 -2.14 5.92 -26.73 -0.16 -2.29 16 7 C -0.13 -2.70 3.93 -26.73 -0.11 -2.80 16 8 C 0.20 4.16 2.63 -67.96 -0.18 3.98 16 9 H 0.03 0.70 7.58 -51.93 -0.39 0.31 16 10 N -0.57 -13.18 2.29 -156.92 -0.36 -13.53 16 11 C -0.28 -7.18 6.08 -15.06 -0.09 -7.27 16 12 H 0.05 1.29 7.40 -52.49 -0.39 0.91 16 13 C 0.06 1.51 3.48 -17.43 -0.06 1.44 16 14 N -0.84 -21.86 10.88 55.49 0.60 -21.26 16 15 Si 0.85 20.43 29.68 -169.99 -5.05 15.39 16 16 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 C 0.17 3.61 3.44 -66.81 -0.23 3.38 16 20 C -0.12 -2.61 6.42 -25.03 -0.16 -2.77 16 21 C -0.13 -2.21 6.91 -24.70 -0.17 -2.38 16 22 C -0.11 -2.02 6.83 -25.07 -0.17 -2.19 16 23 C -0.13 -2.51 6.27 -25.62 -0.16 -2.67 16 24 C -0.11 -2.33 4.72 -26.76 -0.13 -2.45 16 25 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 26 H 0.04 0.43 8.09 -51.93 -0.42 0.01 16 27 H 0.03 0.42 7.87 -51.93 -0.41 0.01 16 28 H 0.05 0.72 7.87 -51.93 -0.41 0.31 16 29 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.06 1.42 7.96 -51.93 -0.41 1.00 16 33 H 0.09 2.23 4.89 -51.93 -0.25 1.97 16 34 H 0.25 6.54 8.31 -40.82 -0.34 6.20 16 35 H 0.04 0.77 7.60 -51.93 -0.39 0.38 16 36 H 0.10 2.50 6.80 -51.93 -0.35 2.14 16 37 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.07 1.46 6.94 -51.92 -0.36 1.10 16 44 H 0.08 1.83 7.53 -51.93 -0.39 1.43 16 45 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 336.31 15.07 5.07 5.07 Total: -1.00 -25.73 336.31 -9.21 -34.94 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -8.38 Total: 2.05 kcal Atomic # 6 Polarization: -14.69 SS G_CDS: -0.74 Total: -15.43 kcal Atomic # 7 Polarization: -35.04 SS G_CDS: 0.24 Total: -34.79 kcal Atomic # 8 Polarization: -6.86 SS G_CDS: -0.36 Total: -7.23 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.05 Total: 15.39 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -25.73 -9.21 -34.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080215104.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.700 kcal (2) G-P(sol) polarization free energy of solvation -25.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds